track EARelease3BIHistone #bigDataUrl EARelease3BIHistone.bigWig compositeTrack on shortLabel BI Histone longLabel Histone Modification by Chip-seq from REMC/Broad group edacc3 subGroup1 view Views ALN=Alignments COV=Coverage subGroup2 sampleType Sample_Type ADMSCCC=Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells AK=Adult_Kidney AL=Adult_Liver AN=Adipose_Nuclei BAC=Brain_Anterior_Caudate BCG=Brain_Cingulate_Gyrus BHM=Brain_Hippocampus_Middle BITL=Brain_Inferior_Temporal_Lobe BMDMSCCC=Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells BMFL=Brain_Mid_Frontal_Lobe BSN=Brain_Substantia_Nigra CCC=CD34_Cultured_Cells CfBMDMSCCC=Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells FB=Fetal_Brain FH=Fetal_Heart FL=Fetal_Lung HUES48=HUES48 HUES64=HUES64 HUES6=HUES6 RM=Rectal_Mucosa RSM=Rectal_Smooth_Mucosa SM=Skeletal_Muscle SSM=Stomach_Smooth_Muscle ESWA7=ES-WA7 MCD34=Mobilized_CD34_Primary_Cells CD34=CD34_Primary_Cells subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input subGroup4 donorID Donor/Library 1=1 112=112 123=123 27=27 28=28 30=30 31=31 3=3 4=4 5=5 57=57 58=58 59=59 60=60 63=63 92=92 93=93 94=94 95=95 NA=NA UWH23266=UWH23266 UWH23284=UWH23284 UWRO01480=UWRO01480 UWRO01492=UWRO01492 RO01480=RO01480 RO01517=RO01517 RO01549=RO01549 RO01562=RO01562 RO01549=RO01549 RO01562=RO01562 RO01480=RO01480 RO01536=RO01536 RO01562=RO01562 RO01562=RO01562 RO01562=RO01562 RO01517=RO01517 RO01535=RO01535 RO01549=RO01549 RO01562=RO01562 H22676=H22676 H23468=H23468 H22772=H22772 H22772=H22772 H22772=H22772 H22772=H22772 sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 3 visibility hide type bed 3 track EARelease3BIHistoneViewCOV #bigDataUrl EARelease3BIHistoneViewCOV.bigWig shortLabel Coverage view COV maxHeightPixels 64:32:16 subTrack EARelease3BIHistone track BI_MCD34_H3K27me3_RO01480 bigDataUrl BI_MCD34_H3K27me3_RO01480.bigWig shortLabel MCD34 H3K27me3 RO01480 longLabel MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01480 type bigWig noInherit on color 204,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 12771" sample_common_name="Mobilized CD34 Primary Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Upstate chip_antibody_lot=dam151401 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM669945 dateUnrestricted=2011-12-31 track BI_MCD34_H3K27me3_RO01517 bigDataUrl BI_MCD34_H3K27me3_RO01517.bigWig shortLabel MCD34 H3K27me3 RO01517 longLabel MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01517 type bigWig noInherit on color 204,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01517" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01517" donor_age="year 43" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773046 dateUnrestricted=2011-12-31 track BI_MCD34_H3K27me3_RO01549 bigDataUrl BI_MCD34_H3K27me3_RO01549.bigWig shortLabel MCD34 H3K27me3 RO01549 longLabel MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01549 type bigWig noInherit on color 204,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01549" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706844 dateUnrestricted=2011-12-31 track BI_MCD34_H3K27me3_RO01562 bigDataUrl BI_MCD34_H3K27me3_RO01562.bigWig shortLabel MCD34 H3K27me3 RO01562 longLabel MCD34 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01562 type bigWig noInherit on color 204,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773047 dateUnrestricted=2011-12-31 track BI_MCD34_H3K36me3_RO01549 bigDataUrl BI_MCD34_H3K36me3_RO01549.bigWig shortLabel MCD34 H3K36me3 RO01549 longLabel MCD34 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K36me3 donorID=RO01549 type bigWig noInherit on color 0,194,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01549" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706843 dateUnrestricted=2011-12-31 track BI_MCD34_H3K36me3_RO01562 bigDataUrl BI_MCD34_H3K36me3_RO01562.bigWig shortLabel MCD34 H3K36me3 RO01562 longLabel MCD34 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K36me3 donorID=RO01562 type bigWig noInherit on color 0,194,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773042 dateUnrestricted=2011-12-31 track BI_MCD34_H3K4me1_RO01480 bigDataUrl BI_MCD34_H3K4me1_RO01480.bigWig shortLabel MCD34 H3K4me1 RO01480 longLabel MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K4me1 donorID=RO01480 type bigWig noInherit on color 0,133,66 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01480" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01480" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706845 dateUnrestricted=2011-12-31 track BI_MCD34_H3K4me1_RO01536 bigDataUrl BI_MCD34_H3K4me1_RO01536.bigWig shortLabel MCD34 H3K4me1 RO01536 longLabel MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K4me1 donorID=RO01536 type bigWig noInherit on color 0,133,66 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01536" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM772734 dateUnrestricted=2011-12-31 track BI_MCD34_H3K4me1_RO01562 bigDataUrl BI_MCD34_H3K4me1_RO01562.bigWig shortLabel MCD34 H3K4me1 RO01562 longLabel MCD34 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K4me1 donorID=RO01562 type bigWig noInherit on color 0,133,66 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773043 dateUnrestricted=2011-12-31 track BI_MCD34_H3K4me3_RO01562 bigDataUrl BI_MCD34_H3K4me3_RO01562.bigWig shortLabel MCD34 H3K4me3 RO01562 longLabel MCD34 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01562 type bigWig noInherit on color 0,117,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773041 dateUnrestricted=2011-12-31 track BI_MCD34_H3K9me3_RO01562 bigDataUrl BI_MCD34_H3K9me3_RO01562.bigWig shortLabel MCD34 H3K9me3 RO01562 longLabel MCD34 H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K9me3 donorID=RO01562 type bigWig noInherit on color 179,0,92 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773049 dateUnrestricted=2011-12-31 track BI_MCD34_Input_RO01517 bigDataUrl BI_MCD34_Input_RO01517.bigWig shortLabel MCD34 Input RO01517 longLabel MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01517 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01517" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01517" donor_age="year 43" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773048 dateUnrestricted=2011-12-31 track BI_MCD34_Input_RO01535 bigDataUrl BI_MCD34_Input_RO01535.bigWig shortLabel MCD34 Input RO01535 longLabel MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01535 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01535" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773044 dateUnrestricted=2011-12-31 track BI_MCD34_Input_RO01549 bigDataUrl BI_MCD34_Input_RO01549.bigWig shortLabel MCD34 Input RO01549 longLabel MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01549 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01549" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706846 dateUnrestricted=2011-12-31 track BI_MCD34_Input_RO01562 bigDataUrl BI_MCD34_Input_RO01562.bigWig shortLabel MCD34 Input RO01562 longLabel MCD34 Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01562 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="RO 01562" sample_common_name="CD34 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM773045 dateUnrestricted=2011-12-31 track BI_Fetal_Brain_Input_H22676 bigDataUrl BI_Fetal_Brain_Input_H22676.bigWig shortLabel FB Input H22676 longLabel Fetal Brain Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FB assayType=Input donorID=H22676 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="BioSAli 186" sample_common_name="Fetal Brain" collection_method=Post-Mortem donor_health_status="presumed normal" molecule="genomic DNA" disease="presumed normal" tissue_type="Fetal Brain" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=Brain donor_id="UW H22676" biomaterial_provider="University of Washington" donor_age="120.0 Days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706851 dateUnrestricted=2012-09-05 track BI_Fetal_Lung_H3K27me3_H22772 bigDataUrl BI_Fetal_Lung_H3K27me3_H22772.bigWig shortLabel FL H3K27me3 H22772 longLabel Fetal Lung H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K27me3 donorID=H22772 type bigWig noInherit on color 204,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="BioSAli 187" sample_common_name="Fetal Lung" collection_method=Post-Mortem donor_health_status="presumed normal" molecule="genomic DNA" disease="presumed normal" tissue_type="Fetal Lung" donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=Lung donor_id="UW H22772" biomaterial_provider="University of Washington" donor_age="82 Days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706852 dateUnrestricted=2012-09-05 track BI_Fetal_Lung_H3K4me1_H22772 bigDataUrl BI_Fetal_Lung_H3K4me1_H22772.bigWig shortLabel FL H3K4me1 H22772 longLabel Fetal Lung H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K4me1 donorID=H22772 type bigWig noInherit on color 0,133,66 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="BioSAli 187" sample_common_name="Fetal Lung" collection_method=Post-Mortem donor_health_status="presumed normal" molecule="genomic DNA" disease="presumed normal" tissue_type="Fetal Lung" donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=Lung donor_id="UW H22772" biomaterial_provider="University of Washington" donor_age="82 Days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706853 dateUnrestricted=2012-09-05 track BI_Fetal_Lung_H3K9ac_H22772 bigDataUrl BI_Fetal_Lung_H3K9ac_H22772.bigWig shortLabel FL H3K9ac H22772 longLabel Fetal Lung H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K9ac donorID=H22772 type bigWig noInherit on color 84,168,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="BioSAli 187" sample_common_name="Fetal Lung" collection_method=Post-Mortem donor_health_status="presumed normal" molecule="genomic DNA" disease="presumed normal" tissue_type="Fetal Lung" donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=Lung donor_id="UW H22772" biomaterial_provider="University of Washington" donor_age="82 Days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706854 dateUnrestricted=2012-09-05 track BI_Fetal_Lung_Input_H22772 bigDataUrl BI_Fetal_Lung_Input_H22772.bigWig shortLabel FL Input H22772 longLabel Fetal Lung Input Histone Modification by Chip-seq Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=Input donorID=H22772 type bigWig noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="BioSAli 187" sample_common_name="Fetal Lung" collection_method=Post-Mortem donor_health_status="presumed normal" molecule="genomic DNA" disease="presumed normal" tissue_type="Fetal Lung" donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=Lung donor_id="UW H22772" biomaterial_provider="University of Washington" donor_age="82 Days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM706855 dateUnrestricted=2012-09-05 track BI_Adipose_Derived_Mesenchymal_H3K9ac_1 bigDataUrl BI_Adipose_Derived_Mesenchymal_H3K9ac_1.bigWig shortLabel ADMSC H3K9ac 1 longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.5474 Pcnt=96) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=ADMSCCC assayType=H3K9ac donorID=1 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=1 sample_common_name="Adipose Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5474 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.5254 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9974 IROC_Pcnt=84 POISSON_SCORE=0.5802 POISSON_Pcnt=96 GSM=GSM670020 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K27me3_92 bigDataUrl BI_Adipose_Nuclei_H3K27me3_92.bigWig shortLabel AN H3K27me3 92 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1136 Pcnt=30) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K27me3 donorID=92 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1136 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.0296 FINDPEAKS_Pcnt=30 IROC_SCORE=0.776 IROC_Pcnt=10 POISSON_SCORE=0.2993 POISSON_Pcnt=35 GSM=GSM669930 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K27me3_94 bigDataUrl BI_Adipose_Nuclei_H3K27me3_94.bigWig shortLabel AN H3K27me3 94 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1599 Pcnt=55) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K27me3 donorID=94 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1599 HOTSPOT_Pcnt=55 FINDPEAKS_SCORE=0.0611 FINDPEAKS_Pcnt=40 IROC_SCORE=0.8496 IROC_Pcnt=35 POISSON_SCORE=0.3715 POISSON_Pcnt=65 GSM=GSM670035 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K27me3_95 bigDataUrl BI_Adipose_Nuclei_H3K27me3_95.bigWig shortLabel AN H3K27me3 95 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1503 Pcnt=50) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K27me3 donorID=95 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1503 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0622 FINDPEAKS_Pcnt=45 IROC_SCORE=0.8528 IROC_Pcnt=40 POISSON_SCORE=0.383 POISSON_Pcnt=70 GSM=GSM670017 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_92 bigDataUrl BI_Adipose_Nuclei_H3K36me3_92.bigWig shortLabel AN H3K36me3 92 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3256 Pcnt=65) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K36me3 donorID=92 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3256 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.3214 FINDPEAKS_Pcnt=58 IROC_SCORE=0.9906 IROC_Pcnt=65 POISSON_SCORE=0.4877 POISSON_Pcnt=50 GSM=GSM669952 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_93 bigDataUrl BI_Adipose_Nuclei_H3K36me3_93.bigWig shortLabel AN H3K36me3 93 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2924 Pcnt=54) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K36me3 donorID=93 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2924 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.2211 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9693 IROC_Pcnt=46 POISSON_SCORE=0.3817 POISSON_Pcnt=31 GSM=GSM670014 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_94 bigDataUrl BI_Adipose_Nuclei_H3K36me3_94.bigWig shortLabel AN H3K36me3 94 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3287 Pcnt=69) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K36me3 donorID=94 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3287 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.3345 FINDPEAKS_Pcnt=62 IROC_SCORE=0.9904 IROC_Pcnt=62 POISSON_SCORE=0.503 POISSON_Pcnt=58 GSM=GSM669979 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_95 bigDataUrl BI_Adipose_Nuclei_H3K36me3_95.bigWig shortLabel AN H3K36me3 95 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4951 Pcnt=100) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K36me3 donorID=95 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4951 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.5477 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9983 IROC_Pcnt=100 POISSON_SCORE=0.6715 POISSON_Pcnt=96 GSM=GSM669997 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me1_92 bigDataUrl BI_Adipose_Nuclei_H3K4me1_92.bigWig shortLabel AN H3K4me1 92 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4587 Pcnt=68) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me1 donorID=92 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4587 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.427 FINDPEAKS_Pcnt=71 IROC_SCORE=0.9931 IROC_Pcnt=64 POISSON_SCORE=0.591 POISSON_Pcnt=75 GSM=GSM669908 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me1_93 bigDataUrl BI_Adipose_Nuclei_H3K4me1_93.bigWig shortLabel AN H3K4me1 93 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.474 Pcnt=75) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me1 donorID=93 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.474 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.4466 FINDPEAKS_Pcnt=75 IROC_SCORE=0.9948 IROC_Pcnt=68 POISSON_SCORE=0.5791 POISSON_Pcnt=64 GSM=GSM670045 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me1_94 bigDataUrl BI_Adipose_Nuclei_H3K4me1_94.bigWig shortLabel AN H3K4me1 94 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5409 Pcnt=82) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me1 donorID=94 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5409 HOTSPOT_Pcnt=82 FINDPEAKS_SCORE=0.5394 FINDPEAKS_Pcnt=82 IROC_SCORE=0.997 IROC_Pcnt=86 POISSON_SCORE=0.6535 POISSON_Pcnt=82 GSM=GSM669975 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_92 bigDataUrl BI_Adipose_Nuclei_H3K4me3_92.bigWig shortLabel AN H3K4me3 92 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4353 Pcnt=60) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me3 donorID=92 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4353 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.4303 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.4553 POISSON_Pcnt=56 GSM=GSM669925 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_93 bigDataUrl BI_Adipose_Nuclei_H3K4me3_93.bigWig shortLabel AN H3K4me3 93 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2851 Pcnt=36) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me3 donorID=93 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2851 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2537 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9996 IROC_Pcnt=64 POISSON_SCORE=0.3499 POISSON_Pcnt=36 GSM=GSM669998 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_94 bigDataUrl BI_Adipose_Nuclei_H3K4me3_94.bigWig shortLabel AN H3K4me3 94 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.3591 Pcnt=40) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me3 donorID=94 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3591 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.3095 FINDPEAKS_Pcnt=40 IROC_SCORE=0.981 IROC_Pcnt=12 POISSON_SCORE=0.4053 POISSON_Pcnt=48 GSM=GSM670041 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_95 bigDataUrl BI_Adipose_Nuclei_H3K4me3_95.bigWig shortLabel AN H3K4me3 95 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5141 Pcnt=68) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K4me3 donorID=95 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5141 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.503 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9959 IROC_Pcnt=36 POISSON_SCORE=0.5483 POISSON_Pcnt=68 GSM=GSM669988 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_92 bigDataUrl BI_Adipose_Nuclei_H3K9ac_92.bigWig shortLabel AN H3K9ac 92 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1718 Pcnt=16) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9ac donorID=92 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1718 HOTSPOT_Pcnt=16 FINDPEAKS_SCORE=0.1151 FINDPEAKS_Pcnt=16 IROC_SCORE=0.995 IROC_Pcnt=68 POISSON_SCORE=0.2523 POISSON_Pcnt=20 GSM=GSM669904 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_93 bigDataUrl BI_Adipose_Nuclei_H3K9ac_93.bigWig shortLabel AN H3K9ac 93 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2159 Pcnt=44) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9ac donorID=93 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2159 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.1408 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9889 IROC_Pcnt=24 POISSON_SCORE=0.2975 POISSON_Pcnt=44 GSM=GSM669922 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_94 bigDataUrl BI_Adipose_Nuclei_H3K9ac_94.bigWig shortLabel AN H3K9ac 94 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2325 Pcnt=68) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9ac donorID=94 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2325 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.1697 FINDPEAKS_Pcnt=52 IROC_SCORE=0.9926 IROC_Pcnt=52 POISSON_SCORE=0.3183 POISSON_Pcnt=64 GSM=GSM669938 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_95 bigDataUrl BI_Adipose_Nuclei_H3K9ac_95.bigWig shortLabel AN H3K9ac 95 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1957 Pcnt=32) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9ac donorID=95 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1957 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.1165 FINDPEAKS_Pcnt=20 IROC_SCORE=0.9968 IROC_Pcnt=80 POISSON_SCORE=0.2533 POISSON_Pcnt=24 GSM=GSM670027 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_92 bigDataUrl BI_Adipose_Nuclei_H3K9me3_92.bigWig shortLabel AN H3K9me3 92 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1619 Pcnt=69) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9me3 donorID=92 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1619 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.1001 FINDPEAKS_Pcnt=73 IROC_SCORE=0.8983 IROC_Pcnt=73 POISSON_SCORE=0.3042 POISSON_Pcnt=46 GSM=GSM669968 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_93 bigDataUrl BI_Adipose_Nuclei_H3K9me3_93.bigWig shortLabel AN H3K9me3 93 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1605 Pcnt=65) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9me3 donorID=93 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1605 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.0997 FINDPEAKS_Pcnt=69 IROC_SCORE=0.8735 IROC_Pcnt=62 POISSON_SCORE=0.3322 POISSON_Pcnt=58 GSM=GSM669981 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_94 bigDataUrl BI_Adipose_Nuclei_H3K9me3_94.bigWig shortLabel AN H3K9me3 94 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1991 Pcnt=77) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9me3 donorID=94 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1991 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.1377 FINDPEAKS_Pcnt=77 IROC_SCORE=0.8998 IROC_Pcnt=77 POISSON_SCORE=0.3728 POISSON_Pcnt=77 GSM=GSM669976 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_95 bigDataUrl BI_Adipose_Nuclei_H3K9me3_95.bigWig shortLabel AN H3K9me3 95 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.2458 Pcnt=96) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=H3K9me3 donorID=95 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2458 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.1924 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9244 IROC_Pcnt=88 POISSON_SCORE=0.4211 POISSON_Pcnt=88 GSM=GSM669933 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_92 bigDataUrl BI_Adipose_Nuclei_Input_92.bigWig shortLabel AN Input 92 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=Input donorID=92 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 HOTSPOT_Pcnt=17 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0248 POISSON_Pcnt=7 GSM=GSM669934 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_93 bigDataUrl BI_Adipose_Nuclei_Input_93.bigWig shortLabel AN Input 93 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.015 Pcnt=57) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=Input donorID=93 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.015 HOTSPOT_Pcnt=57 FINDPEAKS_SCORE=0.0072 FINDPEAKS_Pcnt=77 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0531 POISSON_Pcnt=47 GSM=GSM670043 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_94 bigDataUrl BI_Adipose_Nuclei_Input_94.bigWig shortLabel AN Input 94 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0096 Pcnt=40) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=Input donorID=94 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0096 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0071 FINDPEAKS_Pcnt=73 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0413 POISSON_Pcnt=37 GSM=GSM669940 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_95 bigDataUrl BI_Adipose_Nuclei_Input_95.bigWig shortLabel AN Input 95 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.005 Pcnt=23) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AN assayType=Input donorID=95 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.005 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0064 FINDPEAKS_Pcnt=40 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0274 POISSON_Pcnt=20 GSM=GSM669984 dateUnrestricted=2011-12-31 track BI_Adult_Kidney_H3K4me1_27 bigDataUrl BI_Adult_Kidney_H3K4me1_27.bigWig shortLabel AK H3K4me1 27 longLabel Adult Kidney H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.203 Pcnt=18) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AK assayType=H3K4me1 donorID=27 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=36 sample_common_name="Adult Kidney" collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.203 HOTSPOT_Pcnt=18 FINDPEAKS_SCORE=0.0991 FINDPEAKS_Pcnt=14 IROC_SCORE=0.9154 IROC_Pcnt=14 POISSON_SCORE=0.3591 POISSON_Pcnt=11 GSM=GSM670025 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K36me3_4 bigDataUrl BI_Adult_Liver_H3K36me3_4.bigWig shortLabel AL H3K36me3 4 longLabel Adult Liver H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4527 Pcnt=96) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AL assayType=H3K36me3 donorID=4 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4527 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.5477 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9979 IROC_Pcnt=96 POISSON_SCORE=0.6952 POISSON_Pcnt=100 GSM=GSM669931 