{ "terms": { "21001": [ "MRE-Seq", "methylation-sensitive restriction enzyme" ], "21002": [ "RRBS", "reduced representation bisulfite sequencing" ], "21003": [ "MeDIP-Seq", "methylated DNA immunoprecipitation" ], "21004": [ "methylC-Seq", "whole-genome bisulfite sequencing" ], "21005": [ "DNA methylome", "whole-genome DNA methylome" ], "21006": [ "methylCRF", "methylation prediction by methylCRF algorithm (PMID:23804401)" ], "21007": [ "MeDIP-chip", "methylated DNA immunoprecipitation microarray" ], "21008": [ "hMeDIP-Seq", "hydroxymethylated DNA immunoprecipitation" ], "21009": [ "TAB-Seq", "Tet-assisted bisulfite sequencing" ], "21010": [ "oxBS-Seq", "oxidative bisulfite sequencing" ], "21011": [ "hMe-Seal", "Hydroxymethyl selective chemical labelling" ], "21012": [ "450K array", "Human Methylation 450K array" ], "21013": [ "27K array", "Human Methylation 27K array" ], "22000": [ "ChIP-Seq control", "ChIP-Seq control" ], "22001": [ "ChIP-Seq input", "ChIP-Seq input" ], "22002": [ "H2AK5ac", "acetylation of lysine 5 of histone H2A" ], "22003": [ "H2BK5ac", "acetylation of lysine 5 of histone H2B" ], "22004": [ "H2BK120ac", "acetylation of lysine 120 of histone H2B" ], "22005": [ "H2BK20ac", "acetylation of lysine 20 of histone H2B" ], "22006": [ "H2BK15ac", "acetylation of lysine 15 of histone H2B" ], "22007": [ "H2BK12ac", "acetylation of lysine 12 of histone H2B" ], "22008": [ "H3K4me2", "dimethylation of lysine 4 of histone H3" ], "22009": [ "H3K4me3", "trimethylation of lysine 4 of histone H3" ], "22010": [ "H3K4me1", "monomethylation of lysine 4 of histone H3" ], "22011": [ "H3K4ac", "acetylation of lysine 4 of histone H3" ], "22012": [ "H3K9me3", "trimethylation of lysine 9 of histone H3" ], "22013": [ "H3K9ac", "acetylation of lysine 9 of histone H3" ], "22014": [ "H3K14ac", "acetylation of lysine 14 of histone H3" ], "22015": [ "H3K18ac", "acetylation of lysine 18 of histone H3" ], "22016": [ "H3K23me2", "dimethylation of lysine 23 of histone H3" ], "22017": [ "H3K23ac", "acetylation of lysine 23 of histone 3" ], "22018": [ "H3K27me3", "trimethylation of lysine 27 of histone H3" ], "22019": [ "H3K27ac", "acetylation of lysine 27 of histone 3" ], "22020": [ "H3K36me3", "trimethylation of lysine 36 of histone H3" ], "22021": [ "H3K56ac", "acetylation of lysine 56 of histone 3" ], "22022": [ "H3K79me2", "dimethylation of lysine 79 of histone H3" ], "22023": [ "H3K79me1", "monomethylation of lysine 79 of histone H3" ], "22024": [ "H4K8ac", "acetylation of lysine 8 of histone 4" ], "22025": [ "H4K20me1", "monomethylation of lysine 20 of histone H4" ], "22026": [ "H4K91ac", "acetylation of lysine 91 of histone 4" ], "22027": [ "H4K5ac", "acetylation of lysine 5 of histone 4" ], "22028": [ "H2A.Z", "histone variant H2A.Z" ], "22029": [ "H3K9me1", "monomethylation