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K4me1_4 bigDataUrl BI_Adult_Liver_H3K4me1_4.bigWig shortLabel AL H3K4me1 4 longLabel Adult Liver H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4334 Pcnt=64) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AL assayType=H3K4me1 donorID=4 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4334 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4242 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9962 IROC_Pcnt=75 POISSON_SCORE=0.5533 POISSON_Pcnt=61 GSM=GSM669972 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K9me3_4 bigDataUrl BI_Adult_Liver_H3K9me3_4.bigWig shortLabel AL H3K9me3 4 longLabel Adult Liver H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1457 Pcnt=54) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AL assayType=H3K9me3 donorID=4 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1457 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.0918 FINDPEAKS_Pcnt=62 IROC_SCORE=0.8709 IROC_Pcnt=50 POISSON_SCORE=0.3566 POISSON_Pcnt=73 GSM=GSM669986 dateUnrestricted=2011-12-31 track BI_Adult_Liver_Input_3 bigDataUrl BI_Adult_Liver_Input_3.bigWig shortLabel AL Input 3 longLabel Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0183 Pcnt=67) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AL assayType=Input donorID=3 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=3 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=3 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0183 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0553 POISSON_Pcnt=53 GSM=GSM670008 dateUnrestricted=2011-12-31 track BI_Adult_Liver_Input_5 bigDataUrl BI_Adult_Liver_Input_5.bigWig shortLabel AL Input 5 longLabel Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0242 Pcnt=73) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=AL assayType=Input donorID=5 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=5 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=5 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0242 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.0073 FINDPEAKS_Pcnt=80 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0655 POISSON_Pcnt=70 GSM=GSM669910 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_58.bigWig shortLabel BMDMSC H3K27me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1976 Pcnt=60) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K27me3 donorID=58 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1976 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.1132 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9079 IROC_Pcnt=55 POISSON_SCORE=0.4547 POISSON_Pcnt=80 GSM=GSM670009 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59.bigWig shortLabel BMDMSC H3K27me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1422 Pcnt=40) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K27me3 donorID=59 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1422 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0632 FINDPEAKS_Pcnt=50 IROC_SCORE=0.8697 IROC_Pcnt=45 POISSON_SCORE=0.3512 POISSON_Pcnt=50 GSM=GSM670007 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_60.bigWig shortLabel BMDMSC H3K27me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1304 Pcnt=35) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K27me3 donorID=60 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1304 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.0488 FINDPEAKS_Pcnt=35 IROC_SCORE=0.8416 IROC_Pcnt=30 POISSON_SCORE=0.3433 POISSON_Pcnt=45 GSM=GSM669957 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_58.bigWig shortLabel BMDMSC H3K36me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2855 Pcnt=50) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K36me3 donorID=58 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2855 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.3022 FINDPEAKS_Pcnt=54 IROC_SCORE=0.985 IROC_Pcnt=54 POISSON_SCORE=0.5102 POISSON_Pcnt=65 GSM=GSM670037 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59.bigWig shortLabel BMDMSC H3K36me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2426 Pcnt=42) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K36me3 donorID=59 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2426 HOTSPOT_Pcnt=42 FINDPEAKS_SCORE=0.2227 FINDPEAKS_Pcnt=50 IROC_SCORE=0.9735 IROC_Pcnt=50 POISSON_SCORE=0.4506 POISSON_Pcnt=46 GSM=GSM669996 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60.bigWig shortLabel BMDMSC H3K36me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.194 Pcnt=35) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K36me3 donorID=60 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.194 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.146 FINDPEAKS_Pcnt=38 IROC_SCORE=0.9463 IROC_Pcnt=38 POISSON_SCORE=0.4134 POISSON_Pcnt=38 GSM=GSM669951 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58.bigWig shortLabel BMDMSC H3K4me1 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5693 Pcnt=89) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me1 donorID=58 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5693 HOTSPOT_Pcnt=89 FINDPEAKS_SCORE=0.5675 FINDPEAKS_Pcnt=89 IROC_SCORE=0.9985 IROC_Pcnt=96 POISSON_SCORE=0.6662 POISSON_Pcnt=89 GSM=GSM669911 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59.bigWig shortLabel BMDMSC H3K4me1 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3279 Pcnt=36) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me1 donorID=59 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3279 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2691 FINDPEAKS_Pcnt=43 IROC_SCORE=0.9796 IROC_Pcnt=54 POISSON_SCORE=0.438 POISSON_Pcnt=36 GSM=GSM669920 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60.bigWig shortLabel BMDMSC H3K4me1 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3071 Pcnt=32) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me1 donorID=60 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3071 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.2346 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9741 IROC_Pcnt=50 POISSON_SCORE=0.4041 POISSON_Pcnt=32 GSM=GSM669980 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_58.bigWig shortLabel BMDMSC H3K4me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.461 Pcnt=64) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me3 donorID=58 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.461 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4313 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9927 IROC_Pcnt=20 POISSON_SCORE=0.4979 POISSON_Pcnt=64 GSM=GSM669924 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59.bigWig shortLabel BMDMSC H3K4me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4278 Pcnt=56) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me3 donorID=59 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4278 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.4171 FINDPEAKS_Pcnt=56 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.4435 POISSON_Pcnt=52 GSM=GSM669991 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60.bigWig shortLabel BMDMSC H3K4me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4154 Pcnt=52) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K4me3 donorID=60 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4154 HOTSPOT_Pcnt=52 FINDPEAKS_SCORE=0.3889 FINDPEAKS_Pcnt=48 IROC_SCORE=0.9949 IROC_Pcnt=32 POISSON_SCORE=0.4568 POISSON_Pcnt=60 GSM=GSM670019 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_58.bigWig shortLabel BMDMSC H3K9ac 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3973 Pcnt=80) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9ac donorID=58 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3973 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.3634 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9986 IROC_Pcnt=100 POISSON_SCORE=0.421 POISSON_Pcnt=80 GSM=GSM669937 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59.bigWig shortLabel BMDMSC H3K9ac 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1158 Pcnt=4) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9ac donorID=59 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1158 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0744 FINDPEAKS_Pcnt=8 IROC_SCORE=0.9903 IROC_Pcnt=36 POISSON_SCORE=0.1712 POISSON_Pcnt=4 GSM=GSM669999 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_60.bigWig shortLabel BMDMSC H3K9ac 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4019 Pcnt=84) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9ac donorID=60 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4019 HOTSPOT_Pcnt=84 FINDPEAKS_SCORE=0.3734 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9981 IROC_Pcnt=96 POISSON_SCORE=0.431 POISSON_Pcnt=84 GSM=GSM669983 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58.bigWig shortLabel BMDMSC H3K9me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0916 Pcnt=35) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9me3 donorID=58 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0916 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.0384 FINDPEAKS_Pcnt=35 IROC_SCORE=0.7202 IROC_Pcnt=15 POISSON_SCORE=0.2831 POISSON_Pcnt=42 GSM=GSM670018 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59.bigWig shortLabel BMDMSC H3K9me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0432 Pcnt=4) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9me3 donorID=59 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0432 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0183 FINDPEAKS_Pcnt=8 IROC_SCORE=0.9439 IROC_Pcnt=92 POISSON_SCORE=0.124 POISSON_Pcnt=4 GSM=GSM669989 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_60.bigWig shortLabel BMDMSC H3K9me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0559 Pcnt=12) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=H3K9me3 donorID=60 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0559 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.0221 FINDPEAKS_Pcnt=27 IROC_SCORE=0.878 IROC_Pcnt=65 POISSON_SCORE=0.2031 POISSON_Pcnt=27 GSM=GSM670028 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_57 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_57.bigWig shortLabel BMDMSC Input 57 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0145 Pcnt=53) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=Input donorID=57 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76A sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0145 HOTSPOT_Pcnt=53 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=13 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0611 POISSON_Pcnt=60 GSM=GSM669946 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_58 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_58.bigWig shortLabel BMDMSC Input 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0166 Pcnt=63) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=Input donorID=58 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0166 HOTSPOT_Pcnt=63 FINDPEAKS_SCORE=0.0059 FINDPEAKS_Pcnt=23 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.064 POISSON_Pcnt=67 GSM=GSM669958 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_59 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_59.bigWig shortLabel BMDMSC Input 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0142 Pcnt=50) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=Input donorID=59 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0142 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0061 FINDPEAKS_Pcnt=30 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0614 POISSON_Pcnt=63 GSM=GSM669987 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_60 bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_60.bigWig shortLabel BMDMSC Input 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0098 Pcnt=43) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMDMSCCC assayType=Input donorID=60 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0098 HOTSPOT_Pcnt=43 FINDPEAKS_SCORE=0.0059 FINDPEAKS_Pcnt=23 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0535 POISSON_Pcnt=50 GSM=GSM670006 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K27me3_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K27me3_112.bigWig shortLabel BAC H3K27me3 12 longLabel Brain Anterior Caudate H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0409 Pcnt=5) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K27me3 donorID=112 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0409 HOTSPOT_Pcnt=5 FINDPEAKS_SCORE=0.0085 FINDPEAKS_Pcnt=10 IROC_SCORE=0.8331 IROC_Pcnt=25 POISSON_SCORE=0.1575 POISSON_Pcnt=10 GSM=GSM669915 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K36me3_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K36me3_112.bigWig shortLabel BAC H3K36me3 12 longLabel Brain Anterior Caudate H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1756 Pcnt=23) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1756 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0894 FINDPEAKS_Pcnt=27 IROC_SCORE=0.9213 IROC_Pcnt=31 POISSON_SCORE=0.3426 POISSON_Pcnt=27 GSM=GSM670026 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K4me1_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K4me1_112.bigWig shortLabel BAC H3K4me1 12 longLabel Brain Anterior Caudate H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=7) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 HOTSPOT_Pcnt=7 FINDPEAKS_SCORE=0.0737 FINDPEAKS_Pcnt=7 IROC_SCORE=0.8915 IROC_Pcnt=7 POISSON_SCORE=0.3855 POISSON_Pcnt=21 GSM=GSM669970 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K4me3_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K4me3_112.bigWig shortLabel BAC H3K4me3 12 longLabel Brain Anterior Caudate H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2409 Pcnt=28) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2409 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.2131 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.2842 POISSON_Pcnt=32 GSM=GSM670031 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K9ac_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K9ac_112.bigWig shortLabel BAC H3K9ac 12 longLabel Brain Anterior Caudate H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2092 Pcnt=40) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2092 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.144 FINDPEAKS_Pcnt=40 IROC_SCORE=0.9885 IROC_Pcnt=16 POISSON_SCORE=0.2972 POISSON_Pcnt=40 GSM=GSM669950 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K9me3_112 bigDataUrl BI_Brain_Anterior_Caudate_H3K9me3_112.bigWig shortLabel BAC H3K9me3 12 longLabel Brain Anterior Caudate H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0818 Pcnt=31) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0818 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.0254 FINDPEAKS_Pcnt=31 IROC_SCORE=0.8004 IROC_Pcnt=31 POISSON_SCORE=0.2092 POISSON_Pcnt=31 GSM=GSM669994 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_Input_112 bigDataUrl BI_Brain_Anterior_Caudate_Input_112.bigWig shortLabel BAC Input 12 longLabel Brain Anterior Caudate Input Signal from REMC/Broad (Hotspot_Score=0.0065 Pcnt=33) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BAC assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0065 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.0071 FINDPEAKS_Pcnt=73 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0298 POISSON_Pcnt=27 GSM=GSM669978 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K36me3_112 bigDataUrl BI_Brain_Cingulate_Gyrus_H3K36me3_112.bigWig shortLabel BCG H3K36me3 12 longLabel Brain Cingulate Gyrus H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1696 Pcnt=19) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1696 HOTSPOT_Pcnt=19 FINDPEAKS_SCORE=0.0807 FINDPEAKS_Pcnt=19 IROC_SCORE=0.9124 IROC_Pcnt=27 POISSON_SCORE=0.3265 POISSON_Pcnt=19 GSM=GSM669985 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K4me1_112 bigDataUrl BI_Brain_Cingulate_Gyrus_H3K4me1_112.bigWig shortLabel BCG H3K4me1 12 longLabel Brain Cingulate Gyrus H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2017 Pcnt=14) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2017 HOTSPOT_Pcnt=14 FINDPEAKS_SCORE=0.0918 FINDPEAKS_Pcnt=11 IROC_SCORE=0.8996 IROC_Pcnt=11 POISSON_SCORE=0.3775 POISSON_Pcnt=18 GSM=GSM670033 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K4me3_112 bigDataUrl BI_Brain_Cingulate_Gyrus_H3K4me3_112.bigWig shortLabel BCG H3K4me3 12 longLabel Brain Cingulate Gyrus H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2161 Pcnt=20) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2161 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.1888 FINDPEAKS_Pcnt=20 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.2513 POISSON_Pcnt=16 GSM=GSM669905 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K9ac_112 bigDataUrl BI_Brain_Cingulate_Gyrus_H3K9ac_112.bigWig shortLabel BCG H3K9ac 12 longLabel Brain Cingulate Gyrus H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2278 Pcnt=56) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2278 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.1712 FINDPEAKS_Pcnt=60 IROC_SCORE=0.988 IROC_Pcnt=12 POISSON_SCORE=0.3249 POISSON_Pcnt=68 GSM=GSM670032 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K9me3_112 bigDataUrl BI_Brain_Cingulate_Gyrus_H3K9me3_112.bigWig shortLabel BCG H3K9me3 12 longLabel Brain Cingulate Gyrus H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0627 Pcnt=19) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0627 HOTSPOT_Pcnt=19 FINDPEAKS_SCORE=0.0197 FINDPEAKS_Pcnt=15 IROC_SCORE=0.8419 IROC_Pcnt=42 POISSON_SCORE=0.1598 POISSON_Pcnt=15 GSM=GSM669923 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_Input_112 bigDataUrl BI_Brain_Cingulate_Gyrus_Input_112.bigWig shortLabel BCG Input 12 longLabel Brain Cingulate Gyrus Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BCG assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 HOTSPOT_Pcnt=17 FINDPEAKS_SCORE=0.0066 FINDPEAKS_Pcnt=43 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0263 POISSON_Pcnt=17 GSM=GSM670003 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K27me3_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K27me3_112.bigWig shortLabel BHM H3K27me3 12 longLabel Brain Hippocampus Middle H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0628 Pcnt=15) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K27me3 donorID=112 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0628 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0101 FINDPEAKS_Pcnt=15 IROC_SCORE=0.7857 IROC_Pcnt=15 POISSON_SCORE=0.1723 POISSON_Pcnt=25 GSM=GSM669913 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K36me3_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K36me3_112.bigWig shortLabel BHM H3K36me3 12 longLabel Brain Hippocampus Middle H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=15) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1637 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0728 FINDPEAKS_Pcnt=15 IROC_SCORE=0.9114 IROC_Pcnt=23 POISSON_SCORE=0.302 POISSON_Pcnt=15 GSM=GSM670002 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K4me1_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K4me1_112.bigWig shortLabel BHM H3K4me1 12 longLabel Brain Hippocampus Middle H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2108 Pcnt=21) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2108 HOTSPOT_Pcnt=21 FINDPEAKS_SCORE=0.1132 FINDPEAKS_Pcnt=21 IROC_SCORE=0.9181 IROC_Pcnt=18 POISSON_SCORE=0.3721 POISSON_Pcnt=14 GSM=GSM669962 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K4me3_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K4me3_112.bigWig shortLabel BHM H3K4me3 12 longLabel Brain Hippocampus Middle H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1582 Pcnt=4) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1582 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.1271 FINDPEAKS_Pcnt=8 IROC_SCORE=0.999 IROC_Pcnt=60 POISSON_SCORE=0.1988 POISSON_Pcnt=4 GSM=GSM670022 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K9ac_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K9ac_112.bigWig shortLabel BHM H3K9ac 12 longLabel Brain Hippocampus Middle H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2257 Pcnt=48) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2257 HOTSPOT_Pcnt=48 FINDPEAKS_SCORE=0.1722 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9912 IROC_Pcnt=40 POISSON_SCORE=0.3179 POISSON_Pcnt=60 GSM=GSM669906 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K9me3_112 bigDataUrl BI_Brain_Hippocampus_Middle_H3K9me3_112.bigWig shortLabel BHM H3K9me3 12 longLabel Brain Hippocampus Middle H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.053 Pcnt=8) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.053 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.016 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8792 IROC_Pcnt=69 POISSON_SCORE=0.1304 POISSON_Pcnt=8 GSM=GSM670001 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_Input_112 bigDataUrl BI_Brain_Hippocampus_Middle_Input_112.bigWig shortLabel BHM Input 12 longLabel Brain Hippocampus Middle Input Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=20) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BHM assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0047 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0062 FINDPEAKS_Pcnt=33 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0249 POISSON_Pcnt=13 GSM=GSM669971 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K36me3_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K36me3_112.bigWig shortLabel BITL H3K36me3 12 longLabel Brain Inferior Temporal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1894 Pcnt=31) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1894 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.1086 FINDPEAKS_Pcnt=31 IROC_SCORE=0.9296 IROC_Pcnt=35 POISSON_SCORE=0.3414 POISSON_Pcnt=23 GSM=GSM670011 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K4me1_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K4me1_112.bigWig shortLabel BITL H3K4me1 12 longLabel Brain Inferior Temporal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.234 Pcnt=29) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.234 HOTSPOT_Pcnt=29 FINDPEAKS_SCORE=0.1383 FINDPEAKS_Pcnt=29 IROC_SCORE=0.9349 IROC_Pcnt=25 POISSON_SCORE=0.3994 POISSON_Pcnt=29 GSM=GSM670036 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K4me3_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K4me3_112.bigWig shortLabel BITL H3K4me3 12 longLabel Brain Inferior Temporal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2304 Pcnt=24) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2304 HOTSPOT_Pcnt=24 FINDPEAKS_SCORE=0.2017 FINDPEAKS_Pcnt=24 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.2677 POISSON_Pcnt=20 GSM=GSM669992 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K9ac_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K9ac_112.bigWig shortLabel BITL H3K9ac 12 longLabel Brain Inferior Temporal Lobe H3K9ac Signal from REMC/Broad (Hotspot_Score=0.232 Pcnt=64) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.232 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.1726 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9891 IROC_Pcnt=28 POISSON_SCORE=0.3156 POISSON_Pcnt=56 GSM=GSM669918 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K9me3_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K9me3_112.bigWig shortLabel BITL H3K9me3 12 longLabel Brain Inferior Temporal Lobe H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0816 Pcnt=27) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0816 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.0198 FINDPEAKS_Pcnt=19 IROC_SCORE=0.7569 IROC_Pcnt=23 POISSON_SCORE=0.1716 POISSON_Pcnt=23 GSM=GSM670005 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_Input_112 bigDataUrl BI_Brain_Inferior_Temporal_Lobe_Input_112.bigWig shortLabel BITL Input 12 longLabel Brain Inferior Temporal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0095 Pcnt=37) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BITL assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0095 HOTSPOT_Pcnt=37 FINDPEAKS_SCORE=0.007 FINDPEAKS_Pcnt=67 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0361 POISSON_Pcnt=33 GSM=GSM670010 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K36me3_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K36me3_112.bigWig shortLabel BMFL H3K36me3 12 longLabel Brain Mid Frontal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1489 Pcnt=12) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1489 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.0536 FINDPEAKS_Pcnt=12 IROC_SCORE=0.89 IROC_Pcnt=15 POISSON_SCORE=0.298 POISSON_Pcnt=12 GSM=GSM669982 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K4me1_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K4me1_112.bigWig shortLabel BMFL H3K4me1 12 longLabel Brain Mid Frontal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1575 Pcnt=4) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1575 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0437 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8498 IROC_Pcnt=4 POISSON_SCORE=0.3314 POISSON_Pcnt=4 GSM=GSM670015 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K4me3_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K4me3_112.bigWig shortLabel BMFL H3K4me3 12 longLabel Brain Mid Frontal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2001 Pcnt=16) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2001 HOTSPOT_Pcnt=16 FINDPEAKS_SCORE=0.1774 FINDPEAKS_Pcnt=16 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.2343 POISSON_Pcnt=12 GSM=GSM670016 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K9ac_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K9ac_112.bigWig shortLabel BMFL H3K9ac 12 longLabel Brain Mid Frontal Lobe H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1811 Pcnt=28) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1811 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.1223 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9871 IROC_Pcnt=8 POISSON_SCORE=0.2746 POISSON_Pcnt=28 GSM=GSM670021 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K9me3_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K9me3_112.bigWig shortLabel BMFL H3K9me3 12 longLabel Brain Mid Frontal Lobe H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0675 Pcnt=23) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0675 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0209 FINDPEAKS_Pcnt=23 IROC_SCORE=0.8191 IROC_Pcnt=38 POISSON_SCORE=0.1686 POISSON_Pcnt=19 GSM=GSM669965 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_Input_112 bigDataUrl BI_Brain_Mid_Frontal_Lobe_Input_112.bigWig shortLabel BMFL Input 12 longLabel Brain Mid Frontal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=7) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BMFL assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0042 HOTSPOT_Pcnt=7 FINDPEAKS_SCORE=0.0064 FINDPEAKS_Pcnt=40 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0232 POISSON_Pcnt=3 GSM=GSM669960 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K27me3_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K27me3_112.bigWig shortLabel BSN H3K27me3 12 longLabel Brain Substantia Nigra H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0432 Pcnt=10) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K27me3 donorID=112 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0432 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0066 FINDPEAKS_Pcnt=5 IROC_SCORE=0.8099 IROC_Pcnt=20 POISSON_SCORE=0.1401 POISSON_Pcnt=5 GSM=GSM669953 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K36me3_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K36me3_112.bigWig shortLabel BSN H3K36me3 12 longLabel Brain Substantia Nigra H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1426 Pcnt=8) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K36me3 donorID=112 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1426 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.049 FINDPEAKS_Pcnt=8 IROC_SCORE=0.8812 IROC_Pcnt=12 POISSON_SCORE=0.2891 POISSON_Pcnt=8 GSM=GSM669947 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K4me1_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K4me1_112.bigWig shortLabel BSN H3K4me1 12 longLabel Brain Substantia Nigra H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2177 Pcnt=25) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K4me1 donorID=112 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2177 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.1215 FINDPEAKS_Pcnt=25 IROC_SCORE=0.9255 IROC_Pcnt=21 POISSON_SCORE=0.3937 POISSON_Pcnt=25 GSM=GSM669941 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K4me3_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K4me3_112.bigWig shortLabel BSN H3K4me3 12 longLabel Brain Substantia Nigra H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1703 Pcnt=8) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K4me3 donorID=112 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1703 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.1289 FINDPEAKS_Pcnt=12 IROC_SCORE=0.9984 IROC_Pcnt=52 POISSON_SCORE=0.2145 POISSON_Pcnt=8 GSM=GSM670038 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K9ac_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K9ac_112.bigWig shortLabel BSN H3K9ac 12 longLabel Brain Substantia Nigra H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2078 Pcnt=36) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K9ac donorID=112 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2078 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.1534 FINDPEAKS_Pcnt=44 IROC_SCORE=0.9887 IROC_Pcnt=20 POISSON_SCORE=0.2985 POISSON_Pcnt=48 GSM=GSM669977 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K9me3_112 bigDataUrl BI_Brain_Substantia_Nigra_H3K9me3_112.bigWig shortLabel BSN H3K9me3 12 longLabel Brain Substantia Nigra H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0589 Pcnt=15) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=H3K9me3 donorID=112 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0589 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0186 FINDPEAKS_Pcnt=12 IROC_SCORE=0.8724 IROC_Pcnt=54 POISSON_SCORE=0.1508 POISSON_Pcnt=12 GSM=GSM669973 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_Input_112 bigDataUrl BI_Brain_Substantia_Nigra_Input_112.bigWig shortLabel BSN Input 12 longLabel Brain Substantia Nigra Input Signal from REMC/Broad (Hotspot_Score=0.0045 Pcnt=10) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=BSN assayType=Input donorID=112 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0045 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0058 FINDPEAKS_Pcnt=17 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0249 POISSON_Pcnt=13 GSM=GSM670042 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K36me3_123 bigDataUrl BI_CD34_Cultured_Cells_H3K36me3_123.bigWig shortLabel CD34 H3K36me3 23 longLabel CD34 Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3843 Pcnt=92) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CCC assayType=H3K36me3 donorID=123 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3843 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.4564 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9961 IROC_Pcnt=92 POISSON_SCORE=0.605 POISSON_Pcnt=92 GSM=GSM669955 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K4me1_123 bigDataUrl BI_CD34_Cultured_Cells_H3K4me1_123.bigWig shortLabel CD34 H3K4me1 23 longLabel CD34 Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.421 Pcnt=57) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CCC assayType=H3K4me1 donorID=123 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.421 HOTSPOT_Pcnt=57 FINDPEAKS_SCORE=0.3943 FINDPEAKS_Pcnt=61 IROC_SCORE=0.9955 IROC_Pcnt=71 POISSON_SCORE=0.5144 POISSON_Pcnt=54 GSM=GSM669907 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K4me3_123 bigDataUrl BI_CD34_Cultured_Cells_H3K4me3_123.bigWig shortLabel CD34 H3K4me3 23 longLabel CD34 Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2771 Pcnt=32) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CCC assayType=H3K4me3 donorID=123 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2771 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.2682 FINDPEAKS_Pcnt=36 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.2788 POISSON_Pcnt=24 GSM=GSM669943 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K9me3_123 bigDataUrl BI_CD34_Cultured_Cells_H3K9me3_123.bigWig shortLabel CD34 H3K9me3 23 longLabel CD34 Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1571 Pcnt=62) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CCC assayType=H3K9me3 donorID=123 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1571 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.0898 FINDPEAKS_Pcnt=58 IROC_SCORE=0.8668 IROC_Pcnt=46 POISSON_SCORE=0.2739 POISSON_Pcnt=35 GSM=GSM669995 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_Input_123 bigDataUrl BI_CD34_Cultured_Cells_Input_123.bigWig shortLabel CD34 Input 23 longLabel CD34 Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0273 Pcnt=80) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CCC assayType=Input donorID=123 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0273 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9752 IROC_Pcnt=52 POISSON_SCORE=0.0705 POISSON_Pcnt=73 GSM=GSM669929 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_57.bigWig shortLabel CfBMDMSC H3K27me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1991 Pcnt=65) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K27me3 donorID=57 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1991 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.1222 FINDPEAKS_Pcnt=70 IROC_SCORE=0.9156 IROC_Pcnt=65 POISSON_SCORE=0.4823 POISSON_Pcnt=85 GSM=GSM669959 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59.bigWig shortLabel CfBMDMSC H3K27me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=75) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K27me3 donorID=59 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.214 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.1474 FINDPEAKS_Pcnt=75 IROC_SCORE=0.927 IROC_Pcnt=75 POISSON_SCORE=0.5054 POISSON_Pcnt=95 GSM=GSM669916 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_57.bigWig shortLabel CfBMDMSC H3K36me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3624 Pcnt=88) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K36me3 donorID=57 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3624 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.3933 FINDPEAKS_Pcnt=81 IROC_SCORE=0.9929 IROC_Pcnt=77 POISSON_SCORE=0.5575 POISSON_Pcnt=81 GSM=GSM670012 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59.bigWig shortLabel CfBMDMSC H3K36me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3415 Pcnt=77) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K36me3 donorID=59 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3415 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.4005 FINDPEAKS_Pcnt=85 IROC_SCORE=0.992 IROC_Pcnt=73 POISSON_SCORE=0.5752 POISSON_Pcnt=85 GSM=GSM669914 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60.bigWig shortLabel CfBMDMSC H3K36me3 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3514 Pcnt=85) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K36me3 donorID=60 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3514 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.4295 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9949 IROC_Pcnt=85 POISSON_SCORE=0.5925 POISSON_Pcnt=88 GSM=GSM669935 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_57.bigWig shortLabel CfBMDMSC H3K4me1 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6298 Pcnt=100) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me1 donorID=57 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6298 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6314 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9986 IROC_Pcnt=100 POISSON_SCORE=0.7148 POISSON_Pcnt=100 GSM=GSM670024 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58.bigWig shortLabel CfBMDMSC H3K4me1 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5252 Pcnt=79) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me1 donorID=58 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5252 HOTSPOT_Pcnt=79 FINDPEAKS_SCORE=0.4904 FINDPEAKS_Pcnt=79 IROC_SCORE=0.9963 IROC_Pcnt=79 POISSON_SCORE=0.6278 POISSON_Pcnt=79 GSM=GSM669909 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59.bigWig shortLabel CfBMDMSC H3K4me1 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6161 Pcnt=96) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me1 donorID=59 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6161 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.6159 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9983 IROC_Pcnt=93 POISSON_SCORE=0.7046 POISSON_Pcnt=96 GSM=GSM670000 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60.bigWig shortLabel CfBMDMSC H3K4me1 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5556 Pcnt=86) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me1 donorID=60 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5556 HOTSPOT_Pcnt=86 FINDPEAKS_SCORE=0.5446 FINDPEAKS_Pcnt=86 IROC_SCORE=0.9974 IROC_Pcnt=89 POISSON_SCORE=0.6642 POISSON_Pcnt=86 GSM=GSM669927 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_57.bigWig shortLabel CfBMDMSC H3K4me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5794 Pcnt=72) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me3 donorID=57 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5794 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.5671 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9927 IROC_Pcnt=20 POISSON_SCORE=0.6093 POISSON_Pcnt=72 GSM=GSM670004 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59.bigWig shortLabel CfBMDMSC H3K4me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6121 Pcnt=84) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me3 donorID=59 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6121 HOTSPOT_Pcnt=84 FINDPEAKS_SCORE=0.6058 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9944 IROC_Pcnt=28 POISSON_SCORE=0.6309 POISSON_Pcnt=80 GSM=GSM670034 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60.bigWig shortLabel CfBMDMSC H3K4me3 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6988 Pcnt=96) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K4me3 donorID=60 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6988 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.694 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9935 IROC_Pcnt=24 POISSON_SCORE=0.7011 POISSON_Pcnt=96 GSM=GSM669990 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_57.bigWig shortLabel CfBMDMSC H3K9ac 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4024 Pcnt=88) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K9ac donorID=57 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4024 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.3625 FINDPEAKS_Pcnt=84 IROC_SCORE=0.9899 IROC_Pcnt=32 POISSON_SCORE=0.4566 POISSON_Pcnt=92 GSM=GSM669917 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59.bigWig shortLabel CfBMDMSC H3K9ac 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3063 Pcnt=72) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K9ac donorID=59 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3063 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.2527 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9944 IROC_Pcnt=60 POISSON_SCORE=0.3743 POISSON_Pcnt=76 GSM=GSM670030 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_57 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_57.bigWig shortLabel CfBMDMSC H3K9me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1124 Pcnt=42) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K9me3 donorID=57 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1124 HOTSPOT_Pcnt=42 FINDPEAKS_SCORE=0.0433 FINDPEAKS_Pcnt=46 IROC_SCORE=0.6884 IROC_Pcnt=4 POISSON_SCORE=0.306 POISSON_Pcnt=50 GSM=GSM670040 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58.bigWig shortLabel CfBMDMSC H3K9me3 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1024 Pcnt=38) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K9me3 donorID=57 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1024 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.0408 FINDPEAKS_Pcnt=42 IROC_SCORE=0.7108 IROC_Pcnt=8 POISSON_SCORE=0.282 POISSON_Pcnt=38 GSM=GSM669919 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59.bigWig shortLabel CfBMDMSC H3K9me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1132 Pcnt=46) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=H3K9me3 donorID=59 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1132 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.0457 FINDPEAKS_Pcnt=50 IROC_SCORE=0.7126 IROC_Pcnt=12 POISSON_SCORE=0.3397 POISSON_Pcnt=65 GSM=GSM670023 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_58 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_58.bigWig shortLabel CfBMDMSC Input 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0151 Pcnt=60) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=Input donorID=58 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0151 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=60 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.059 POISSON_Pcnt=57 GSM=GSM670029 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_59 bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_59.bigWig shortLabel CfBMDMSC Input 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0129 Pcnt=47) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CfBMDMSCCC assayType=Input donorID=59 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0129 HOTSPOT_Pcnt=47 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0519 POISSON_Pcnt=43 GSM=GSM670044 dateUnrestricted=2011-12-31 track BI_Fetal_Brain_Input_UW_H23284 bigDataUrl BI_Fetal_Brain_Input_UW_H23284.bigWig shortLabel FB Input 84 longLabel Fetal Brain Input Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=3) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FB assayType=Input donorID=UWH23284 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14803" sample_common_name="Fetal Brain" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0 HOTSPOT_Pcnt=3 FINDPEAKS_SCORE=0.0028 FINDPEAKS_Pcnt=3 IROC_SCORE=0.8899 IROC_Pcnt=45 POISSON_SCORE=0.0865 POISSON_Pcnt=80 GSM=GSM669944 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K36me3_UW_H23284 bigDataUrl BI_Fetal_Lung_H3K36me3_UW_H23284.bigWig shortLabel FL H3K36me3 84 longLabel Fetal Lung H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=27) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K36me3 donorID=UWH23284 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14809" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.0876 FINDPEAKS_Pcnt=23 IROC_SCORE=0.9015 IROC_Pcnt=19 POISSON_SCORE=0.4148 POISSON_Pcnt=42 GSM=GSM669912 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K4me1_UW_H23266 bigDataUrl BI_Fetal_Lung_H3K4me1_UW_H23266.bigWig shortLabel FL H3K4me1 66 longLabel Fetal Lung H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4642 Pcnt=71) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K4me1 donorID=UWH23266 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14724" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4642 HOTSPOT_Pcnt=71 FINDPEAKS_SCORE=0.41 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9895 IROC_Pcnt=61 POISSON_SCORE=0.5819 POISSON_Pcnt=68 GSM=GSM669969 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K9me3_UW_H23266 bigDataUrl BI_Fetal_Lung_H3K9me3_UW_H23266.bigWig shortLabel FL H3K9me3 66 longLabel Fetal Lung H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1397 Pcnt=50) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=H3K9me3 donorID=UWH23266 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14751" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1397 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.067 FINDPEAKS_Pcnt=54 IROC_SCORE=0.799 IROC_Pcnt=27 POISSON_SCORE=0.3137 POISSON_Pcnt=54 GSM=GSM669939 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_Input_UW_H23266 bigDataUrl BI_Fetal_Lung_Input_UW_H23266.bigWig shortLabel FL Input 66 longLabel Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=30) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=Input donorID=UWH23266 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14751" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.007 FINDPEAKS_Pcnt=67 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0309 POISSON_Pcnt=30 GSM=GSM669956 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_Input_UW_H23284 bigDataUrl BI_Fetal_Lung_Input_UW_H23284.bigWig shortLabel FL Input 84 longLabel Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.0054 Pcnt=27) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=FL assayType=Input donorID=UWH23284 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 14809" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0054 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.006 FINDPEAKS_Pcnt=27 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0298 POISSON_Pcnt=27 GSM=GSM669993 dateUnrestricted=2011-12-31 track BI_HUES48_H3K27me3 bigDataUrl BI_HUES48_H3K27me3.bigWig shortLabel HUES48 H3K27me3 e3 longLabel HUES48 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.299 Pcnt=80) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES48 assayType=H3K27me3 donorID=NA type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.299 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.2722 FINDPEAKS_Pcnt=85 IROC_SCORE=0.9981 IROC_Pcnt=100 POISSON_SCORE=0.355 POISSON_Pcnt=55 GSM=GSM669942 dateUnrestricted=2011-12-31 track BI_HUES48_H3K36me3 bigDataUrl BI_HUES48_H3K36me3.bigWig shortLabel HUES48 H3K36me3 e3 longLabel HUES48 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3122 Pcnt=58) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES48 assayType=H3K36me3 donorID=NA type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3122 HOTSPOT_Pcnt=58 FINDPEAKS_SCORE=0.3382 FINDPEAKS_Pcnt=65 IROC_SCORE=0.9913 IROC_Pcnt=69 POISSON_SCORE=0.4971 POISSON_Pcnt=54 GSM=GSM670039 dateUnrestricted=2011-12-31 track BI_HUES48_H3K4me1 bigDataUrl BI_HUES48_H3K4me1.bigWig shortLabel HUES48 H3K4me1 e1 longLabel HUES48 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3364 Pcnt=39) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES48 assayType=H3K4me1 donorID=NA type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3364 HOTSPOT_Pcnt=39 FINDPEAKS_SCORE=0.2547 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9612 IROC_Pcnt=39 POISSON_SCORE=0.4983 POISSON_Pcnt=43 GSM=GSM669954 dateUnrestricted=2011-12-31 track BI_HUES48_H3K4me3 bigDataUrl BI_HUES48_H3K4me3.bigWig shortLabel HUES48 H3K4me3 e3 longLabel HUES48 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6495 Pcnt=88) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES48 assayType=H3K4me3 donorID=NA type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6495 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.654 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9984 IROC_Pcnt=52 POISSON_SCORE=0.6652 POISSON_Pcnt=88 GSM=GSM669936 dateUnrestricted=2011-12-31 track BI_HUES48_H3K9ac bigDataUrl BI_HUES48_H3K9ac.bigWig shortLabel HUES48 H3K9ac Ac longLabel HUES48 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.181 Pcnt=24) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES48 assayType=H3K9ac donorID=NA type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.181 HOTSPOT_Pcnt=24 FINDPEAKS_SCORE=0.1216 FINDPEAKS_Pcnt=24 IROC_SCORE=0.998 IROC_Pcnt=92 POISSON_SCORE=0.2059 POISSON_Pcnt=12 GSM=GSM670013 dateUnrestricted=2011-12-31 track BI_HUES64_H3K27me3 bigDataUrl BI_HUES64_H3K27me3.bigWig shortLabel HUES64 H3K27me3 e3 longLabel HUES64 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.4804 Pcnt=100) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K27me3 donorID=NA type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4804 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.4448 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9883 IROC_Pcnt=95 POISSON_SCORE=0.5114 POISSON_Pcnt=100 GSM=GSM669974 dateUnrestricted=2011-12-31 track BI_HUES64_H3K36me3 bigDataUrl BI_HUES64_H3K36me3.bigWig shortLabel HUES64 H3K36me3 e3 longLabel HUES64 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3406 Pcnt=73) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K36me3 donorID=NA type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3406 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.3832 FINDPEAKS_Pcnt=77 IROC_SCORE=0.9952 IROC_Pcnt=88 POISSON_SCORE=0.5288 POISSON_Pcnt=77 GSM=GSM669932 dateUnrestricted=2011-12-31 track BI_HUES64_H3K4me1 bigDataUrl BI_HUES64_H3K4me1.bigWig shortLabel HUES64 H3K4me1 e1 longLabel HUES64 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3525 Pcnt=43) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K4me1 donorID=NA type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3525 HOTSPOT_Pcnt=43 FINDPEAKS_SCORE=0.2689 FINDPEAKS_Pcnt=39 IROC_SCORE=0.9604 IROC_Pcnt=36 POISSON_SCORE=0.5135 POISSON_Pcnt=50 GSM=GSM669966 dateUnrestricted=2011-12-31 track BI_HUES64_H3K4me3 bigDataUrl BI_HUES64_H3K4me3.bigWig shortLabel HUES64 H3K4me3 e3 longLabel HUES64 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6513 Pcnt=92) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K4me3 donorID=NA type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6513 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.6568 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9983 IROC_Pcnt=44 POISSON_SCORE=0.6758 POISSON_Pcnt=92 GSM=GSM669967 dateUnrestricted=2011-12-31 track BI_HUES64_H3K9ac