of lysine 9 of histone H3" ], "22030": [ "H3K27me3B", "Histone H3 (tri-methyl K27) marks repressed chromatin regions" ], "22031": [ "H3K4me3B", "Histone H3 (tri-methyl K4) marks promoters in chromatin regions" ], "22032": [ "H3K9acB", "Histone H3 (acetyl K9) marks promoters in chromatin regions" ], "22033": [ "H3K36me3B", "Histone H3 (tri-methyl K36) marks actively transcribed chromatin regions" ], "22034": [ "ESET", "ESET" ], "22035": [ "HDAC1", "Histone deacetylase 1" ], "22036": [ "HDAC6", "Histone deacetylase 6" ], "22037": [ "JARID1C", "JARID1C" ], "22038": [ "PCAF", "PCAF" ], "22039": [ "PLU1", "PLU1" ], "22040": [ "RBBP5", "RBBP5" ], "22041": [ "RNAPIIS5P", "RNAPIIS5P" ], "22042": [ "WCE", "WCE" ], "22043": [ "CHD1", "CHD1" ], "22044": [ "HDAC2", "Histone deacetylase 2" ], "22046": [ "SUZ12", "SUZ12" ], "22047": [ "KAT3A-CBP", "KAT3A-CBP" ], "22048": [ "NCOR", "NCOR" ], "22049": [ "RNF2", "RNF2" ], "22050": [ "SIRT6", "SIRT6" ], "22051": [ "CHD7", "CHD7" ], "22052": [ "JARID1B", "histone demethylase JARID1B" ], "22053": [ "SAP30", "SAP30" ], "22054": [ "CBX8", "CBX8" ], "22055": [ "MI2", "MI2" ], "22056": [ "PHF8", "PHF8" ], "22057": [ "JARID1A", "JARID1A" ], "22058": [ "JMJD2A", "JMJD2A" ], "22059": [ "CBX2", "CBX2" ], "22060": [ "EZH2", "EZH2" ], "22061": [ "HP1g", "HP1g" ], "22062": [ "LSD1", "LSD1" ], "22063": [ "NSD2", "NSD2" ], "22064": [ "REST", "REST" ], "22065": [ "H3T11ph", "Phosphorylation of histone H3 at threonine 11" ], "22066": [ "H2AK9ac", "acetylation of lysine 9 of H2A" ], "22067": [ "H4K12ac", "acetylation of lysine 12 of H4" ], "22068": [ "H3K79me3", "trimethylation of lysine 79 of histone H3" ], "22069": [ "H2Av", "histone variant H2Av" ], "22070": [ "H3", "histone H3" ], "22071": [ "H3.3", "histone variant H3.3" ], "22072": [ "H3K9acS10ph", "acetylation of lysine 9 and phosphorylation of serine 10 of histone 3" ], "22073": [ "H3K9me2", "dimethylation of lysine 9 of histone H3" ], "22074": [ "H3K27acS28ph", "acetylation of lysine 27 and phosphorylation of serine 28 of histone 3" ], "22075": [ "H4K16ac", "acetylation of lysine 16 of histone 4" ], "22076": [ "BEAF-32", "BEAF-32" ], "22077": [ "Cap-H2", "Cap-H2" ], "22078": [ "Chro", "Chro" ], "22079": [ "Cp190", "Cp190" ], "22080": [ "JIL-1", "JIL-1" ], "22081": [ "l(3)mbt", "l(3)mbt" ], "22082": [ "mod(mdg4)", "mod(mdg4)" ], "22083": [ "Mod.mdg", "Mod.mdg" ], "22084": [ "Pc", "Pc" ], "22085": [ "Trl", "Trl" ], "22086": [ "pzg", "pzg" ], "23001": [ "DNase I hypersensitivity", "DNase I hypersensitivity" ], "23002": [ "Digital Genomic Footprinting", "Digital Genomic Footprinting" ], "23003": [ "FaireSeq", "Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing" ], "23004": [ "RepliSeq", "Quantifying DNA replication time using massively parallel sequencing" ], "23005": [ "MNase-seq", "Distinguishes nucleosome positioning by Sequencing" ], "23006": [ "DNase Control", "DNase Control" ], "23007": [ "RepliChip", "Quantifying DNA replication time using oligonucleotide arrays" ], "24001": [ "CTCF", "Transcriptional repressor CTCF" ], "24002": [ "Pol2(b)", "DNA Polymerase Pol2b" ], "24003": [ "Pol2", "DNA Polymerase Pol2" ], "24004": [ "c-Myc", "c-Myc" ], "24005": [ "eGFP-FOS", "eGFP-FOS" ], "24006": [ "eGFP-GATA2", "eGFP-GATA2" ], "24007": [ "eGFP-HDAC8", "eGFP-HDAC8" ], "24008": [ "eGFP-JunB", "eGFP-JunB" ], "24009": [ "eGFP-JunD", "eGFP-JunD" ], "24010": [ "eGFP-NR4A1", "eGFP-NR4A1" ], "24011": [ "P300", "P300" ], "24012": [ "ERalpha_a", "ERalpha_a" ], "24013": [ "PAX5-C20", "PAX5-C20" ], "24014": [ "NRSF", "NRSF" ], "24015": [ "TCF12", "TCF12" ], "24016": [ "SIX5", "SIX5" ], "24017": [ "RevXlinkChromatin", "RevXlinkChromatin" ], "24018": [ "GR", "GR" ], "24019": [ "RXRA", "RXRA" ], "24020": [ "BCL3", "BCL3" ], "24021": [ "GABP", "GABP" ], "24022": [ "USF-1", "USF-1" ], "24023": [ "SRF", "SRF" ], "24024": [ "FOXP2", "FOXP2" ], "24025": [ "YY1", "YY1" ], "24026": [ "PAX5-N19", "PAX5-N19" ], "24027": [ "SP1", "SP1" ], "24028": [ "TAF1", "TAF1" ], "24029": [ "ERalpha", "ERalpha" ], "24030": [ "MEF2A", "MEF2A" ], "24031": [ "ATF3", "ATF3" ], "24032": [ "FOSL1", "FOSL1" ], "24033": [ "PU.1", "PU.1" ], "24034": [ "HEY1", "HEY1" ], "24035": [ "EBF1", "EBF1" ], "24036": [ "KAP1", "KAP1" ], "24037": [ "BCL11A", "BCL11A" ], "24038": [ "IRF4", "IRF4" ], "24039": [ "ZBTB33", "ZBTB33" ], "24040": [ "POU2F2", "POU2F2" ], "24041": [ "Pol2-4H8", "Pol2-4H8" ], "24042": [ "CTCFL", "CTCFL" ], "24043": [ "SP2", "SP2" ], "24044": [ "FOXA2", "FOXA2" ], "24045": [ "HNF4G", "HNF4G" ], "24046": [ "TAF7", "TAF7" ], "24047": [ "THAP1", "THAP1" ], "24048": [ "FOXA1", "FOXA1" ], "24049": [ "ZEB1", "ZEB1" ], "24050": [ "Egr-1", "Egr-1" ], "24051": [ "ELF1", "ELF1" ], "24052": [ "Rad21", "Rad21" ], "24053": [ "MEF2C", "MEF2C" ], "24054": [ "Sin3Ak-20", "Sin3Ak-20" ], "24055": [ "NANOG", "NANOG" ], "24056": [ "POU5F1", "POU5F1" ], "24057": [ "ETS1", "ETS1" ], "24058": [ "FOSL2", "FOSL2" ], "24059": [ "HNF4A", "HNF4A" ], "24060": [ "E2F6", "E2F6" ], "24061": [ "ZBTB7A", "ZBTB7A" ], "24062": [ "BHLHE40", "BHLHE40" ], "24063": [ "JunD", "JunD" ], "24064": [ "BCLAF1", "BCLAF1" ], "24065": [ "GATA3", "GATA3" ], "24066": [ "Max", "Max" ], "24067": [ "Pbx3", "Pbx3" ], "24068": [ "BATF", "BATF" ], "24069": [ "GATA2", "GATA2" ], "24070": [ "ZNF274", "ZNF274" ], "24071": [ "TCF7L2", "TCF7L2" ], "24072": [ "ELK4", "ELK4" ], "24073": [ "RIP-Seq input", "RNA immunoprecipitations and sequencing, Input" ], "24074": [ "T7Tag", "T7Tag" ], "24075": [ "PABPC1", "PABPC1" ], "24076": [ "ELAVL1", "ELAVL1" ], "24601": [ "MAZ", "MAZ" ], "24602": [ "ARID3A", "ARID3A" ], "24603": [ "c-Jun", "c-Jun" ], "24604": [ "NFKB", "NFKB" ], "24605": [ "RFX5", "RFX5" ], "24606": [ "CHD2", "CHD2" ], "24607": [ "SREBP2", "SREBP2" ], "24608": [ "c-Fos", "c-Fos" ], "24609": [ "E2F4", "E2F4" ], "24610": [ "GATA-1", "GATA-1" ], "24611": [ "TFIIIC-110", "TFIIIC-110" ], "24612": [ "ZKSCAN1", "ZKSCAN1" ], "24613": [ "SMC3", "SMC3" ], "24614": [ "GTF2B", "GTF2B" ], "24615": [ "NF-YB", "NF-YB" ], "24616": [ "Znf143", "Znf143" ], "24617": [ "COREST", "COREST" ], "24618": [ "IKZF1", "IKZF1" ], "24619": [ "SETDB1", "SETDB1" ], "24620": [ "STAT1", "STAT1" ], "24621": [ "Pol3", "Pol3" ], "24622": [ "E2F1", "E2F1" ], "24623": [ "Mxi1", "Mxi1" ], "24624": [ "CEBPB", "CEBPB" ], "24625": [ "ZNF263", "ZNF263" ], "24626": [ "PRDM1", "PRDM1" ], "24627": [ "USF2", "USF2" ], "24628": [ "TBLR1", "TBLR1" ], "24629": [ "Bach1", "Bach1" ], "24630": [ "TBP", "TBP" ], "24631": [ "BRCA1", "BRCA1" ], "24632": [ "Ini1", "Ini1" ], "24633": [ "BAF170", "BAF170" ], "24634": [ "Pol2(phosphoS2)", "Pol2(phosphoS2)" ], "24635": [ "Nrf1", "Nrf1" ], "24636": [ "IRF3", "IRF3" ], "24637": [ "STAT3", "STAT3" ], "24638": [ "SIN3A", "SIN3A" ], "24639": [ "MafK", "MafK" ], "24640": [ "GCN5", "GCN5" ], "24641": [ "ATF1", "ATF1" ], "24642": [ "GATA-2", "GATA-2" ], "24643": [ "HA-E2F1", "HA-E2F1" ], "24644": [ "TR4", "TR4" ], "24645": [ "RPC155", "RPC155" ], "24646": [ "NELFe", "NELFe" ], "24647": [ "NF-E2", "NF-E2" ], "24648": [ "SPT20", "SPT20" ], "24649": [ "NF-YA", "NF-YA" ], "24650": [ "STAT2", "STAT2" ], "24651": [ "GTF2F1", "GTF2F1" ], "24652": [ "IRF1", "IRF1" ], "24653": [ "MafF", "MafF" ], "24654": [ "BDP1", "BDP1" ], "24655": [ "GRp20", "GRp20" ], "24656": [ "PGC1A", "PGC1A" ], "24657": [ "HSF1", "HSF1" ], "24658": [ "Brg1", "Brg1" ], "24659": [ "UBTF", "UBTF" ], "24660": [ "SREBP1", "SREBP1" ], "24661": [ "UBF", "UBF" ], "24662": [ "AP-2alpha", "AP-2alpha" ], "24663": [ "AP-2gamma", "AP-2gamma" ], "24664": [ "CtBP2", "CtBP2" ], "24665": [ "WHIP", "WHIP" ], "24666": [ "CCNT2", "CCNT2" ], "24667": [ "ZNF217", "ZNF217" ], "24668": [ "BRF1", "BRF1" ], "24669": [ "BAF155", "BAF155" ], "24670": [ "CEBPZ", "CEBPZ" ], "24671": [ "ELK1", "ELK1" ], "24672": [ "ZZZ3", "ZZZ3" ], "24673": [ "XRCC4", "XRCC4" ], "24674": [ "BRF2", "BRF2" ], "24675": [ "TAL1", "TAL1" ], "24676": [ "HMGN3", "HMGN3" ], "24677": [ "ERRA", "ERRA" ], "24678": [ "CREB1", "CREB1" ], "24679": [ "SP4", "SP4" ], "24680": [ "TEAD4", "TEAD4" ], "24681": [ "NR2F2", "NR2F2" ], "24682": [ "TRIM28", "TRIM28" ], "24683": [ "NFIC", "NFIC" ], "24684": [ "MTA3", "MTA3" ], "24685": [ "CBX3", "CBX3" ], "24686": [ "ATF2", "ATF2" ], "24687": [ "TCF3", "TCF3" ], "24688": [ "PML", "PML" ], "24689": [ "CEBPD", "CEBPD" ], "24690": [ "STAT5A", "STAT5A" ], "24691": [ "RUNX3", "RUNX3" ], "24692": [ "FOXM1", "FOXM1" ], "24693": [ "MBD4", "MBD4" ], "24694": [ "NFATC1", "NFATC1" ], "24695": [ "MYBL2", "MYBL2" ], "24696": [ "CDP", "CDP" ], "24697": [ "HCFC1", "HCFC1" ], "24698": [ "ZC3H11A", "ZC3H11A" ], "24699": [ "ZNF384", "ZNF384" ], "24700": [ "GATA1", "GATA1" ], "24701": [ "ZNF-MIZD-CP1", "ZNF-MIZD-CP1" ], "24702": [ "CHD4", "CHD4" ], "24703": [ "CBP", "CBP" ], "24704": [ "MyoD", "MyoD" ], "24705": [ "Myogenin", "Myogenin" ], "24706": [ "FLI1", "FLI1" ], "24707": [ "Nrf2", "Nrf2" ], "24708": [ "c-Myb", "c-Myb" ], "24709": [ "PAX5", "PAX5" ], "24710": [ "H3ac", "H3ac" ], "24711": [ "GABPA", "GABPA" ], "24712": [ "GATA4", "GATA4" ], "24713": [ "JUN", "JUN" ], "24714": [ "KAT2A", "KAT2A" ], "24715": [ "MYB", "MYB" ], "24716": [ "MYC", "MYC" ], "24717": [ "MYOD1", "MYOD1" ], "24718": [ "MYOG", "MYOG" ], "24719": [ "POLR2A", "POLR2A" ], "24720": [ "POLR2AphosphoS2", "POLR2AphosphoS2" ], "24721": [ "POLR2AphosphoS5", "POLR2AphosphoS5" ], "24722": [ "RCOR1", "RCOR1" ], "24723": [ "ZMIZ1", "ZMIZ1" ], "24724": [ "Dref", "Dref" ], "24725": [ "fs(1)h1L", "fs(1)h1L" ], "24726": [ "fs(1)h1SL", "fs(1)h1SL" ], "24727": [ "Nup98-96", "Nup98-96" ], "24728": [ "Su(H)", "Su(H)" ], "24729": [ "TfIIIC", "TfIIIC" ], "25001": [ "Exon array", "Exon array" ], "25002": [ "RNA-Seq", "RNA Sequencing" ], "25003": [ "smRNA-Seq", "smRNA-Seq" ], "25004": [ "Cage", "5 prime end cap analysis gene expression | CAGE promotor" ], "25005": [ "shRNA expression", "Short hairpin RNA expression" ], "25006": [ "RnaPet", "RNA Paired-End Tags" ], "26002": [ "Genotyping", "Genotyping (CNV and SNP)" ], "27001": [ "ChIA-PET", "Chromatin interaction analysis with paired-end tag sequencing" ], "27002": [ "5C", "Carbon-copy chromosome conformation capture" ], "27003": [ "Hi-C", "High-content genome conformation capture" ], "27004": [ "chromHMM", "chromatin state" ], "27005": [ "RAMPAGE", "Promoter Activity Profiling by Paired-end sequencing of 5'-complete cDNAs" ] }, "vocabulary": { "Assay": { "Epigenetic Mark": { "DNA Methylation": [ "21001", "21002", "21003", "21004", "21005", "21006", "21012", "21013", "21007" ], "DNA Hydroxymethylation": [ "21008", "21009", "21010", "21011" ], "Histone Mark": { "H2A": { "H2AK5": [ "22002" ], "H2AK9": [ "22066" ], "Other H2A": [ "22028", "22069" ] }, "H2B": { "H2BK12": [ "22007" ], "H2BK120": [ "22004" ], "H2BK15": [ "22006" ], "H2BK20": [ "22005" ], "H2BK5": [ "22003" ] }, "H3": { "H3K14": [ "22014" ], "H3K18": [ "22015" ], "H3K23": [ "22016", "22017" ], "H3K27": [ "22018", "22019", "22030", "22074" ], "H3K36": [ "22020", "22033" ], "H3K4": [ "22010", "22008", "22009", "22011", "22031" ], "H3K56": [ "22021" ], "H3K79": [ "22022", "22023", "22068" ], "H3K9": [ "22012", "22013", "22029", "22032", "22072", "22073" ], "H3K16": [ "22075" ], "H3T11": [ "22065" ], "Other H3": [ "24710", "22070", "22071" ] }, "H4": { "H4K12": [ "22067" ], "H4K20": [ "22025" ], "H4K5": [ "22027" ], "H4K8": [ "22024" ], "H4K91": [ "22026" ] }, "Other Histone Mark": [ "22000", "22001" ] }, "Histone-modifying enzymes": [ "22034", "22035", "22036", "22037", "22038", "22039", "22040", "22041", "22042", "22043", "22044", "22046", "22047", "22048", "22049", "22050", "22051", "22052", "22053", "22054", "22055", "22056", "22057", "22058", "22059", "22060", "22061", "22062", "22063", "22064", "22076", "22077", "22078", "22079", "22080", "22081", "22082", "22083", "22084", "22085", "22086" ], "Other Epigenetic Mark": [ "27004", "23001", "23002", "23003", "23004", "23005", "23006", "23007" ] }, "Expression": [ "25001", "25002", "25003", "25004", "25005", "25006", "27005" ], "Long Range Interaction": [ "27001", "27002", "27003" ], "Other Assays": [ "26002" ], "Transcription Regulator": { "ENCODE Control": [ "24007", "24006", "24005", "24008", "24009", "24010" ], "Other Transcription Regulator": [ "24001", "24002", "24003", "24004", "24011", "24012", "24013", "24014", "24015", "24016", "24017", "24018", "24019", "24020", "24021", "24022", "24023", "24024", "24025", "24026", "24027", "24028", "24029", "24030", "24031", "24032", "24033", "24034", "24035", "24036", "24037", "24038", "24039", "24040", "24041", "24042", "24043", "24044", "24045", "24046", "24047", "24048", "24049", "24050", "24051", "24052", "24053", "24054", "24055", "24056", "24057", "24058", "24059", "24060", "24061", "24062", "24063", "24064", "24065", "24066", "24067", "24068", "24069", "24070", "24071", "24072" ], "RIP-Seq": [ "24073", "24074", "24075", "24076" ], "Transcription Factor Binding Sites": [ "24601", "24602", "24603", "24604", "24605", "24606", "24607", "24608", "24609", "24610", "24611", "24612", "24613", "24614", "24615", "24616", "24617", "24618", "24619", "24620", "24621", "24622", "24623", "24624", "24625", "24626", "24627", "24628", "24629", "24630", "24631", "24632", "24633", "24634", "24635", "24636", "24637", "24638", "24639", "24640", "24641", "24642", "24643", "24644", "24645", "24646", "24647", "24648", "24649", "24650", "24651", "24652", "24653", "24654", "24655", "24656", "24657", "24658", "24659", "24660", "24661", "24662", "24663", "24664", "24665", "24666", "24667", "24668", "24669", "24670", "24671", "24672", "24673", "24674", "24675", "24676", "24677", "24678", "24679", "24680", "24681", "24682", "24683", "24684", "24685", "24686", "24687", "24688", "24689", "24690", "24691", "24692", "24693", "24694", "24695", "24696", "24697", "24698", "24699", "24700", "24701", "24702", "24703", "24704", "24705", "24706", "24707", "24708", "24709", "24711", "24712", "24713", "24714", "24715", "24716", "24717", "24718", "24719", "24720", "24721", "24722", "24723", "24724", "24725", "24726", "24727", "24728", "24729" ] } } } }