bigDataUrl BI_HUES64_H3K9ac.bigWig shortLabel HUES64 H3K9ac Ac longLabel HUES64 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2265 Pcnt=52) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K9ac donorID=NA type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2265 HOTSPOT_Pcnt=52 FINDPEAKS_SCORE=0.1559 FINDPEAKS_Pcnt=48 IROC_SCORE=0.9947 IROC_Pcnt=64 POISSON_SCORE=0.2795 POISSON_Pcnt=32 GSM=GSM669963 dateUnrestricted=2011-12-31 track BI_HUES64_H3K9me3 bigDataUrl BI_HUES64_H3K9me3.bigWig shortLabel HUES64 H3K9me3 e3 longLabel HUES64 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.241 Pcnt=92) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES64 assayType=H3K9me3 donorID=NA type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.241 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.2897 FINDPEAKS_Pcnt=96 IROC_SCORE=0.969 IROC_Pcnt=100 POISSON_SCORE=0.4338 POISSON_Pcnt=96 GSM=GSM669928 dateUnrestricted=2011-12-31 track BI_HUES6_H3K27me3_04 bigDataUrl BI_HUES6_H3K27me3_04.bigWig shortLabel HUES6 H3K27me3 longLabel HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3435 Pcnt=90) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K27me3 donorID=NA type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3435 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.3046 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9646 IROC_Pcnt=85 POISSON_SCORE=0.451 POISSON_Pcnt=75 GSM=GSM669887 dateUnrestricted=2011-12-31 track BI_HUES6_H3K27me3_11 bigDataUrl BI_HUES6_H3K27me3_11.bigWig shortLabel HUES6 H3K27me3 longLabel HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3981 Pcnt=95) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K27me3 donorID=NA type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3981 HOTSPOT_Pcnt=95 FINDPEAKS_SCORE=0.3693 FINDPEAKS_Pcnt=95 IROC_SCORE=0.9772 IROC_Pcnt=90 POISSON_SCORE=0.5 POISSON_Pcnt=90 GSM=GSM669897 dateUnrestricted=2011-12-31 track BI_HUES6_H3K36me3_03 bigDataUrl BI_HUES6_H3K36me3_03.bigWig shortLabel HUES6 H3K36me3 longLabel HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3505 Pcnt=81) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K36me3 donorID=NA type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3505 HOTSPOT_Pcnt=81 FINDPEAKS_SCORE=0.3749 FINDPEAKS_Pcnt=73 IROC_SCORE=0.9936 IROC_Pcnt=81 POISSON_SCORE=0.5284 POISSON_Pcnt=73 GSM=GSM669898 dateUnrestricted=2011-12-31 track BI_HUES6_H3K36me3_10 bigDataUrl BI_HUES6_H3K36me3_10.bigWig shortLabel HUES6 H3K36me3 longLabel HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3184 Pcnt=62) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K36me3 donorID=NA type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3184 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.3411 FINDPEAKS_Pcnt=69 IROC_SCORE=0.9897 IROC_Pcnt=58 POISSON_SCORE=0.5132 POISSON_Pcnt=69 GSM=GSM669892 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me1_01 bigDataUrl BI_HUES6_H3K4me1_01.bigWig shortLabel HUES6 H3K4me1 longLabel HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3758 Pcnt=46) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K4me1 donorID=NA type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3758 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.3014 FINDPEAKS_Pcnt=50 IROC_SCORE=0.9729 IROC_Pcnt=46 POISSON_SCORE=0.534 POISSON_Pcnt=57 GSM=GSM669885 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me1_08 bigDataUrl BI_HUES6_H3K4me1_08.bigWig shortLabel HUES6 H3K4me1 longLabel HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4317 Pcnt=61) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K4me1 donorID=NA type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.4317 HOTSPOT_Pcnt=61 FINDPEAKS_SCORE=0.36 FINDPEAKS_Pcnt=57 IROC_SCORE=0.9817 IROC_Pcnt=57 POISSON_SCORE=0.5852 POISSON_Pcnt=71 GSM=GSM669891 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me3_02 bigDataUrl BI_HUES6_H3K4me3_02.bigWig shortLabel HUES6 H3K4me3 longLabel HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.611 Pcnt=80) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K4me3 donorID=NA type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.611 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.6124 FINDPEAKS_Pcnt=84 IROC_SCORE=0.9982 IROC_Pcnt=40 POISSON_SCORE=0.631 POISSON_Pcnt=84 GSM=GSM669889 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me3_09 bigDataUrl BI_HUES6_H3K4me3_09.bigWig shortLabel HUES6 H3K4me3 longLabel HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5944 Pcnt=76) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K4me3 donorID=NA type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.5944 HOTSPOT_Pcnt=76 FINDPEAKS_SCORE=0.59 FINDPEAKS_Pcnt=76 IROC_SCORE=0.9987 IROC_Pcnt=56 POISSON_SCORE=0.6174 POISSON_Pcnt=76 donorID=GSM669893 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9ac_12 bigDataUrl BI_HUES6_H3K9ac_12.bigWig shortLabel HUES6 H3K9ac longLabel HUES6 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4163 Pcnt=92) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K9ac donorID=NA type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.4163 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.361 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9924 IROC_Pcnt=48 POISSON_SCORE=0.4477 POISSON_Pcnt=88 GSM=GSM669890 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9me3_06 bigDataUrl BI_HUES6_H3K9me3_06.bigWig shortLabel HUES6 H3K9me3 longLabel HUES6 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.3148 Pcnt=100) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K9me3 donorID=NA type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3148 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.3213 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9673 IROC_Pcnt=96 POISSON_SCORE=0.4871 POISSON_Pcnt=100 GSM=GSM669886 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9me3_13 bigDataUrl BI_HUES6_H3K9me3_13.bigWig shortLabel HUES6 H3K9me3 longLabel HUES6 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.2368 Pcnt=88) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=H3K9me3 donorID=NA type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.2368 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.1628 FINDPEAKS_Pcnt=81 IROC_SCORE=0.912 IROC_Pcnt=81 POISSON_SCORE=0.4292 POISSON_Pcnt=92 GSM=GSM669894 dateUnrestricted=2011-12-31 track BI_HUES6_Input_07 bigDataUrl BI_HUES6_Input_07.bigWig shortLabel HUES6 Input longLabel HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0197 Pcnt=70) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=Input donorID=NA type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.0197 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=13 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0507 POISSON_Pcnt=40 GSM=GSM669888 dateUnrestricted=2011-12-31 track BI_HUES6_Input_14 bigDataUrl BI_HUES6_Input_14.bigWig shortLabel HUES6 Input longLabel HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0299 Pcnt=83) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=HUES6 assayType=Input donorID=NA type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.0299 HOTSPOT_Pcnt=83 FINDPEAKS_SCORE=0.0053 FINDPEAKS_Pcnt=7 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0756 POISSON_Pcnt=77 GSM=GSM669895 dateUnrestricted=2011-12-31 track BI_Rectal_Mucosa_H3K4me1_30 bigDataUrl BI_Rectal_Mucosa_H3K4me1_30.bigWig shortLabel RM H3K4me1 30 longLabel Rectal Smooth Mucosa H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2008 Pcnt=11) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=RSM assayType=H3K4me1 donorID=30 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=39 sample_common_name="Rectal Smooth Muscle" collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2008 HOTSPOT_Pcnt=11 FINDPEAKS_SCORE=0.1086 FINDPEAKS_Pcnt=18 IROC_SCORE=0.935 IROC_Pcnt=29 POISSON_SCORE=0.3341 POISSON_Pcnt=7 GSM=GSM669964 dateUnrestricted=2011-12-31 track BI_Rectal_Mucosa_H3K9ac_31 bigDataUrl BI_Rectal_Mucosa_H3K9ac_31.bigWig shortLabel RM H3K9ac 31 longLabel Rectal Mucosa H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3374 Pcnt=76) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=RM assayType=H3K9ac donorID=31 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=40 sample_common_name="Rectal Mucosa" collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3374 HOTSPOT_Pcnt=76 FINDPEAKS_SCORE=0.2896 FINDPEAKS_Pcnt=76 IROC_SCORE=0.9975 IROC_Pcnt=88 POISSON_SCORE=0.3741 POISSON_Pcnt=72 GSM=GSM669949 dateUnrestricted=2011-12-31 track BI_Skeletal_Muscle_Input_63 bigDataUrl BI_Skeletal_Muscle_Input_63.bigWig shortLabel SM Input 63 longLabel Skeletal Muscle Input Signal from REMC/Broad (Hotspot_Score=0.027 Pcnt=77) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=SM assayType=Input donorID=63 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=85 sample_common_name="Skeletal Muscle" collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.027 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.0082 FINDPEAKS_Pcnt=87 IROC_SCORE=0.9805 IROC_Pcnt=55 POISSON_SCORE=0.093 POISSON_Pcnt=83 GSM=GSM669948 dateUnrestricted=2011-12-31 track BI_Stomach_Smooth_Muscle_H3K9ac_28 bigDataUrl BI_Stomach_Smooth_Muscle_H3K9ac_28.bigWig shortLabel SSM H3K9ac 28 longLabel Stomach Smooth Muscle H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1402 Pcnt=12) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=SSM assayType=H3K9ac donorID=28 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=37 sample_common_name="Stomach Smooth Muscle" collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1402 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.1022 FINDPEAKS_Pcnt=12 IROC_SCORE=0.9959 IROC_Pcnt=76 POISSON_SCORE=0.204 POISSON_Pcnt=8 GSM=GSM669921 dateUnrestricted=2011-12-31 track BI_ESWA7_H3K9ac bigDataUrl BI_ESWA7_H3K9ac.bigWig shortLabel ESWA7 H3K9ac longLabel ES-WA7 H3K9ac Lib MC 20100818 06--ChIP MC 20100816 Signal from REMC/Broad subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=ESWA7 assayType=H3K9ac donorID=NA type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample alias=58 sample common name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=WA07-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM669896 dateUnrestricted=2011-12-31 track BI_ESWA7_Input bigDataUrl BI_ESWA7_Input.bigWig shortLabel ESWA7 Input CE longLabel Input Lib MC 20100211 05--ChIP MC 20100208 Signal from REMC/Broad_ES-WA7 subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=ESWA7 assayType=Input donorID=NA type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=57 sample_common_name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=WA07-1 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM669926 dateUnrestricted=2011-12-31 track BI_Mobilized_CD34_Primary_Cells_H3K27me3 bigDataUrl BI_Mobilized_CD34_Primary_Cells_H3K27me3.bigWig shortLabel MCD34 H3K27me3 80 longLabel Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1454 Pcnt=45) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=UWRO01480 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 12771" sample_common_name="Mobilized CD34 Primary Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Upstate chip_antibody_lot=dam151401 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1454 HOTSPOT_Pcnt=45 FINDPEAKS_SCORE=0.0752 FINDPEAKS_Pcnt=55 IROC_SCORE=0.9259 IROC_Pcnt=70 POISSON_SCORE=0.2635 POISSON_Pcnt=30 GSM=GSM669945 dateUnrestricted=2011-12-31 track BI_CD34_Primary_Cells_Input_UW_RO_01492 bigDataUrl BI_CD34_Primary_Cells_Input_UW_RO_01492.bigWig shortLabel CD34 Input 92 longLabel CD34 Primary Cells Input UW RO Signal from REMC/Broad (Hotspot_Score=0.0497 Pcnt=87) subTrack EARelease3BIHistoneViewCOV subGroups view=COV sampleType=CD34 assayType=Input donorID=UWRO01492 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="UW DS # 12774" sample_common_name="Mobilized CD34 Primary Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Male biomaterial_type="Primary Cell" donor_id="UW RO 01492" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0497 HOTSPOT_Pcnt=87 FINDPEAKS_SCORE=0.0083 FINDPEAKS_Pcnt=90 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.1196 POISSON_Pcnt=90 GSM=GSM669961 dateUnrestricted=2011-12-31 track EARelease3Methylation compositeTrack on shortLabel DNA Methylation longLabel DNA Methylation by REMC group edacc3 subGroup1 view Views ALN=Alignments COV1=MeDIP_Coverage COV2=MRE_Coverage COV3=RRBS_Coverage COV4=BS_Coverage subGroup2 sampleType Sample_Type AK=Adult_Kidney ESWA7=ES-WA7 H1DEBCC=H1_Derived_Embryoid_Body_Cultured_Cells H9DEBCC=H9_Derived_Embryoid_Body_Cultured_Cells H9DNPCC=H9_Derived_Neuronal_Progenitor_Cultured_Cells H9=H9 HUES13=HUES13 HUES1DEBCC=HUES1_Derived_Embryoid_Body_Cultured_Cells HUES3DEBCC=HUES3_Derived_Embryoid_Body_Cultured_Cells HUES44=HUES44 HUES45DEBCC=HUES45_Derived_Embryoid_Body_Cultured_Cells HUES45=HUES45 HUES66=HUES66 HUES6DEBCC=HUES6_Derived_Embryoid_Body_Cultured_Cells iPS11c=iPS-11c iPS17b=iPS-17b iPS20b=iPS-20b iPS27b=iPS-27b iPS27e=iPS-27e PF=Primary_Fibroblast H1DNP=H1_Derived_Neuronal_Progenitor_Cultured_Cells H1DNPr1a=H1_Derived_Neuronal_Progenitor_Cultured_Cells_r1a H1DNPr1b=H1_Derived_Neuronal_Progenitor_Cultured_Cells_r1b H1DNPr1c=H1_Derived_Neuronal_Progenitor_Cultured_Cells_r1c H1DNPr2a=H1_Derived_Neuronal_Progenitor_Cultured_Cells_r2a H1DNPr2b=H1_Derived_Neuronal_Progenitor_Cultured_Cells_r2b BH=Breast_vHMEC BLEC=Breast_Luminal_Epithelial_Cells BMC=Breast_Myoepithelial_Cells BSC=Breast_Stem_Cells CD4M=CD4_Memory CD4N=CD4_Naive CD8N=CD8_Naive FB=Fetal_Brain NCCCD=Neurosphere_Cultured_Cells_Cortex_Derived NCCGED=Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived PBMPC=Peripheral_Blood_Mononuclear_Primary_Cells PFKPC=Penis_Foreskin_Keratinocyte_Primary_Cells subGroup3 assayType Assay_Type RRBS=RRBS BS=Bisulfite-Seq MeDIP=MeDIP-Seq MRE=MRE-Seq subGroup4 donorID Donor/Library 27=27 DonorofH1cells=DonorofH1cells DonorofH9cells=DonorofH9cells HuFNSC01=HuFNSC01 HuFNSC02=HuFNSC02 methylC-seq_h1-npc_r2b=methylC-seq_h1-npc_r2b RRBS423=RRBS423 RRBS511=RRBS511 RRBS529=RRBS529 RRBS531=RRBS531 RRBS544=RRBS544 RRBS546=RRBS546 RRBS577=RRBS577 RRBS579=RRBS579 RRBS593=RRBS593 RRBS595=RRBS595 RRBS748=RRBS748 RRBS749=RRBS749 RRBS752=RRBS752 RRBS753=RRBS753 RRBS756=RRBS756 RRBS780=RRBS780 RRBS782=RRBS782 RRBS784=RRBS784 RRBS788=RRBS788 RRBS797=RRBS797 RRBS799=RRBS799 RRBS832=RRBS832 RRBS941=RRBS941 RRBS957=RRBS957 TC009=TC009 methylC-seq_h1-npc_r1a=methylC-seq_h1-npc_r1a methylC-seq_h1-npc_r1c=methylC-seq_h1-npc_r1c methylC-seq_h1-npc_r2a=methylC-seq_h1-npc_r2a methylC-seq_h1-npc_r1b=methylC-seq_h1-npc_r1b methylC-seq_h1-npc_r2b=methylC-seq_h1-npc_r2b sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 6 visibility full type bed 3 track EARelease3MethylationViewCOV3 #bigDataUrl EARelease3MethylationViewCOV3.bigWig shortLabel RRBS Coverage view COV3 maxHeightPixels 64:32:16 subTrack EARelease3Methylation track BI_Adult_Kidney_RRBS_27 bigDataUrl BI_Adult_Kidney_RRBS_27.bigWig shortLabel AK RRBS 27 longLabel Adult Kidney DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=AK assayType=RRBS donorID=27 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=36 sample_common_name="Adult Kidney" collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=150-420 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-300 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.53 GSM=GSM670086 dateUnrestricted=2011-12-31 track BI_ESWA7_RRBS_RRBS528_529 bigDataUrl BI_ESWA7_RRBS_RRBS528_529.bigWig shortLabel ESWA7 RRBS 28 longLabel ES-WA7 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=ESWA7 assayType=RRBS donorID=RRBS529 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=WA-7 sample_common_name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.80 GSM=GSM669902 dateUnrestricted=2011-12-31 track BI_H1_Derived_Embryoid_Body_RRBS_RRBS792_793 bigDataUrl BI_H1_Derived_Embryoid_Body_RRBS_RRBS792_793.bigWig shortLabel H1DEB RRBS 92 longLabel H1 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=H1DEBCC assayType=RRBS donorID=DonorofH1cells type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hEB16d_H1_p38 sample_common_name="H1 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=38 cell_type="H1p38 EB_d16" donor_ethnicity=unknown donor_sex=Male biomaterial_type="Primary Cell Culture" donor_id="Donor of H1 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.83 GSM=GSM670052 dateUnrestricted=2011-12-31 track BI_H9_Derived_Embryoid_Body_RRBS794_795 bigDataUrl BI_H9_Derived_Embryoid_Body_RRBS794_795.bigWig shortLabel H9DEB RRBS 94 longLabel H9 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=H9DEBCC assayType=RRBS donorID=DonorofH9cells type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="H9p65 EB_d16" sample_common_name="H9 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=65 cell_type="H9p65 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of H9 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.14 GSM=GSM670054 dateUnrestricted=2011-12-31 track BI_H9_Derived_Neuronal_Progenitor_RRBS956_957 bigDataUrl BI_H9_Derived_Neuronal_Progenitor_RRBS956_957.bigWig shortLabel HDNP RRBS 56 longLabel H9 Derived Neuronal Progenitor Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=H9DNPCC assayType=RRBS donorID=RRBS957 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neural progenitors derived from ES H9 cell" sample_common_name="H9 Derived Neuronal Progenitor Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=">90% nestin(+) and <5% Oct-4(+)" culture_conditions=Medium passage_if_expanded=NA cell_type="Neural progenitors derived from ES H9 cell" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of H9 cells" biomaterial_provider="ArunA Biomedical, Athens, GA" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-370 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.79 GSM=GSM669900 dateUnrestricted=2011-12-31 track BI_H9_RRBS_RRBS747_748 bigDataUrl BI_H9_RRBS_RRBS747_748.bigWig shortLabel H9 RRBS 47 longLabel H9 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=H9 assayType=RRBS donorID=RRBS748 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hES_H9_p58 sample_common_name="H9 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=58 line=H9 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.9 GSM=GSM669903 dateUnrestricted=2011-12-31 track BI_HUES13_RRBS_RRBS749_750 bigDataUrl BI_HUES13_RRBS_RRBS749_750.bigWig shortLabel HUES13 RRBS 49 longLabel HUES13 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES13 assayType=RRBS donorID=RRBS749 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hES_HUES13_p47 sample_common_name="HUES13 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=47 line=HUES13 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-130 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.23 GSM=GSM670087 dateUnrestricted=2011-12-31 track BI_HUES1_Derived_Embryoid_Body_RRBS780_781 bigDataUrl BI_HUES1_Derived_Embryoid_Body_RRBS780_781.bigWig shortLabel HU1DEB RRBS 80 longLabel HUES1 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES1DEBCC assayType=RRBS donorID=RRBS780 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hEB16d_HUES1_p29 sample_common_name="HUES1 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=29 cell_type="HUES_1p29 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES1 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.47 GSM=GSM670078 dateUnrestricted=2011-12-31 track BI_HUES3_Derived_Embryoid_Body_RRBS782_783 bigDataUrl BI_HUES3_Derived_Embryoid_Body_RRBS782_783.bigWig shortLabel HU3DEB RRBS 82 longLabel HUES3 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES3DEBCC assayType=RRBS donorID=RRBS782 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hEB16d_HUES3_p22 sample_common_name="HUES3 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=22 cell_type="HUES_3p22 EB_d16" donor_ethnicity=unknown donor_sex=Male biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES3 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.39 GSM=GSM670076 dateUnrestricted=2011-12-31 track BI_HUES44_RRBS_RRBS544_545 bigDataUrl BI_HUES44_RRBS_RRBS544_545.bigWig shortLabel HUES44 RRBS 44 longLabel HUES44 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES44 assayType=RRBS donorID=RRBS544 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hES_HUES44_p18 sample_common_name="HUES44 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=18 line=HUES44 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.79 GSM=GSM670089 dateUnrestricted=2011-12-31 track BI_HUES45_Derived_Embryoid_Body_RRBS788_789 bigDataUrl BI_HUES45_Derived_Embryoid_Body_RRBS788_789.bigWig shortLabel HU45DEB RRBS 88 longLabel HUES45 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES45DEBCC assayType=RRBS donorID=RRBS788 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hEB16d_HUES45_p21 sample_common_name="HUES45 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=21 cell_type="HUES_45p21 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES45 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.33 GSM=GSM670084 dateUnrestricted=2011-12-31 track BI_HUES45_RRBS_RRBS546_547 bigDataUrl BI_HUES45_RRBS_RRBS546_547.bigWig shortLabel HUES45 RRBS 46 longLabel HUES45 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES45 assayType=RRBS donorID=RRBS546 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hES_HUES45_p20 sample_common_name="HUES45 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=20 line=HUES45 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.92 GSM=GSM670091 dateUnrestricted=2011-12-31 track BI_HUES66_RRBS_RRBS941 bigDataUrl BI_HUES66_RRBS_RRBS941.bigWig shortLabel HUES66 RRBS 41 longLabel HUES66 DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES66 assayType=RRBS donorID=RRBS941 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hES_HUES66_p20 sample_common_name="HUES66 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p20 line=HUES66 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=240-360 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=120-240 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.35 GSM=GSM670049 dateUnrestricted=2011-12-31 track BI_HUES6_Derived_Embryoid_Body_RRBS784_785 bigDataUrl BI_HUES6_Derived_Embryoid_Body_RRBS784_785.bigWig shortLabel HU6DEB RRBS 84 longLabel HUES6 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=HUES6DEBCC assayType=RRBS donorID=RRBS784 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hEB16d_HUES6_p30 sample_common_name="HUES6 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=30 cell_type="HUES_6p30 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES6 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.51 GSM=GSM670080 dateUnrestricted=2011-12-31 track BI_iPS11c_RRBS_RRBS832_833 bigDataUrl BI_iPS11c_RRBS_RRBS832_833.bigWig shortLabel iPS11c RRBS 32 longLabel iPS-11c DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS11c assayType=RRBS donorID=RRBS832 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hiPS_11c_p23 sample_common_name="iPS-11c Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=23 line="hESC 11c p23" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.0 GSM=GSM670074 dateUnrestricted=2011-12-31 track BI_iPS17b_RRBS_RRBS751_752 bigDataUrl BI_iPS17b_RRBS_RRBS751_752.bigWig shortLabel iPS17b RRBS 51 longLabel iPS-17b DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS17b assayType=RRBS donorID=RRBS752 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hiPS_17b_p32 sample_common_name="iPS-17b Cell Line" lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.24 GSM=GSM670067 dateUnrestricted=2011-12-31 track BI_iPS17b_RRBS_RRBS753_754 bigDataUrl BI_iPS17b_RRBS_RRBS753_754.bigWig shortLabel iPS17b RRBS 53 longLabel iPS-17b DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS17b assayType=RRBS donorID=RRBS753 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hiPS_17b_p32 sample_common_name="iPS-17b Cell Line" lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-130 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.93 GSM=GSM670068 dateUnrestricted=2011-12-31 track BI_iPS20b_RRBS_RRBS796_797 bigDataUrl BI_iPS20b_RRBS_RRBS796_797.bigWig shortLabel iPS20b RRBS 96 longLabel iPS-20b DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS20b assayType=RRBS donorID=RRBS797 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="hiPS_20b p49 KOSR iPS" sample_common_name="iPS-20b Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=49 line="hiPS_20b p49 KOSR iPS" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.12 GSM=GSM670056 dateUnrestricted=2011-12-31 track BI_iPS20b_RRBS_RRBS798_799 bigDataUrl BI_iPS20b_RRBS_RRBS798_799.bigWig shortLabel iPS20b RRBS 98 longLabel iPS-20b DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS20b assayType=RRBS donorID=RRBS799 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="hiPS_20b p49 TeSR iPS" sample_common_name="iPS-20b Cell Line" lineage="induced pluripotent cells" medium=TeSR molecule="genomic DNA" disease=none passage=49 line="hiPS_20b p49 TeSR iPS" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.47 GSM=GSM670058 dateUnrestricted=2011-12-31 track BI_iPS27b_RRBS_RRBS593_594 bigDataUrl BI_iPS27b_RRBS_RRBS593_594.bigWig shortLabel iPS27b RRBS 93 longLabel iPS-27b DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS27b assayType=RRBS donorID=RRBS593 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hiPS_27b_p31 sample_common_name="iPS-27b Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=31 line=hiPS-27b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=120-240 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-150 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.07 GSM=GSM670072 dateUnrestricted=2011-12-31 track BI_iPS27e_RRBS_RRBS755_756 bigDataUrl BI_iPS27e_RRBS_RRBS755_756.bigWig shortLabel iPS27e RRBS 55 longLabel iPS-27e DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=iPS27e assayType=RRBS donorID=RRBS756 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hiPS_27e_p32 sample_common_name="iPS-27e Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=32 line=hiPS27 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.02 GSM=GSM670064 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS422423 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS422423.bigWig shortLabel PF RRBS 22 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS423 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_18_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line="19 Fib" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.51 GSM=GSM670082 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS510511 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS510511.bigWig shortLabel PF RRBS 10 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS511 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_20_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line="Fib 20" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.38 GSM=GSM670085 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS530531 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS530531.bigWig shortLabel PF RRBS 30 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS531 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_15_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib15 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.16 GSM=GSM670061 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS576577 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS576577.bigWig shortLabel PF RRBS 76 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS577 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_11_p8 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=8 line=Fib11 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.39 GSM=GSM670048 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS578579 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS578579.bigWig shortLabel PF RRBS 78 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS579 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_17_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib17 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.83 GSM=GSM670059 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS595596 bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS595596.bigWig shortLabel PF RRBS 95 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad subTrack EARelease3MethylationViewCOV3 subGroups view=COV3 sampleType=PF assayType=RRBS donorID=RRBS595 type bigWig 0 90000 noInherit on color 200,0,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=hFib_27_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib27 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=120-240 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-150 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.64 GSM=GSM670071 dateUnrestricted=2011-12-31 track EARelease3MethylationViewCOV4 shortLabel BS Coverage view COV4 maxHeightPixels 64:32:16 subTrack EARelease3Methylation visibility full track UCSD_H1_Derived_Neuronal_Progenitor_BS_combined bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_combined.bigWig shortLabel HDNP BS combined longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNP assayType=BS donorID=methylC-seq_h1-npc_r2b type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-NPC_r2 sample_common_name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.94 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE=80 GSM=GSM675546 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1a bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1a.bigWig shortLabel HDNP BS r1a longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNPr1a assayType=BS donorID=methylC-seq_h1-npc_r1a type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675542 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1b bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1b.bigWig shortLabel HDNP BS r1b longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNPr1b assayType=BS donorID=methylC-seq_h1-npc_r1b type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675543 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1c bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1c.bigWig shortLabel HDNP BS r1c longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNPr1c assayType=BS donorID=methylC-seq_h1-npc_r1c type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675544 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r2a bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r2a.bigWig shortLabel HDNP BS r2a longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNPr2a assayType=BS donorID=methylC-seq_h1-npc_r2a type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample alias=H1-NPC_r2 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675545 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r2b bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r2b.bigWig shortLabel HDNP BS r2b longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD subTrack EARelease3MethylationViewCOV4 subGroups view=COV4 sampleType=H1DNPr2b assayType=BS donorID=methylC-seq_h1-npc_r2b type bigWig 0 90000 noInherit on color 0,0,133 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample alias=H1-NPC_r2 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675546 dateUnrestricted=2011-11-16 track EARelease3MethylationViewCOV1 #bigDataUrl EARelease3MethylationViewCOV1.bigWig shortLabel MeDIP Coverage view COV1 visibility hide maxHeightPixels 64:32:16 subTrack EARelease3Methylation track UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009 bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4M MeDIP 09 longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2001 Pcnt=30 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=CD4M assayType=MeDIP donorID=TC009 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2001 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.0278 FINDPEAKS_Pcnt=30 IROC_SCORE=0.8122 IROC_Pcnt=30 POISSON_SCORE=0.3638 POISSON_Pcnt=30 GSM=GSM669608 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MeDIP_HuFNSC01 bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC01.bigWig shortLabel NGED MeDIP 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2684 Pcnt=60 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=NCCGED assayType=MeDIP donorID=HuFNSC01 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2684 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.1089 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9012 IROC_Pcnt=60 POISSON_SCORE=0.4185 POISSON_Pcnt=60 GSM=GSM669611 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MeDIP_HuFNSC02 bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC02.bigWig shortLabel NGED MeDIP 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3672 Pcnt=80 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=NCCGED assayType=MeDIP donorID=HuFNSC02 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3672 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.2364 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9484 IROC_Pcnt=80 POISSON_SCORE=0.4795 POISSON_Pcnt=80 GSM=GSM669613 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MeDIP_HuFNSC01 bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC01.bigWig shortLabel NCD MeDIP 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2301 Pcnt=40 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=NCCCD assayType=MeDIP donorID=HuFNSC01 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2301 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0706 FINDPEAKS_Pcnt=40 IROC_SCORE=0.8839 IROC_Pcnt=50 POISSON_SCORE=0.403 POISSON_Pcnt=50 GSM=GSM669610 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MeDIP_HuFNSC02 bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC02.bigWig shortLabel NCD MeDIP 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3754 Pcnt=90 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=NCCCD assayType=MeDIP donorID=HuFNSC02 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3754 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.2585 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9538 IROC_Pcnt=90 POISSON_SCORE=0.4854 POISSON_Pcnt=90 GSM=GSM669612 dateUnrestricted=2011-12-31 track UCSFUBC_PBMPC_MeDIP_TC009 bigDataUrl UCSFUBC_PBMPC_MeDIP_TC009.bigWig shortLabel PBM MeDIP 09 longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2531 Pcnt=50 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=PBMPC assayType=MeDIP donorID=TC009 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="PBMC TC009" sample_common_name="Peripheral Blood Mononuclear Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2531 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0748 FINDPEAKS_Pcnt=50 IROC_SCORE=0.867 IROC_Pcnt=40 POISSON_SCORE=0.3941 POISSON_Pcnt=40 GSM=GSM669606 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009 bigDataUrl UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4N MeDIP 09 longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1658 Pcnt=20 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=CD4N assayType=MeDIP donorID=TC009 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD4 Naive TC009" sample_common_name="CD4 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1658 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0173 FINDPEAKS_Pcnt=20 IROC_SCORE=0.7651 IROC_Pcnt=20 POISSON_SCORE=0.3315 POISSON_Pcnt=20 GSM=GSM669607 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009 bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD8N MeDIP 09 longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1546 Pcnt=10 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=CD8N assayType=MeDIP donorID=TC009 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD8 Naive TC009" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1546 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0168 FINDPEAKS_Pcnt=10 IROC_SCORE=0.7574 IROC_Pcnt=10 POISSON_SCORE=0.324 POISSON_Pcnt=10 GSM=GSM669609 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01 bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01.bigWig shortLabel FB MeDIP 01 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3262 Pcnt=70 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=FB assayType=MeDIP donorID=HuFNSC01 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3262 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.1753 FINDPEAKS_Pcnt=70 IROC_SCORE=0.9291 IROC_Pcnt=70 POISSON_SCORE=0.4466 POISSON_Pcnt=70 GSM=GSM669614 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02 bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02.bigWig shortLabel FB MeDIP 02 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4244 Pcnt=100 ) subTrack EARelease3MethylationViewCOV1 subGroups view=COV1 sampleType=FB assayType=MeDIP donorID=HuFNSC02 type bigWig 0 30 noInherit on color 100,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.4244 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.3569 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9634 IROC_Pcnt=100 POISSON_SCORE=0.5016 POISSON_Pcnt=100 GSM=GSM669615 dateUnrestricted=2011-12-31 track EARelease3MethylationViewCOV2 #bigDataUrl EARelease3MethylationViewCOV2.bigWig shortLabel MRE Coverage view COV2 maxHeightPixels 64:32:16 subTrack EARelease3Methylation track UCSFUBC_Fetal_Brain_MRE_HuFNSC01 bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC01.bigWig shortLabel FB MRE 01 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=FB assayType=MRE donorID=HuFNSC01 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=27-281bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.64 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=29 GSM=GSM669604 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MRE_HuFNSC02 bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC02.bigWig shortLabel FB MRE 02 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=FB assayType=MRE donorID=HuFNSC02 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=31-267bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.66 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=43 GSM=GSM669605 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC01 bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC01.bigWig shortLabel NCD MRE 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=NCCCD assayType=MRE donorID=HuFNSC01 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-272bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.8 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=100 GSM=GSM669600 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC02 bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC02.bigWig shortLabel NCD MRE 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=NCCCD assayType=MRE donorID=HuFNSC02 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=20-276bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.73 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=86 GSM=GSM669602 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009 bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009.bigWig shortLabel CD4M MRE 09 longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=CD4M assayType=MRE donorID=TC009 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-279bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.57 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=14 GSM=GSM669599 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC01 bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC01.bigWig shortLabel NGED MRE 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=NCCGED assayType=MRE donorID=HuFNSC01 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=37-278bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.71 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=57 GSM=GSM669601 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC02 bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC02.bigWig shortLabel NGED MRE 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC subTrack EARelease3MethylationViewCOV2 subGroups view=COV2 sampleType=NCCGED assayType=MRE donorID=HuFNSC02 type bigWig 0 90000 noInherit on color 0,100,0 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-253bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.72 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=71 GSM=GSM669603 dateUnrestricted=2011-12-31 track EARelease3UCSFRNA #bigDataUrl EARelease3UCSFRNA.bigWig compositeTrack on shortLabel RNA longLabel RNA-seq Signal by REMC/UCSF-UBC group edacc3 subGroup1 view Views ALN=Alignments COV=Coverage subGroup2 sampleType Sample_Type BH=Breast_vHMEC BLEC=Breast_Luminal_Epithelial_Cells BMC=Breast_Myoepithelial_Cells BSC=Breast_Stem_Cells CD4M=CD4_Memory CD4N=CD4_Naive CD8N=CD8_Naive FB=Fetal_Brain NCCCD=Neurosphere_Cultured_Cells_Cortex_Derived NCCGED=Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived PBMPC=Peripheral_Blood_Mononuclear_Primary_Cells PFKPC=Penis_Foreskin_Keratinocyte_Primary_Cells subGroup3 assayType Assay_Type mRNA=mRNA-Seq subGroup4 donorID Donor/Library TC014=TC014 RM080=RM080 sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 10 visibility hide type bed 3 track EARelease3UCSFRNAViewCOV #bigDataUrl EARelease3UCSFRNAViewCOV.bigWig shortLabel Coverage view COV maxHeightPixels 64:32:16 subTrack EARelease3UCSFRNA track UCSFUBC_PBMPC_mRNA_TC014 bigDataUrl UCSFUBC_PBMPC_mRNA_TC014.bigWig shortLabel PBM mRNA 14 longLabel Peripheral Blood Mononuclear Primary Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=PBMPC assayType=mRNA donorID=TC014 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="PBMC TC014" sample_common_name="Peripheral Blood Mononuclear Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type=PBMC markers=NA donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.1" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=168-367bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669616 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Luminal_Epithelial_Cell_mRNA_RM080 bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_mRNA_RM080.bigWig shortLabel BLEC mRNA 80 longLabel Breast Luminal Epithelial Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=BLEC assayType=mRNA donorID=RM080 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 8.7" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=90-320bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669620 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Myoepithelial_Cell_mRNA_RM080 bigDataUrl UCSFUBC_Breast_Myoepithelial_Cell_mRNA_RM080.bigWig shortLabel BMC mRNA 80 longLabel Breast Myoepithelial Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=BMC assayType=mRNA donorID=RM080 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Myo Epi RM080" sample_common_name="Breast, Myoepithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 7.7" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=121-323bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669621 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Stem_Cell_mRNA_RM080 bigDataUrl UCSFUBC_Breast_Stem_Cell_mRNA_RM080.bigWig shortLabel BSC mRNA 80 longLabel Breast Stem Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=BSC assayType=mRNA donorID=RM080 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Stem Cell RM080" sample_common_name="Breast, Stem Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Stem Cell" markers=CD73+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 7.3" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=108-315bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669622 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Memory_Primary_Cell_mRNA_TC014 bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_mRNA_TC014.bigWig shortLabel CD4M mRNA 14 longLabel CD4 Memory Primary Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=CD4M assayType=mRNA donorID=TC014 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD4 Memory TC014" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC014 donor_age="29 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 8.8" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=94-315bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669618 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Naive_Primary_Cell_mRNA_TC014 bigDataUrl UCSFUBC_CD4_Naive_Primary_Cell_mRNA_TC014.bigWig shortLabel CD4N mRNA 14 longLabel CD4 Naive Primary Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=CD4N assayType=mRNA donorID=TC014 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD4 Naive TC014" sample_common_name="CD4 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.3" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=96-287bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669617 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_mRNA_TC014 bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_mRNA_TC014.bigWig shortLabel CD8N mRNA 14 longLabel CD8 Naive Primary Cell mRNA Signal from REMC/UCSF-UBC subTrack EARelease3UCSFRNAViewCOV subGroups view=COV sampleType=CD8N assayType=mRNA donorID=TC014 type bigWig 0 90000 noInherit on color 66,113,255 autoScale on maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD8 Naive TC014" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 naive" markers="CD8+, CD45RA+" donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=99-294bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669619 dateUnrestricted=2011-12-31 track EARelease3UCSDHistone #bigDataUrl EARelease3UCSDHistone.bigWig compositeTrack on shortLabel UCSD Histone longLabel Histone Modification by Chip-seq from REMC/UCSD group edacc3 subGroup1 view Views ALN=Alignments COV=Coverage subGroup2 sampleType Sample_Type H1=H1 H9=H9 subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input H4K8ac=H4K8ac H3K23ac=H3K23ac H2BK5ac=H2BK5ac subGroup4 donorID Donor/Library AK112=AK112 AK28=AK28 AK58=AK58 AK29=AK29 AK30=AK30 AK35=AK35 AK38=AK38 AK39=AK39 AK40=AK40 AK51=AK51 AK52=AK52 AK53=AK53 AK57=AK57 AK59=AK59 K58=AK58 SAK270=SAK270 SK100=SK100 SK190=SK190 SK193=SK193 SK200=SK200 SK265=SK265 SK276=SK276 SK277=SK277 SK278=SK278 SK282=SK282 SK283=SK283 SK286=SK286 SK287=SK287 SK289=SK289 SK300=SK300 SK328=SK328 SK329=SK329 SK332=SK332 SK99=SK99 SKH9-4=SKH9-4 YL123=YL123 YL236=YL236 YL238=YL238 YL240=YL240 YL241=YL241 YL244=YL244 YL328=YL328 sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 4 visibility hide type bed 3 track EARelease3UCSDHistoneViewCOV #bigDataUrl EARelease3UCSDHistoneViewCOV.bigWig shortLabel Coverage view COV maxHeightPixels 64:32:16 subTrack EARelease3UCSDHistone track UCSD_H1_H3K18ac_AK52 bigDataUrl UCSD_H1_H3K18ac_AK52.bigWig shortLabel H1 H3K18ac 52 longLabel H1 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.0988 Pcnt=67) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K18ac donorID=AK52 type bigWig 0 30 noInherit on color 150,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab52946 chip_antibody_lot=945863 Hotspot_Score=0.0988 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.006 FINDPEAKS_Pcnt=33 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.2303 POISSON_Pcnt=67 GSM=GSM667614 dateUnrestricted=2011-12-23 track UCSD_H1_H3K18ac_AK58 bigDataUrl UCSD_H1_H3K18ac_AK58.bigWig shortLabel H1 H3K18ac 58 longLabel H1 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.0893 Pcnt=33) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K18ac donorID=AK58 type bigWig 0 30 noInherit on color 150,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-09 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab52946 chip_antibody_lot=945863 Hotspot_Score=0.0893 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.0076 FINDPEAKS_Pcnt=67 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.227 POISSON_Pcnt=33 GSM=GSM667615 dateUnrestricted=2011-12-23 track UCSD_H1_H3K23ac_AK53 bigDataUrl UCSD_H1_H3K23ac_AK53.bigWig shortLabel H1 H3K23ac 53 longLabel H1 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0938 Pcnt=75) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K23ac donorID=AK53 type bigWig 0 30 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0938 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=25 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1979 POISSON_Pcnt=75 GSM=GSM667617 dateUnrestricted=2011-12-23 track UCSD_H1_H3K23ac_AK59 bigDataUrl UCSD_H1_H3K23ac_AK59.bigWig shortLabel H1 H3K23ac 59 longLabel H1 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0796 Pcnt=25) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K23ac donorID=AK59 type bigWig 0 30 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-09 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0796 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.0079 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1922 POISSON_Pcnt=50 GSM=GSM667618 dateUnrestricted=2011-12-23 track UCSD_H1_H3K27ac_SAK270 bigDataUrl UCSD_H1_H3K27ac_SAK270.bigWig shortLabel H1 H3K27ac 70 longLabel H1 H3K27ac Signal from REMC/UCSD (Hotspot_Score=0.2837 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K27ac donorID=SAK270 type bigWig 0 30 noInherit on color 0,0,150 autoScale off maxHeightPixels 64:32:16 priority 1 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog="AM 39133" chip_antibody_lot=19208002 Hotspot_Score=0.2837 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.204 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9864 IROC_Pcnt=100 POISSON_SCORE=0.3337 POISSON_Pcnt=100 GSM=GSM663427 dateUnrestricted=2011-12-23 track UCSD_H1_H3K4ac_AK51 bigDataUrl UCSD_H1_H3K4ac_AK51.bigWig shortLabel H1 H3K4ac 51 longLabel H1 H3K4ac Signal from REMC/UCSD (Hotspot_Score=0.0655 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K4ac donorID=AK51 type bigWig 0 30 noInherit on color 255,255,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.0655 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0046 FINDPEAKS_Pcnt=50 IROC_SCORE=0.769 IROC_Pcnt=100 POISSON_SCORE=0.1684 POISSON_Pcnt=50 GSM=GSM667624 dateUnrestricted=2011-12-23 track UCSD_H1_H3K56ac_SK300 bigDataUrl UCSD_H1_H3K56ac_SK300.bigWig shortLabel H1 H3K56ac 00 longLabel H1 H3K56ac Signal from REMC/UCSD (Hotspot_Score=0.0979 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=H3K56ac donorID=SK300 type bigWig 0 30 noInherit on color 0,255,255 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Millipore chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.0979 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0141 FINDPEAKS_Pcnt=50 IROC_SCORE=0.7711 IROC_Pcnt=100 POISSON_SCORE=0.1696 POISSON_Pcnt=50 GSM=GSM667627 dateUnrestricted=2011-12-23 track UCSD_H1_Input_AK57 bigDataUrl UCSD_H1_Input_AK57.bigWig shortLabel H1 Input 57 longLabel H1 Input Signal from REMC/UCSD (Hotspot_Score=0.0846 Pcnt=93) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=Input donorID=AK57 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0846 HOTSPOT_Pcnt=93 FINDPEAKS_SCORE=0.0078 FINDPEAKS_Pcnt=83 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1786 POISSON_Pcnt=93 GSM=GSM667642 dateUnrestricted=2011-12-23 track UCSD_H1_Input_YL328 bigDataUrl UCSD_H1_Input_YL328.bigWig shortLabel H1 Input 28 longLabel H1 Input Signal from REMC/UCSD (Hotspot_Score=0.2124 Pcnt=97) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H1 assayType=Input donorID=YL328 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H1-11 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=33 medium=mTeSER Sex=Male batch=H1J5p33 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2124 HOTSPOT_Pcnt=97 FINDPEAKS_SCORE=0.0733 FINDPEAKS_Pcnt=97 IROC_SCORE=0.7472 IROC_Pcnt=41 POISSON_SCORE=0.2707 POISSON_Pcnt=97 GSM=GSM667641 dateUnrestricted=2011-11-15 track UCSD_H9_H2AK5ac_AK28 bigDataUrl UCSD_H9_H2AK5ac_AK28.bigWig shortLabel H9 H2AK5ac 28 longLabel H9 H2AK5ac Signal from REMC/UCSD (Hotspot_Score=0.0451 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2AK5ac donorID=AK28 type bigWig 0 30 noInherit on color 194,97,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.0451 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0049 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=50 POISSON_SCORE=0.1201 POISSON_Pcnt=50 GSM=GSM667609 dateUnrestricted=2011-12-23 track UCSD_H9_H2AK5ac_SK193 bigDataUrl UCSD_H9_H2AK5ac_SK193.bigWig shortLabel H9 H2AK5ac 93 longLabel H9 H2AK5ac Signal from REMC/UCSD (Hotspot_Score=0.0951 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2AK5ac donorID=SK193 type bigWig 0 30 noInherit on color 194,97,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.0951 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0058 FINDPEAKS_Pcnt=100 IROC_SCORE=0.4792 IROC_Pcnt=100 POISSON_SCORE=0.1874 POISSON_Pcnt=100 GSM=GSM667608 dateUnrestricted=2011-11-15 track UCSD_H9_H2BK12ac_AK112 bigDataUrl UCSD_H9_H2BK12ac_AK112.bigWig shortLabel H9 H2BK12ac 12 longLabel H9 H2BK12ac Signal from REMC/UCSD (Hotspot_Score=0.0757 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2BK12ac donorID=AK112 type bigWig 0 30 noInherit on color 0,0,255 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.0757 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1833 POISSON_Pcnt=50 GSM=GSM667611 dateUnrestricted=2011-11-15 track UCSD_H9_H2BK12ac_AK30 bigDataUrl UCSD_H9_H2BK12ac_AK30.bigWig shortLabel H9 H2BK12ac 30 longLabel H9 H2BK12ac Signal from REMC/UCSD (Hotspot_Score=0.0943 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2BK12ac donorID=AK30 type bigWig 0 30 noInherit on color 0,0,255 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.0943 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0077 FINDPEAKS_Pcnt=100 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1857 POISSON_Pcnt=100 GSM=GSM667610 dateUnrestricted=2011-12-23 track UCSD_H9_H2BK5ac_AK29 bigDataUrl UCSD_H9_H2BK5ac_AK29.bigWig shortLabel H9 H2BK5ac 29 longLabel H9 H2BK5ac Signal from REMC/UCSD (Hotspot_Score=0.0367 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2BK5ac donorID=AK29 type bigWig 0 30 noInherit on color 0,184,50 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider="Active Motif" chip_antibody_catalog=39123 chip_antibody_lot=229 Hotspot_Score=0.0367 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0072 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=50 POISSON_SCORE=0.1114 POISSON_Pcnt=50 GSM=GSM667613 dateUnrestricted=2011-12-23 track UCSD_H9_H2BK5ac_YL244 bigDataUrl UCSD_H9_H2BK5ac_YL244.bigWig shortLabel H9 H2BK5ac 44 longLabel H9 H2BK5ac Signal from REMC/UCSD (Hotspot_Score=0.1227 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H2BK5ac donorID=YL244 type bigWig 0 30 noInherit on color 0,184,50 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40886 chip_antibody_lot=529107 Hotspot_Score=0.1227 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0211 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6287 IROC_Pcnt=100 POISSON_SCORE=0.2312 POISSON_Pcnt=100 GSM=GSM667612 dateUnrestricted=2011-11-15 track UCSD_H9_H3K18ac_SK276 bigDataUrl UCSD_H9_H3K18ac_SK276.bigWig shortLabel H9 H3K18ac 76 longLabel H9 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.1918 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K18ac donorID=SK276 type bigWig 0 30 noInherit on color 150,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=527530 Hotspot_Score=0.1918 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0426 FINDPEAKS_Pcnt=100 IROC_SCORE=0.768 IROC_Pcnt=100 POISSON_SCORE=0.3285 POISSON_Pcnt=100 GSM=GSM667616 dateUnrestricted=2011-12-23 track UCSD_H9_H3K23ac_SK289 bigDataUrl UCSD_H9_H3K23ac_SK289.bigWig shortLabel H9 H3K23ac 89 longLabel H9 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.1619 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K23ac donorID=SK289 type bigWig 0 30 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Millipore chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.1619 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.022 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6618 IROC_Pcnt=100 POISSON_SCORE=0.2651 POISSON_Pcnt=100 GSM=GSM667620 dateUnrestricted=2011-12-23 track UCSD_H9_H3K23ac_YL236 bigDataUrl UCSD_H9_H3K23ac_YL236.bigWig shortLabel H9 H3K23ac 36 longLabel H9 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0938 Pcnt=75) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K23ac donorID=YL236 type bigWig 0 30 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Millipore chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0938 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.0082 FINDPEAKS_Pcnt=75 IROC_SCORE=0.454 IROC_Pcnt=50 POISSON_SCORE=0.1718 POISSON_Pcnt=25 GSM=GSM667619 dateUnrestricted=2011-11-15 track UCSD_H9_H3K23me2_SK277 bigDataUrl UCSD_H9_H3K23me2_SK277.bigWig shortLabel H9 H3K23me2 77 longLabel H9 H3K23me2 Signal from REMC/UCSD (Hotspot_Score=0.2219 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K23me2 donorID=SK277 type bigWig 0 30 noInherit on color 0,110,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.2219 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0632 FINDPEAKS_Pcnt=100 IROC_SCORE=0.838 IROC_Pcnt=100 POISSON_SCORE=0.378 POISSON_Pcnt=100 GSM=GSM667621 dateUnrestricted=2011-12-23 track UCSD_H9_H3K27ac_SK265 bigDataUrl UCSD_H9_H3K27ac_SK265.bigWig shortLabel H9 H3K27ac 65 longLabel H9 H3K27ac Signal from REMC/UCSD (Hotspot_Score=0.1614 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K27ac donorID=SK265 type bigWig 0 30 noInherit on color 0,0,150 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39133 chip_antibody_lot=19208002 Hotspot_Score=0.1614 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0373 FINDPEAKS_Pcnt=50 IROC_SCORE=0.6925 IROC_Pcnt=50 POISSON_SCORE=0.258 POISSON_Pcnt=50 GSM=GSM665037 dateUnrestricted=2011-12-23 track UCSD_H9_H3K27me3_SK99 bigDataUrl UCSD_H9_H3K27me3_SK99.bigWig shortLabel H9 H3K27me3 99 longLabel H9 H3K27me3 Signal from REMC/UCSD (Hotspot_Score=0.3339 Pcnt=85) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K27me3 donorID=SK99 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot="DAM 1612188" Hotspot_Score=0.3339 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.2484 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9276 IROC_Pcnt=80 POISSON_SCORE=0.3684 POISSON_Pcnt=60 GSM=GSM667622 dateUnrestricted=2011-11-15 track UCSD_H9_H3K36me3_SK278 bigDataUrl UCSD_H9_H3K36me3_SK278.bigWig shortLabel H9 H3K36me3 78 longLabel H9 H3K36me3 Signal from REMC/UCSD (Hotspot_Score=0.2786 Pcnt=46) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K36me3 donorID=SK278 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.2786 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.1237 FINDPEAKS_Pcnt=35 IROC_SCORE=0.8764 IROC_Pcnt=8 POISSON_SCORE=0.3951 POISSON_Pcnt=35 GSM=GSM667623 dateUnrestricted=2011-12-23 track UCSD_H9_H3K4ac_SK328 bigDataUrl UCSD_H9_H3K4ac_SK328.bigWig shortLabel H9 H3K4ac 28 longLabel H9 H3K4ac Signal from REMC/UCSD (Hotspot_Score=0.0968 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K4ac donorID=SK328 type bigWig 0 30 noInherit on color 255,255,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.0968 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0076 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6244 IROC_Pcnt=50 POISSON_SCORE=0.2677 POISSON_Pcnt=100 GSM=GSM667625 dateUnrestricted=2011-12-23 track UCSD_H9_H3K4me1_YL123 bigDataUrl UCSD_H9_H3K4me1_YL123.bigWig shortLabel H9 H3K4me1 23 longLabel H9 H3K4me1 Signal from REMC/UCSD (Hotspot_Score=0.3782 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K4me1 donorID=YL123 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.3782 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.2741 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9583 IROC_Pcnt=32 POISSON_SCORE=0.4835 POISSON_Pcnt=39 GSM=GSM667626 dateUnrestricted=2011-11-15 track UCSD_H9_H3K4me2_AK38 bigDataUrl UCSD_H9_H3K4me2_AK38.bigWig shortLabel H9 H3K4me2 38 longLabel H9 H3K4me2 Signal from REMC/UCSD (Hotspot_Score=0.333 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K4me2 donorID=AK38 type bigWig 0 30 noInherit on color 0,82,41 autoScale off maxHeightPixels 64:32:16 priority 1 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=727055 Hotspot_Score=0.333 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.244 FINDPEAKS_Pcnt=100 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.3581 POISSON_Pcnt=100 GSM=GSM616127 dateUnrestricted=2011-12-23 track UCSD_H9_H3K4me3_AK39 bigDataUrl UCSD_H9_H3K4me3_AK39.bigWig shortLabel H9 H3K4me3 39 longLabel H9 H3K4me3 Signal from REMC/UCSD (Hotspot_Score=0.4015 Pcnt=48) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K4me3 donorID=AK39 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=NG1643014 Hotspot_Score=0.4015 HOTSPOT_Pcnt=48 FINDPEAKS_SCORE=0.3245 FINDPEAKS_Pcnt=44 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.3959 POISSON_Pcnt=40 GSM=GSM616128 dateUnrestricted=2011-12-23 track UCSD_H9_H3K56ac_YL238 bigDataUrl UCSD_H9_H3K56ac_YL238.bigWig shortLabel H9 H3K56ac 38 longLabel H9 H3K56ac Signal from REMC/UCSD (Hotspot_Score=0.1193 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K56ac donorID=YL238 type bigWig 0 30 noInherit on color 0,255,255 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Millipore chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.1193 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0217 FINDPEAKS_Pcnt=100 IROC_SCORE=0.5801 IROC_Pcnt=50 POISSON_SCORE=0.2086 POISSON_Pcnt=100 GSM=GSM667628 dateUnrestricted=2011-11-15 track UCSD_H9_H3K79me1_SK329 bigDataUrl UCSD_H9_H3K79me1_SK329.bigWig shortLabel H9 H3K79me1 29 longLabel H9 H3K79me1 Signal from REMC/UCSD (Hotspot_Score=0.1293 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K79me1 donorID=SK329 type bigWig 0 30 noInherit on color 255,0,255 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1293 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0198 FINDPEAKS_Pcnt=100 IROC_SCORE=0.748 IROC_Pcnt=100 POISSON_SCORE=0.2661 POISSON_Pcnt=100 GSM=GSM667629 dateUnrestricted=2011-12-23 track UCSD_H9_H3K79me2_SK190 bigDataUrl UCSD_H9_H3K79me2_SK190.bigWig shortLabel H9 H3K79me2 90 longLabel H9 H3K79me2 Signal from REMC/UCSD (Hotspot_Score=0.2115 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K79me2 donorID=SK190 type bigWig 0 30 noInherit on color 200,200,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.2115 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.1654 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9826 IROC_Pcnt=100 POISSON_SCORE=0.3066 POISSON_Pcnt=100 GSM=GSM667630 dateUnrestricted=2011-11-15 track UCSD_H9_H3K9ac_AK35 bigDataUrl UCSD_H9_H3K9ac_AK35.bigWig shortLabel H9 H3K9ac 35 longLabel H9 H3K9ac Signal from REMC/UCSD (Hotspot_Score=0.1388 Pcnt=8) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K9ac donorID=AK35 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=39137 chip_antibody_lot=1008001 Hotspot_Score=0.1388 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.0282 FINDPEAKS_Pcnt=4 IROC_SCORE=0.631 IROC_Pcnt=4 POISSON_SCORE=0.2166 POISSON_Pcnt=16 GSM=GSM616129 dateUnrestricted=2011-12-23 track UCSD_H9_H3K9me3_AK40 bigDataUrl UCSD_H9_H3K9me3_AK40.bigWig shortLabel H9 H3K9me3 40 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.1465 Pcnt=58) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K9me3 donorID=AK40 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.1465 HOTSPOT_Pcnt=58 FINDPEAKS_SCORE=0.0402 FINDPEAKS_Pcnt=38 IROC_SCORE=0.7488 IROC_Pcnt=19 POISSON_SCORE=0.3359 POISSON_Pcnt=62 GSM=GSM667633 dateUnrestricted=2011-12-23 track UCSD_H9_H3K9me3_SK100 bigDataUrl UCSD_H9_H3K9me3_SK100.bigWig shortLabel H9 H3K9me3 00 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.2196 Pcnt=81) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K9me3 donorID=SK100 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.2196 HOTSPOT_Pcnt=81 FINDPEAKS_SCORE=0.1683 FINDPEAKS_Pcnt=85 IROC_SCORE=0.873 IROC_Pcnt=58 POISSON_SCORE=0.4039 POISSON_Pcnt=85 GSM=GSM667631 dateUnrestricted=2011-11-15 track UCSD_H9_H3K9me3_SK200 bigDataUrl UCSD_H9_H3K9me3_SK200.bigWig shortLabel H9 H3K9me3 01 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.2266 Pcnt=85) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H3K9me3 donorID=SK200 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.2266 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.192 FINDPEAKS_Pcnt=88 IROC_SCORE=0.917 IROC_Pcnt=85 POISSON_SCORE=0.3564 POISSON_Pcnt=69 GSM=GSM667632 dateUnrestricted=2011-11-15 track UCSD_H9_H4K20me1_SK286 bigDataUrl UCSD_H9_H4K20me1_SK286.bigWig shortLabel H9 H4K20me1 86 longLabel H9 H4K20me1 Signal from REMC/UCSD (Hotspot_Score=0.194 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K20me1 donorID=SK286 type bigWig 0 30 noInherit on color 0,200,200 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.194 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0246 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6795 IROC_Pcnt=100 POISSON_SCORE=0.2836 POISSON_Pcnt=100 GSM=GSM667634 dateUnrestricted=2011-12-23 track UCSD_H9_H4K5ac_SK282 bigDataUrl UCSD_H9_H4K5ac_SK282.bigWig shortLabel H9 H4K5ac 82 longLabel H9 H4K5ac Signal from REMC/UCSD (Hotspot_Score=0.1016 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K5ac donorID=SK282 type bigWig 0 30 noInherit on color 200,0,200 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Millipore chip_antibody_catalog=07-327 chip_antibody_lot="DAM 1641101" Hotspot_Score=0.1016 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0134 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.2344 POISSON_Pcnt=50 GSM=GSM667636 dateUnrestricted=2011-12-23 track UCSD_H9_H4K5ac_YL240 bigDataUrl UCSD_H9_H4K5ac_YL240.bigWig shortLabel H9 H4K5ac 40 longLabel H9 H4K5ac Signal from REMC/UCSD (Hotspot_Score=0.15 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K5ac donorID=YL240 type bigWig 0 30 noInherit on color 200,0,200 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=up07-327 chip_antibody_lot=30417 Hotspot_Score=0.15 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0302 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6856 IROC_Pcnt=100 POISSON_SCORE=0.2578 POISSON_Pcnt=100 GSM=GSM667635 dateUnrestricted=2011-11-15 track UCSD_H9_H4K8ac_SK283 bigDataUrl UCSD_H9_H4K8ac_SK283.bigWig shortLabel H9 H4K8ac 83 longLabel H9 H4K8ac Signal from REMC/UCSD (Hotspot_Score=0.1166 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K8ac donorID=SK283 type bigWig 0 30 noInherit on color 150,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.1166 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0131 FINDPEAKS_Pcnt=50 IROC_SCORE=0.5504 IROC_Pcnt=50 POISSON_SCORE=0.2539 POISSON_Pcnt=50 GSM=GSM667638 dateUnrestricted=2011-12-23 track UCSD_H9_H4K8ac_YL241 bigDataUrl UCSD_H9_H4K8ac_YL241.bigWig shortLabel H9 H4K8ac 41 longLabel H9 H4K8ac Signal from REMC/UCSD (Hotspot_Score=0.1714 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K8ac donorID=YL241 type bigWig 0 30 noInherit on color 150,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=Millipore07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.1714 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0319 FINDPEAKS_Pcnt=100 IROC_SCORE=0.7323 IROC_Pcnt=100 POISSON_SCORE=0.2937 POISSON_Pcnt=100 GSM=GSM667637 dateUnrestricted=2011-11-15 track UCSD_H9_H4K91ac_SK287 bigDataUrl UCSD_H9_H4K91ac_SK287.bigWig shortLabel H9 H4K91ac 87 longLabel H9 H4K91ac Signal from REMC/UCSD (Hotspot_Score=0.1802 Pcnt=100) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K91ac donorID=SK287 type bigWig 0 30 noInherit on color 0,150,150 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1802 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0233 FINDPEAKS_Pcnt=100 IROC_SCORE=0.704 IROC_Pcnt=100 POISSON_SCORE=0.3022 POISSON_Pcnt=100 GSM=GSM667639 dateUnrestricted=2011-12-23 track UCSD_H9_H4K91ac_SK332 bigDataUrl UCSD_H9_H4K91ac_SK332.bigWig shortLabel H9 H4K91ac 32 longLabel H9 H4K91ac Signal from REMC/UCSD (Hotspot_Score=0.1165 Pcnt=50) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=H4K91ac donorID=SK332 type bigWig 0 30 noInherit on color 0,150,150 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1165 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0144 FINDPEAKS_Pcnt=50 IROC_SCORE=0.61 IROC_Pcnt=50 POISSON_SCORE=0.2691 POISSON_Pcnt=50 GSM=GSM667640 dateUnrestricted=2011-12-23 track UCSD_H9_Input_SKH9_4 bigDataUrl UCSD_H9_Input_SKH9_4.bigWig shortLabel H9 Input 4 longLabel H9 Input SKH9-Signal from REMC/UCSD (Hotspot_Score=0.0778 Pcnt=90) subTrack EARelease3UCSDHistoneViewCOV subGroups view=COV sampleType=H9 assayType=Input donorID=SKH9-4 type bigWig 0 30 noInherit on color 0,0,133 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0778 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.0124 FINDPEAKS_Pcnt=93 IROC_SCORE=0.9959 IROC_Pcnt=59 POISSON_SCORE=0.0966 POISSON_Pcnt=87 GSM=GSM667643 dateUnrestricted=2011-12-23 track EARelease3UCSFHistone #bigDataUrl EARelease3UCSFHistone.bigWig compositeTrack on shortLabel UCSF Histone longLabel Histone Modification by Chip-seq from REMC/UCSF-UBC group edacc3 subGroup1 view Views ALN=Alignments COV=Coverage subGroup2 sampleType Sample_Type BH=Breast_vHMEC BLEC=Breast_Luminal_Epithelial_Cells BMC=Breast_Myoepithelial_Cells BSC=Breast_Stem_Cells CD4M=CD4_Memory CD4N=CD4_Naive CD8N=CD8_Naive FB=Fetal_Brain NCCCD=Neurosphere_Cultured_Cells_Cortex_Derived NCCGED=Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived PBMPC=Peripheral_Blood_Mononuclear_Primary_Cells PFKPC=Penis_Foreskin_Keratinocyte_Primary_Cells subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input subGroup4 donorID Donor/Library HuFNSC-T=HuFNSC-T RM035=RM035 RM080=RM080 skin01=skin01 skin01=skin01 TC001=TC001 sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 5 visibility hide type bed 3 track EARelease3UCSFHistoneViewCOV #bigDataUrl EARelease3UCSFHistoneViewCOV.bigWig shortLabel Coverage view COV maxHeightPixels 64:32:16 subTrack EARelease3UCSFHistone track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K36me3_RM080 bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K36me3_RM080.bigWig shortLabel BLEC H3K36me3 80 longLabel Breast Luminal Epithelial Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.2208 Pcnt=38) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=BLEC assayType=H3K36me3 donorID=RM080 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=2.5ug size_fraction=81-316bp chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=134025 Hotspot_Score=0.2208 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.1946 FINDPEAKS_Pcnt=42 IROC_SCORE=0.9584 IROC_Pcnt=42 POISSON_SCORE=0.5045 POISSON_Pcnt=62 GSM=GSM669597 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K4me1_RM080 bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K4me1_RM080.bigWig shortLabel BLEC H3K4me1 80 longLabel Breast Luminal Epithelial Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4115 Pcnt=54) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=BLEC assayType=H3K4me1 donorID=RM080 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=54-304bp chip_antibody=H3K4me1 chip_antibody_provider=diagenode chip_antibody_catalog=pAb037050 chip_antibody_lot=A3990011 Hotspot_Score=0.4115 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.3209 FINDPEAKS_Pcnt=54 IROC_SCORE=0.9699 IROC_Pcnt=43 POISSON_SCORE=0.5061 POISSON_Pcnt=46 GSM=GSM669595 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K9me3_RM080 bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K9me3_RM080.bigWig shortLabel BLEC H3K9me3 80 longLabel Breast Luminal Epithelial Cells H3K9me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.1878 Pcnt=73) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=BLEC assayType=H3K9me3 donorID=RM080 type bigWig 0 30 noInherit on color 179,0,92 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=81-301bp chip_antibody=H3K9me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb056050 chip_antibody_lot=A930042 Hotspot_Score=0.1878 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.0984 FINDPEAKS_Pcnt=65 IROC_SCORE=0.816 IROC_Pcnt=35 POISSON_SCORE=0.3925 POISSON_Pcnt=81 GSM=GSM669596 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_HMEC_H3K27me3_RM035 bigDataUrl UCSFUBC_Breast_HMEC_H3K27me3_RM035.bigWig shortLabel Bv H3K27me3 35 longLabel Breast vHMEC H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.21 Pcnt=70) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=BH assayType=H3K27me3 donorID=RM035 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Breast vHMEC RM035" sample_common_name="Breast, vHMEC" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=4ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=221-550bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.21 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.121 FINDPEAKS_Pcnt=65 IROC_SCORE=0.9148 IROC_Pcnt=60 POISSON_SCORE=0.3151 POISSON_Pcnt=40 GSM=GSM669594 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_H3K36me3_TC001 bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_H3K36me3_TC001.bigWig shortLabel CD8N H3K36me3 01 longLabel CD8 Naive Primary Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.1304 Pcnt=4) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=CD8N assayType=H3K36me3 donorID=TC001 type bigWig 0 30 noInherit on color 0,194,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="CD8 Naive TC001" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=10ul size_fraction=81-272bp chip_antibody=H3K36me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9763S chip_antibody_lot=1 Hotspot_Score=0.1304 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0464 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8437 IROC_Pcnt=4 POISSON_SCORE=0.2639 POISSON_Pcnt=4 GSM=GSM669593 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_H3K27me3_HuFNSCT bigDataUrl UCSFUBC_Fetal_Brain_H3K27me3_HuFNSCT.bigWig shortLabel FB H3K27me3 T longLabel Fetal Brain H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.088 Pcnt=25) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=FB assayType=H3K27me3 donorID=HuFNSC-T type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=36-312bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=1 Hotspot_Score=0.088 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.0269 FINDPEAKS_Pcnt=25 IROC_SCORE=0.8947 IROC_Pcnt=50 POISSON_SCORE=0.1606 POISSON_Pcnt=15 GSM=GSM669625 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_H3K4me3_HuFNSCT bigDataUrl UCSFUBC_Fetal_Brain_H3K4me3_HuFNSCT.bigWig shortLabel FB H3K4me3 T longLabel Fetal Brain H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4014 Pcnt=44) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=FB assayType=H3K4me3 donorID=HuFNSC-T type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=54-343bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.4014 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.3981 FINDPEAKS_Pcnt=52 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.4014 POISSON_Pcnt=44 GSM=GSM669624 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_H3K9ac_HuFNSCT bigDataUrl UCSFUBC_Fetal_Brain_H3K9ac_HuFNSCT.bigWig shortLabel FB H3K9ac T longLabel Fetal Brain H3K9ac Signal from REMC/UCSF-UBC (Hotspot_Score=0.1731 Pcnt=20) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=FB assayType=H3K9ac donorID=HuFNSC-T type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=76-355bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1731 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.1226 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9952 IROC_Pcnt=72 POISSON_SCORE=0.2807 POISSON_Pcnt=36 GSM=GSM669623 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K27me3_skin01 bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K27me3_skin01.bigWig shortLabel PFK H3K27me3 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.0676 Pcnt=20) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=PFKPC assayType=H3K27me3 donorID=skin01 type bigWig 0 30 noInherit on color 204,0,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=85-574bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733 chip_antibody_lot=2 Hotspot_Score=0.0676 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0102 FINDPEAKS_Pcnt=20 IROC_SCORE=0.5027 IROC_Pcnt=5 POISSON_SCORE=0.161 POISSON_Pcnt=20 GSM=GSM669592 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me1_skin01 bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me1_skin01.bigWig shortLabel PFK H3K4me1 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.5729 Pcnt=93) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=PFKPC assayType=H3K4me1 donorID=skin01 type bigWig 0 30 noInherit on color 0,133,66 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=2.1ug size_fraction=146-420bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAB-037-050 chip_antibody_lot=A399-002341P Hotspot_Score=0.5729 HOTSPOT_Pcnt=93 FINDPEAKS_SCORE=0.6114 FINDPEAKS_Pcnt=93 IROC_SCORE=0.9966 IROC_Pcnt=82 POISSON_SCORE=0.6842 POISSON_Pcnt=93 GSM=GSM669591 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me3_skin01 bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me3_skin01.bigWig shortLabel PFK H3K4me3 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.7346 Pcnt=100) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=PFKPC assayType=H3K4me3 donorID=skin01 type bigWig 0 30 noInherit on color 0,117,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=147-408bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=2 Hotspot_Score=0.7346 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.731 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9748 IROC_Pcnt=8 POISSON_SCORE=0.7583 POISSON_Pcnt=100 GSM=GSM669589 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K9ac_skin01 bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K9ac_skin01.bigWig shortLabel PFK H3K9ac 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K9ac Signal from REMC/UCSF-UBC (Hotspot_Score=0.5496 Pcnt=100) subTrack EARelease3UCSFHistoneViewCOV subGroups view=COV sampleType=PFKPC assayType=H3K9ac donorID=skin01 type bigWig 0 30 noInherit on color 84,168,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=129-502bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649 chip_antibody_lot=1 Hotspot_Score=0.5496 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6066 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9915 IROC_Pcnt=44 POISSON_SCORE=0.6811 POISSON_Pcnt=100 GSM=GSM669590 dateUnrestricted=2011-12-31 track EARelease3UWDNase #bigDataUrl EARelease3UWDNase.bigWig compositeTrack on shortLabel DNase longLabel DNase Hypersensitivity Raw Signal from REMC/UW group edacc3 subGroup1 view Views ALN=Alignments COV=Coverage subGroup2 sampleType Sample_Type CD3=CD3_Primary_Cells CD4=CD4_Primary_Cells CD56=CD56_Primary_Cells CD8=CD8_Primary_Cells FB=Fetal_Brain FH=Fetal_Heart FIL=Fetal_Intestine_Large FIS=Fetal_Intestine_Small FK=Fetal_Kidney FKL=Fetal_Kidney_Left FKR=Fetal_Kidney_Right FL=Fetal_Lung FLL=Fetal_Lung_Left FLR=Fetal_Lung_Right FT=Fetal_Thymus iPS_DF_19_11=iPS_DF_19.11 iPS_DF_19_7=iPS_DF_19.7 iPS_DF_4_7=iPS_DF_4.7 iPS_DF_6_9=iPS_DF_6.9 subGroup3 assayType Assay_Type DNase=DNase subGroup4 donorID Donor/Library DS15148=DS15148 DS15153=DS15153 DS15164=DS15164 DS15169=DS15169 H-23399=H-23399 H-23419=H-23419 H-23435=H-23435 H-23468=H-23468 H-23500=H-23500 H-23524=H-23524 H-23548=H-23548 H-23589=H-23589 H-23604=H-23604 H-23617=H-23617 H-23640=H-23640 H-23663=H-23663 RO01670=RO01670 RO01689=RO01689 RO01721=RO01721 sortOrder assayType=+ sampleType=+ donorID=+ dimensions dimensionX=assayType dimensionY=sampleType dividers assayType dragAndDrop subTracks priority 7 visibility hide type bed 3 track EARelease3UWDNaseViewCOV #bigDataUrl EARelease3UWDNaseViewCOV.bigWig shortLabel Coverage view COV maxHeightPixels 64:32:16 subTrack EARelease3UWDNase track UW_CD3_Primary_Cells_ChromatinAccessibility_RO01721_DS17198 bigDataUrl UW_CD3_Primary_Cells_ChromatinAccessibility_RO01721_DS17198.bigWig shortLabel CD3 DNase 21 98 longLabel CD3 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4876 Pcnt=82) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD3 assayType=DNase donorID=RO01721 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD3.RO_01721 sample_common_name="CD3 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4876 HOTSPOT_Pcnt=82 FINDPEAKS_SCORE=0.4798 FINDPEAKS_Pcnt=82 IROC_SCORE=0.9973 IROC_Pcnt=95 POISSON_SCORE=0.4584 POISSON_Pcnt=54 GSM=GSM665837 dateUnrestricted=2011-11-02 track UW_CD4_Primary_Cells_ChromatinAccessibility_RO01670_DS15947 bigDataUrl UW_CD4_Primary_Cells_ChromatinAccessibility_RO01670_DS15947.bigWig shortLabel CD4 DNase 70 47 longLabel CD4 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.356 Pcnt=44) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD4 assayType=DNase donorID=RO01670 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD4.RO_01670 sample_common_name="CD4 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD4 Primary Cells" markers=CD4+ donor_id="RO 01670" donor_age="year 33" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.356 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.335 FINDPEAKS_Pcnt=38 IROC_SCORE=0.9937 IROC_Pcnt=46 POISSON_SCORE=0.3675 POISSON_Pcnt=15 GSM=GSM665812 dateUnrestricted=2011-11-02 track UW_CD4_Primary_Cells_ChromatinAccessibility_RO01721_DS17212 bigDataUrl UW_CD4_Primary_Cells_ChromatinAccessibility_RO01721_DS17212.bigWig shortLabel CD4 DNase 21 12 longLabel CD4 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.489 Pcnt=85) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD4 assayType=DNase donorID=RO01721 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD4.RO_01721 sample_common_name="CD4 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD4 Primary Cells" markers=CD4+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.489 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.4851 FINDPEAKS_Pcnt=85 IROC_SCORE=0.9946 IROC_Pcnt=59 POISSON_SCORE=0.4804 POISSON_Pcnt=59 GSM=GSM665839 dateUnrestricted=2011-11-02 track UW_CD56_Primary_Cells_ChromatinAccessibility_RO01721_DS17189 bigDataUrl UW_CD56_Primary_Cells_ChromatinAccessibility_RO01721_DS17189.bigWig shortLabel CD56 DNase 21 89 longLabel CD56 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6307 Pcnt=97) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD56 assayType=DNase donorID=RO01721 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD56.RO_01721 sample_common_name="CD56 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD56 Primary Cells" markers=CD56+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.6307 HOTSPOT_Pcnt=97 FINDPEAKS_SCORE=0.6182 FINDPEAKS_Pcnt=95 IROC_SCORE=0.9975 IROC_Pcnt=97 POISSON_SCORE=0.5813 POISSON_Pcnt=87 GSM=GSM665836 dateUnrestricted=2011-11-02 track UW_CD8_Primary_Cells_ChromatinAccessibility_RO01670_DS16012 bigDataUrl UW_CD8_Primary_Cells_ChromatinAccessibility_RO01670_DS16012.bigWig shortLabel CD8 DNase 70 12 longLabel CD8 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2432 Pcnt=3) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD8 assayType=DNase donorID=RO01670 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD8.RO_01670 sample_common_name="CD8 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD8 Primary Cells" markers=CD8+ donor_id="RO 01670" donor_age="year 33" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2432 HOTSPOT_Pcnt=3 FINDPEAKS_SCORE=0.2532 FINDPEAKS_Pcnt=10 IROC_SCORE=0.9927 IROC_Pcnt=31 POISSON_SCORE=0.3042 POISSON_Pcnt=3 GSM=GSM665813 dateUnrestricted=2011-11-02 track UW_CD8_Primary_Cells_ChromatinAccessibility_RO01721_DS17203 bigDataUrl UW_CD8_Primary_Cells_ChromatinAccessibility_RO01721_DS17203.bigWig shortLabel CD8 DNase 21 03 longLabel CD8 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6695 Pcnt=100) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD8 assayType=DNase donorID=RO01721 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD8.RO_01721 sample_common_name="CD8 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD8 Primary Cells" markers=CD8+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.6695 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6535 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9962 IROC_Pcnt=79 POISSON_SCORE=0.626 POISSON_Pcnt=95 GSM=GSM665838 dateUnrestricted=2011-11-02 track UW_Fetal_Brain_ChromatinAccessibility_H23399_DS15453 bigDataUrl UW_Fetal_Brain_ChromatinAccessibility_H23399_DS15453.bigWig shortLabel FB DNase 99 53 longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3261 Pcnt=31) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FB assayType=DNase donorID=H-23399 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fBrain.H-23399d112 sample_common_name="Fetal Brain" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Brain" tissue_depot=UW collection_method=fetal donor_id=H-23399 donor_age="day 112" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3261 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.3342 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9913 IROC_Pcnt=23 POISSON_SCORE=0.4304 POISSON_Pcnt=41 GSM=GSM665804 dateUnrestricted=2011-11-02 track UW_Fetal_Brain_ChromatinAccessibility_H23548_DS16302 bigDataUrl UW_Fetal_Brain_ChromatinAccessibility_H23548_DS16302.bigWig shortLabel FB DNase 48 02 longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4057 Pcnt=62) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FB assayType=DNase donorID=H-23548 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fBrain.H-23548d142 sample_common_name="Fetal Brain" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Brain" tissue_depot=UW collection_method=fetal donor_id=H-23548 donor_age="day 142" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4057 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.4211 FINDPEAKS_Pcnt=62 IROC_SCORE=0.9952 IROC_Pcnt=69 POISSON_SCORE=0.4854 POISSON_Pcnt=62 GSM=GSM665819 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23468_DS15839 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23468_DS15839.bigWig shortLabel FH DNase 68 39 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3943 Pcnt=54) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23468 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23468d96 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23468 donor_age="day 96" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3943 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.3632 FINDPEAKS_Pcnt=44 IROC_SCORE=0.9934 IROC_Pcnt=44 POISSON_SCORE=0.4961 POISSON_Pcnt=72 GSM=GSM665811 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23500_DS16018 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23500_DS16018.bigWig shortLabel FH DNase 00 18 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.514 Pcnt=87) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23500 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23500d103 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23500 donor_age="day 103" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.514 HOTSPOT_Pcnt=87 FINDPEAKS_SCORE=0.5109 FINDPEAKS_Pcnt=87 IROC_SCORE=0.9972 IROC_Pcnt=90 POISSON_SCORE=0.603 POISSON_Pcnt=92 GSM=GSM665814 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23524_DS16146 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23524_DS16146.bigWig shortLabel FH DNase 24 46 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4354 Pcnt=69) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23524 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23524d105 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4354 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.4475 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9948 IROC_Pcnt=62 POISSON_SCORE=0.5059 POISSON_Pcnt=74 GSM=GSM665817 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23589_DS16500 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23589_DS16500.bigWig shortLabel FH DNase 89 00 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3977 Pcnt=56) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23589 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23589d147 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3977 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.4152 FINDPEAKS_Pcnt=56 IROC_SCORE=0.9946 IROC_Pcnt=59 POISSON_SCORE=0.515 POISSON_Pcnt=79 GSM=GSM665824 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23604_DS16582 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23604_DS16582.bigWig shortLabel FH DNase 04 82 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5893 Pcnt=92) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23604d110 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.5893 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.6087 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9965 IROC_Pcnt=85 POISSON_SCORE=0.6457 POISSON_Pcnt=100 GSM=GSM665830 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23617_DS16621 bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23617_DS16621.bigWig shortLabel FH DNase 17 21 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5164 Pcnt=90) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FH assayType=DNase donorID=H-23617 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fHeart.H-23617d110 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23617 donor_age="day 110" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.5164 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.5235 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9959 IROC_Pcnt=77 POISSON_SCORE=0.5904 POISSON_Pcnt=90 GSM=GSM665831 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23500_DS16027 bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23500_DS16027.bigWig shortLabel FIL DNase 00 27 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3019 Pcnt=18) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FIL assayType=DNase donorID=H-23500 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fIntestine_Large.H-23500d103 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23500 donor_age="day 103" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3019 HOTSPOT_Pcnt=18 FINDPEAKS_SCORE=0.2993 FINDPEAKS_Pcnt=21 IROC_SCORE=0.9912 IROC_Pcnt=21 POISSON_SCORE=0.3732 POISSON_Pcnt=21 GSM=GSM665815 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23524_DS16164 bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23524_DS16164.bigWig shortLabel FIL DNase 24 64 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4383 Pcnt=72) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FIL assayType=DNase donorID=H-23524 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fIntestine_Large.H-23524d105 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4383 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.4466 FINDPEAKS_Pcnt=69 IROC_SCORE=0.9973 IROC_Pcnt=95 POISSON_SCORE=0.4866 POISSON_Pcnt=64 GSM=GSM665818 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23604_DS16563 bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23604_DS16563.bigWig shortLabel FIL DNase 04 63 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3485 Pcnt=38) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FIL assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fIntestine_Large.H-23604d110 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3485 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.3569 FINDPEAKS_Pcnt=41 IROC_SCORE=0.995 IROC_Pcnt=67 POISSON_SCORE=0.4078 POISSON_Pcnt=33 GSM=GSM665826 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Small_ChromatinAccessibility_H23604_DS16559 bigDataUrl UW_Fetal_Intestine_Small_ChromatinAccessibility_H23604_DS16559.bigWig shortLabel FIS DNase 04 59 longLabel Fetal Intestine Small DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3599 Pcnt=46) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FIS assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fIntestine_Small.H-23604d110 sample_common_name="Fetal Intestine, Small" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Small" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3599 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.3725 FINDPEAKS_Pcnt=51 IROC_SCORE=0.9956 IROC_Pcnt=72 POISSON_SCORE=0.4353 POISSON_Pcnt=49 GSM=GSM665825 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Small_ChromatinAccessibility_H23663_DS16822 bigDataUrl UW_Fetal_Intestine_Small_ChromatinAccessibility_H23663_DS16822.bigWig shortLabel FIS DNase 63 22 longLabel Fetal Intestine Small DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3638 Pcnt=49) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FIS assayType=DNase donorID=H-23663 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fIntestine_Small.H-23663d105 sample_common_name="Fetal Intestine, Small" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Small" tissue_depot=UW collection_method=fetal donor_id=H-23663 donor_age="day 105" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3638 HOTSPOT_Pcnt=49 FINDPEAKS_SCORE=0.37 FINDPEAKS_Pcnt=49 IROC_SCORE=0.9957 IROC_Pcnt=74 POISSON_SCORE=0.4147 POISSON_Pcnt=36 GSM=GSM665835 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_ChromatinAccessibility_H23524_DS16139 bigDataUrl UW_Fetal_Kidney_ChromatinAccessibility_H23524_DS16139.bigWig shortLabel FK DNase 24 39 longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3424 Pcnt=36) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FK assayType=DNase donorID=H-23524 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney.H-23524d105 sample_common_name="Fetal Kidney" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3424 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2999 FINDPEAKS_Pcnt=23 IROC_SCORE=0.9701 IROC_Pcnt=3 POISSON_SCORE=0.3977 POISSON_Pcnt=28 GSM=GSM665816 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23589_DS16446 bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23589_DS16446.bigWig shortLabel FKL DNase 89 46 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2565 Pcnt=5) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKL assayType=DNase donorID=H-23589 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Left.H-23589d147 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2565 HOTSPOT_Pcnt=5 FINDPEAKS_SCORE=0.2532 FINDPEAKS_Pcnt=10 IROC_SCORE=0.9857 IROC_Pcnt=5 POISSON_SCORE=0.3514 POISSON_Pcnt=10 GSM=GSM665822 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23604_DS16579 bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23604_DS16579.bigWig shortLabel FKL DNase 04 79 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.325 Pcnt=28) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKL assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Left.H-23604d110 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.325 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.3242 FINDPEAKS_Pcnt=31 IROC_SCORE=0.9891 IROC_Pcnt=15 POISSON_SCORE=0.4351 POISSON_Pcnt=46 GSM=GSM665829 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23640_DS16805 bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23640_DS16805.bigWig shortLabel FKL DNase 40 05 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.625 Pcnt=95) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKL assayType=DNase donorID=H-23640 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Left.H-23640d115 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.625 HOTSPOT_Pcnt=95 FINDPEAKS_SCORE=0.6266 FINDPEAKS_Pcnt=97 IROC_SCORE=0.9969 IROC_Pcnt=87 POISSON_SCORE=0.6388 POISSON_Pcnt=97 GSM=GSM665834 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23435_DS15651 bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23435_DS15651.bigWig shortLabel FKR DNase 35 51 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3156 Pcnt=23) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKR assayType=DNase donorID=H-23435 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Right.H-23435d117 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3156 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.3134 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9885 IROC_Pcnt=10 POISSON_SCORE=0.4195 POISSON_Pcnt=38 GSM=GSM665810 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23589_DS16441 bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23589_DS16441.bigWig shortLabel FKR DNase 89 41 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.317 Pcnt=26) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKR assayType=DNase donorID=H-23589 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Right.H-23589d147 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.317 HOTSPOT_Pcnt=26 FINDPEAKS_SCORE=0.3276 FINDPEAKS_Pcnt=33 IROC_SCORE=0.9879 IROC_Pcnt=8 POISSON_SCORE=0.4009 POISSON_Pcnt=31 GSM=GSM665821 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23640_DS16801 bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23640_DS16801.bigWig shortLabel FKR DNase 40 01 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4546 Pcnt=79) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FKR assayType=DNase donorID=H-23640 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fKidney_Right.H-23640d115 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4546 HOTSPOT_Pcnt=79 FINDPEAKS_SCORE=0.4637 FINDPEAKS_Pcnt=79 IROC_SCORE=0.9941 IROC_Pcnt=54 POISSON_SCORE=0.5204 POISSON_Pcnt=82 GSM=GSM665833 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_ChromatinAccessibility_H23399_DS15461 bigDataUrl UW_Fetal_Lung_ChromatinAccessibility_H23399_DS15461.bigWig shortLabel FL DNase 99 61 longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4228 Pcnt=67) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FL assayType=DNase donorID=H-23399 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung.H-23399d112 sample_common_name="Fetal Lung" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung" tissue_depot=UW collection_method=fetal donor_id=H-23399 donor_age="day 112" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4228 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.4375 FINDPEAKS_Pcnt=67 IROC_SCORE=0.9931 IROC_Pcnt=33 POISSON_SCORE=0.4915 POISSON_Pcnt=69 GSM=GSM665805 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_ChromatinAccessibility_H23419_DS15573 bigDataUrl UW_Fetal_Lung_ChromatinAccessibility_H23419_DS15573.bigWig shortLabel FL DNase 19 73 longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3539 Pcnt=41) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FL assayType=DNase donorID=H-23419 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung.H-23419d82 sample_common_name="Fetal Lung" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung" tissue_depot=UW collection_method=fetal donor_id=H-23419 donor_age="day 82" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3539 HOTSPOT_Pcnt=41 FINDPEAKS_SCORE=0.3656 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9925 IROC_Pcnt=28 POISSON_SCORE=0.4314 POISSON_Pcnt=44 GSM=GSM665806 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Left_ChromatinAccessibility_H23435_DS15637 bigDataUrl UW_Fetal_Lung_Left_ChromatinAccessibility_H23435_DS15637.bigWig shortLabel FLL DNase 35 37 longLabel Fetal Lung Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.378 Pcnt=51) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FLL assayType=DNase donorID=H-23435 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung_Left.H-23435d117 sample_common_name="Fetal Lung, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Left" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.378 HOTSPOT_Pcnt=51 FINDPEAKS_SCORE=0.3959 FINDPEAKS_Pcnt=54 IROC_SCORE=0.9932 IROC_Pcnt=36 POISSON_SCORE=0.4521 POISSON_Pcnt=51 GSM=GSM665808 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Left_ChromatinAccessibility_H23604_DS16570 bigDataUrl UW_Fetal_Lung_Left_ChromatinAccessibility_H23604_DS16570.bigWig shortLabel FLL DNase 04 70 longLabel Fetal Lung Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4467 Pcnt=74) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FLL assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung_Left.H-23604d110 sample_common_name="Fetal Lung, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Left" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4467 HOTSPOT_Pcnt=74 FINDPEAKS_SCORE=0.4611 FINDPEAKS_Pcnt=77 IROC_SCORE=0.9939 IROC_Pcnt=51 POISSON_SCORE=0.5077 POISSON_Pcnt=77 GSM=GSM665828 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23435_DS15632 bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23435_DS15632.bigWig shortLabel FLR DNase 35 32 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4206 Pcnt=64) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FLR assayType=DNase donorID=H-23435 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung_Right.H-23435d117 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4206 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4306 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9938 IROC_Pcnt=49 POISSON_SCORE=0.4901 POISSON_Pcnt=67 GSM=GSM665807 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23604_DS16566 bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23604_DS16566.bigWig shortLabel FLR DNase 04 66 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4497 Pcnt=77) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FLR assayType=DNase donorID=H-23604 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung_Right.H-23604d110 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4497 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.4574 FINDPEAKS_Pcnt=74 IROC_SCORE=0.9949 IROC_Pcnt=64 POISSON_SCORE=0.5246 POISSON_Pcnt=85 GSM=GSM665827 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23640_DS16790 bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23640_DS16790.bigWig shortLabel FLR DNase 40 90 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4037 Pcnt=59) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FLR assayType=DNase donorID=H-23640 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fLung_Right.H-23640d115 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4037 HOTSPOT_Pcnt=59 FINDPEAKS_SCORE=0.4185 FINDPEAKS_Pcnt=59 IROC_SCORE=0.9916 IROC_Pcnt=26 POISSON_SCORE=0.4651 POISSON_Pcnt=56 GSM=GSM665832 dateUnrestricted=2011-11-02 track UW_Fetal_Thymus_ChromatinAccessibility_H23589_DS16490 bigDataUrl UW_Fetal_Thymus_ChromatinAccessibility_H23589_DS16490.bigWig shortLabel FT DNase 89 90 longLabel Fetal Thymus DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.301 Pcnt=15) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=FT assayType=DNase donorID=H-23589 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=fThymus.H-23589d147 sample_common_name="Fetal Thymus" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Thymus" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.301 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.304 FINDPEAKS_Pcnt=26 IROC_SCORE=0.9963 IROC_Pcnt=82 POISSON_SCORE=0.3506 POISSON_Pcnt=8 GSM=GSM665823 dateUnrestricted=2011-11-02 track UW_iPS_DF_19_11_ChromatinAccessibility_DS15153 bigDataUrl UW_iPS_DF_19_11_ChromatinAccessibility_DS15153.bigWig shortLabel iD19.11 DNase 53 53 longLabel iPS DF19.11 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3406 Pcnt=33) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=iPS_DF_19_11 assayType=DNase donorID=DS15153 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=iPS_19_11 sample_common_name="iPS DF 19.11 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 19.11 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=31 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3406 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.2874 FINDPEAKS_Pcnt=18 IROC_SCORE=0.9933 IROC_Pcnt=41 POISSON_SCORE=0.394 POISSON_Pcnt=26 GSM=GSM665801 dateUnrestricted=2011-11-02 track UW_iPS_DF_19_7_ChromatinAccessibility_DS15148 bigDataUrl UW_iPS_DF_19_7_ChromatinAccessibility_DS15148.bigWig shortLabel iD19.7 DNase 48 48 longLabel iPS DF19.7 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3004 Pcnt=13) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=iPS_DF_19_7 assayType=DNase donorID=DS15148 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=iPS_19_7 sample_common_name="iPS DF 19.7 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 19.7 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3004 HOTSPOT_Pcnt=13 FINDPEAKS_SCORE=0.2528 FINDPEAKS_Pcnt=5 IROC_SCORE=0.9933 IROC_Pcnt=41 POISSON_SCORE=0.3539 POISSON_Pcnt=13 GSM=GSM665800 dateUnrestricted=2011-11-02 track UW_iPS_DF_4_7_ChromatinAccessibility_DS15169 bigDataUrl UW_iPS_DF_4_7_ChromatinAccessibility_DS15169.bigWig shortLabel iD4.7 DNase 69 69 longLabel iPS DF4.7 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2838 Pcnt=10 ) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=iPS_DF_4_7 assayType=DNase donorID=DS15169 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=iPS_4_7 sample_common_name="iPS DF 4.7 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 4.7 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2838 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.2341 FINDPEAKS_Pcnt=3 IROC_SCORE=0.9886 IROC_Pcnt=13 POISSON_SCORE=0.3696 POISSON_Pcnt=18 GSM=GSM665803 dateUnrestricted=2011-11-02 track UW_iPS_DF_6_9_ChromatinAccessibility_DS15164 bigDataUrl UW_iPS_DF_6_9_ChromatinAccessibility_DS15164.bigWig shortLabel iD6.9 DNase 64 64 longLabel iPS DF6.9 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.307 Pcnt=21) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=iPS_DF_6_9 assayType=DNase donorID=DS15164 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=iPS_6_9 sample_common_name="iPS DF 6.9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 6.9 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.307 HOTSPOT_Pcnt=21 FINDPEAKS_SCORE=0.2693 FINDPEAKS_Pcnt=15 IROC_SCORE=0.9907 IROC_Pcnt=18 POISSON_SCORE=0.3938 POISSON_Pcnt=23 GSM=GSM665802 dateUnrestricted=2011-11-02 track UW_MCD56_Primary_Cells_DNase_RO01689_DS16376 bigDataUrl UW_MCD56_Primary_Cells_DNase_RO01689_DS16376.bigWig shortLabel MCD56 DNase 89 76 longLabel Mobilized CD56 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.266 Pcnt=8) subTrack EARelease3UWDNaseViewCOV subGroups view=COV sampleType=CD56 assayType=DNase donorID=RO01689 type bigWig 1 80 noInherit on color 0,150,0 autoScale off maxHeightPixels 64:32:16 priority 1 metadata sample_alias=CD56.RO_01689 sample_common_name="Mobilized CD56 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="Mobilized CD56 Primary Cells" markers=CD56+ donor_id="RO 01689" donor_age="year 34" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.266 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.2682 FINDPEAKS_Pcnt=13 IROC_SCORE=0.9976 IROC_Pcnt=100 POISSON_SCORE=0.31 POISSON_Pcnt=5 GSM=GSM665820 dateUnrestricted=2011-11-02 track edacc3ContainerbyExperiment superTrack on show shortLabel Summary longLabel Summary priority 1 track containeredacc3H2BK12ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H2BK12ac Summary longLabel Epigenome Atlas Release III H2BK12ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H2BK12ac_AK112t bigDataUrl UCSD_H9_H2BK12ac_AK112.bigWig shortLabel H9 H2BK12ac 12 longLabel H9 H2BK12ac Signal from REMC/UCSD (Hotspot_Score=0.0757 Pcnt=50) type bigWig 0 90000 parent containeredacc3H2BK12ac color 176,224,230 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.0757 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1833 POISSON_Pcnt=50 GSM=GSM667611 dateUnrestricted=2011-11-15 track UCSD_H9_H2BK12ac_AK30t bigDataUrl UCSD_H9_H2BK12ac_AK30.bigWig shortLabel H9 H2BK12ac 30 longLabel H9 H2BK12ac Signal from REMC/UCSD (Hotspot_Score=0.0943 Pcnt=100) type bigWig 0 90000 parent containeredacc3H2BK12ac color 93,224,230 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.0943 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0077 FINDPEAKS_Pcnt=100 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1857 POISSON_Pcnt=100 GSM=GSM667610 dateUnrestricted=2011-12-23 track containeredacc3mRNA container multiWig superTrack edacc3ContainerbyExperiment shortLabel mRNA-Seq Summary longLabel Epigenome Atlas Release III mRNA-Seq Summary for 7 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSFUBC_PBMPC_mRNA_TC014t bigDataUrl UCSFUBC_PBMPC_mRNA_TC014.bigWig shortLabel PBM mRNA 14 longLabel Peripheral Blood Mononuclear Primary Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 66,113,255 metadata sample_alias="PBMC TC014" sample_common_name="Peripheral Blood Mononuclear Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type=PBMC markers=NA donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.1" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=168-367bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669616 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Luminal_Epithelial_Cell_mRNA_RM080t bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_mRNA_RM080.bigWig shortLabel BLEC mRNA 80 longLabel Breast Luminal Epithelial Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 58,113,255 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 8.7" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=90-320bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669620 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Myoepithelial_Cell_mRNA_RM080t bigDataUrl UCSFUBC_Breast_Myoepithelial_Cell_mRNA_RM080.bigWig shortLabel BMC mRNA 80 longLabel Breast Myoepithelial Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 50,113,255 metadata sample_alias="Breast Myo Epi RM080" sample_common_name="Breast, Myoepithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 7.7" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=121-323bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669621 dateUnrestricted=2011-12-31 track UCSFUBC_Breast_Stem_Cell_mRNA_RM080t bigDataUrl UCSFUBC_Breast_Stem_Cell_mRNA_RM080.bigWig shortLabel BSC mRNA 80 longLabel Breast Stem Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 42,113,255 metadata sample_alias="Breast Stem Cell RM080" sample_common_name="Breast, Stem Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Stem Cell" markers=CD73+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 7.3" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=108-315bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669622 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Memory_Primary_Cell_mRNA_TC014t bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_mRNA_TC014.bigWig shortLabel CD4M mRNA 14 longLabel CD4 Memory Primary Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 34,113,255 metadata sample_alias="CD4 Memory TC014" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC014 donor_age="29 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 8.8" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=94-315bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669618 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Naive_Primary_Cell_mRNA_TC014t bigDataUrl UCSFUBC_CD4_Naive_Primary_Cell_mRNA_TC014.bigWig shortLabel CD4N mRNA 14 longLabel CD4 Naive Primary Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 26,113,255 metadata sample_alias="CD4 Naive TC014" sample_common_name="CD4 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.3" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=96-287bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669617 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_mRNA_TC014t bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_mRNA_TC014.bigWig shortLabel CD8N mRNA 14 longLabel CD8 Naive Primary Cell mRNA Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3mRNA color 18,113,255 metadata sample_alias="CD8 Naive TC014" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 naive" markers="CD8+, CD45RA+" donor_id=TC014 donor_age=29 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Asian/Hawaiian/Eskimo passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type= experiment_type=mRNA-Seq extraction_protocol="Costello Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9" rna_preparation_initial_rna_qnty="2 ug" rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=99-294bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98C 30 sec, 10 cycle of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence=AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT library_generation_pcr_r_primer_sequence=CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM669619 dateUnrestricted=2011-12-31 track containeredacc3H4K20me1 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H4K20me1 Summary longLabel Epigenome Atlas Release III H4K20me1 Summary for 1 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H4K20me1_SK286t bigDataUrl UCSD_H9_H4K20me1_SK286.bigWig shortLabel H9 H4K20me1 86 longLabel H9 H4K20me1 Signal from REMC/UCSD (Hotspot_Score=0.194 Pcnt=100) type bigWig 0 90000 parent containeredacc3H4K20me1 color 0,200,200 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.194 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0246 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6795 IROC_Pcnt=100 POISSON_SCORE=0.2836 POISSON_Pcnt=100 GSM=GSM667634 dateUnrestricted=2011-12-23 track containeredacc3H3K4me2 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K4me2 Summary longLabel Epigenome Atlas Release III H3K4me2 Summary for 1 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H3K4me2_AK38t bigDataUrl UCSD_H9_H3K4me2_AK38.bigWig shortLabel H9 H3K4me2 38 longLabel H9 H3K4me2 Signal from REMC/UCSD (Hotspot_Score=0.333 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K4me2 color 0,250,81 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=727055 Hotspot_Score=0.333 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.244 FINDPEAKS_Pcnt=100 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.3581 POISSON_Pcnt=100 GSM=GSM616127 dateUnrestricted=2011-12-23 track containeredacc3H2AK5ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H2AK5ac Summary longLabel Epigenome Atlas Release III H2AK5ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H2AK5ac_AK28t bigDataUrl UCSD_H9_H2AK5ac_AK28.bigWig shortLabel H9 H2AK5ac 28 longLabel H9 H2AK5ac Signal from REMC/UCSD (Hotspot_Score=0.0451 Pcnt=50) type bigWig 0 90000 parent containeredacc3H2AK5ac color 194,97,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.0451 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0049 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=50 POISSON_SCORE=0.1201 POISSON_Pcnt=50 GSM=GSM667609 dateUnrestricted=2011-12-23 track UCSD_H9_H2AK5ac_SK193t bigDataUrl UCSD_H9_H2AK5ac_SK193.bigWig shortLabel H9 H2AK5ac 93 longLabel H9 H2AK5ac Signal from REMC/UCSD (Hotspot_Score=0.0951 Pcnt=100) type bigWig 0 90000 parent containeredacc3H2AK5ac color 102,97,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.0951 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0058 FINDPEAKS_Pcnt=100 IROC_SCORE=0.4792 IROC_Pcnt=100 POISSON_SCORE=0.1874 POISSON_Pcnt=100 GSM=GSM667608 dateUnrestricted=2011-11-15 track containeredacc3H3K27ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K27ac Summary longLabel Epigenome Atlas Release III H3K27ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_H3K27ac_SAK270t bigDataUrl UCSD_H1_H3K27ac_SAK270.bigWig shortLabel H1 H3K27ac 70 longLabel H1 H3K27ac Signal from REMC/UCSD (Hotspot_Score=0.2837 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K27ac color 0,0,150 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog="AM 39133" chip_antibody_lot=19208002 Hotspot_Score=0.2837 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.204 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9864 IROC_Pcnt=100 POISSON_SCORE=0.3337 POISSON_Pcnt=100 GSM=GSM663427 dateUnrestricted=2011-12-23 track UCSD_H9_H3K27ac_SK265t bigDataUrl UCSD_H9_H3K27ac_SK265.bigWig shortLabel H9 H3K27ac 65 longLabel H9 H3K27ac Signal from REMC/UCSD (Hotspot_Score=0.1614 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K27ac color 0,0,250 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39133 chip_antibody_lot=19208002 Hotspot_Score=0.1614 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0373 FINDPEAKS_Pcnt=50 IROC_SCORE=0.6925 IROC_Pcnt=50 POISSON_SCORE=0.258 POISSON_Pcnt=50 GSM=GSM665037 dateUnrestricted=2011-12-23 track containeredacc3H3K56ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K56ac Summary longLabel Epigenome Atlas Release III H3K56ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_H3K56ac_SK300t bigDataUrl UCSD_H1_H3K56ac_SK300.bigWig shortLabel H1 H3K56ac 00 longLabel H1 H3K56ac Signal from REMC/UCSD (Hotspot_Score=0.0979 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K56ac color 0,255,255 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Millipore chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.0979 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0141 FINDPEAKS_Pcnt=50 IROC_SCORE=0.7711 IROC_Pcnt=100 POISSON_SCORE=0.1696 POISSON_Pcnt=50 GSM=GSM667627 dateUnrestricted=2011-12-23 track UCSD_H9_H3K56ac_YL238t bigDataUrl UCSD_H9_H3K56ac_YL238.bigWig shortLabel H9 H3K56ac 38 longLabel H9 H3K56ac Signal from REMC/UCSD (Hotspot_Score=0.1193 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K56ac color 0,155,155 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Millipore chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.1193 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0217 FINDPEAKS_Pcnt=100 IROC_SCORE=0.5801 IROC_Pcnt=50 POISSON_SCORE=0.2086 POISSON_Pcnt=100 GSM=GSM667628 dateUnrestricted=2011-11-15 track containeredacc3H3K36me3 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K36me3 Summary longLabel Epigenome Atlas Release III H3K36me3 Summary for 26 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_H3K36me3_92t bigDataUrl BI_Adipose_Nuclei_H3K36me3_92.bigWig shortLabel AN H3K36me3 92 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3256 Pcnt=65) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,204,100 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3256 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.3214 FINDPEAKS_Pcnt=58 IROC_SCORE=0.9906 IROC_Pcnt=65 POISSON_SCORE=0.4877 POISSON_Pcnt=50 GSM=GSM669952 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_93t bigDataUrl BI_Adipose_Nuclei_H3K36me3_93.bigWig shortLabel AN H3K36me3 93 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2924 Pcnt=54) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,197,100 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2924 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.2211 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9693 IROC_Pcnt=46 POISSON_SCORE=0.3817 POISSON_Pcnt=31 GSM=GSM670014 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_94t bigDataUrl BI_Adipose_Nuclei_H3K36me3_94.bigWig shortLabel AN H3K36me3 94 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3287 Pcnt=69) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,190,100 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3287 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.3345 FINDPEAKS_Pcnt=62 IROC_SCORE=0.9904 IROC_Pcnt=62 POISSON_SCORE=0.503 POISSON_Pcnt=58 GSM=GSM669979 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K36me3_95t bigDataUrl BI_Adipose_Nuclei_H3K36me3_95.bigWig shortLabel AN H3K36me3 95 longLabel Adipose Nuclei H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4951 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,183,100 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4951 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.5477 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9983 IROC_Pcnt=100 POISSON_SCORE=0.6715 POISSON_Pcnt=96 GSM=GSM669997 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K36me3_4t bigDataUrl BI_Adult_Liver_H3K36me3_4.bigWig shortLabel AL H3K36me3 4 longLabel Adult Liver H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.4527 Pcnt=96) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,176,100 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4527 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.5477 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9979 IROC_Pcnt=96 POISSON_SCORE=0.6952 POISSON_Pcnt=100 GSM=GSM669931 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_58.bigWig shortLabel BMDMSC H3K36me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2855 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,169,100 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2855 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.3022 FINDPEAKS_Pcnt=54 IROC_SCORE=0.985 IROC_Pcnt=54 POISSON_SCORE=0.5102 POISSON_Pcnt=65 GSM=GSM670037 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59.bigWig shortLabel BMDMSC H3K36me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.2426 Pcnt=42) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,162,100 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2426 HOTSPOT_Pcnt=42 FINDPEAKS_SCORE=0.2227 FINDPEAKS_Pcnt=50 IROC_SCORE=0.9735 IROC_Pcnt=50 POISSON_SCORE=0.4506 POISSON_Pcnt=46 GSM=GSM669996 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60.bigWig shortLabel BMDMSC H3K36me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.194 Pcnt=35) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,155,100 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.194 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.146 FINDPEAKS_Pcnt=38 IROC_SCORE=0.9463 IROC_Pcnt=38 POISSON_SCORE=0.4134 POISSON_Pcnt=38 GSM=GSM669951 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K36me3_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K36me3_112.bigWig shortLabel BAC H3K36me3 12 longLabel Brain Anterior Caudate H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1756 Pcnt=23) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,148,100 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1756 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0894 FINDPEAKS_Pcnt=27 IROC_SCORE=0.9213 IROC_Pcnt=31 POISSON_SCORE=0.3426 POISSON_Pcnt=27 GSM=GSM670026 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K36me3_112t bigDataUrl BI_Brain_Cingulate_Gyrus_H3K36me3_112.bigWig shortLabel BCG H3K36me3 12 longLabel Brain Cingulate Gyrus H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1696 Pcnt=19) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,141,100 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1696 HOTSPOT_Pcnt=19 FINDPEAKS_SCORE=0.0807 FINDPEAKS_Pcnt=19 IROC_SCORE=0.9124 IROC_Pcnt=27 POISSON_SCORE=0.3265 POISSON_Pcnt=19 GSM=GSM669985 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K36me3_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K36me3_112.bigWig shortLabel BHM H3K36me3 12 longLabel Brain Hippocampus Middle H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=15) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,134,100 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1637 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0728 FINDPEAKS_Pcnt=15 IROC_SCORE=0.9114 IROC_Pcnt=23 POISSON_SCORE=0.302 POISSON_Pcnt=15 GSM=GSM670002 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K36me3_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K36me3_112.bigWig shortLabel BITL H3K36me3 12 longLabel Brain Inferior Temporal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1894 Pcnt=31) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,127,100 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1894 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.1086 FINDPEAKS_Pcnt=31 IROC_SCORE=0.9296 IROC_Pcnt=35 POISSON_SCORE=0.3414 POISSON_Pcnt=23 GSM=GSM670011 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K36me3_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K36me3_112.bigWig shortLabel BMFL H3K36me3 12 longLabel Brain Mid Frontal Lobe H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1489 Pcnt=12) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,120,100 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1489 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.0536 FINDPEAKS_Pcnt=12 IROC_SCORE=0.89 IROC_Pcnt=15 POISSON_SCORE=0.298 POISSON_Pcnt=12 GSM=GSM669982 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K36me3_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K36me3_112.bigWig shortLabel BSN H3K36me3 12 longLabel Brain Substantia Nigra H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1426 Pcnt=8) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,113,100 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1426 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.049 FINDPEAKS_Pcnt=8 IROC_SCORE=0.8812 IROC_Pcnt=12 POISSON_SCORE=0.2891 POISSON_Pcnt=8 GSM=GSM669947 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K36me3_123t bigDataUrl BI_CD34_Cultured_Cells_H3K36me3_123.bigWig shortLabel CD34 H3K36me3 23 longLabel CD34 Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3843 Pcnt=92) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,106,100 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3843 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.4564 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9961 IROC_Pcnt=92 POISSON_SCORE=0.605 POISSON_Pcnt=92 GSM=GSM669955 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_57.bigWig shortLabel CfBMDMSC H3K36me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3624 Pcnt=88) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,99,100 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3624 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.3933 FINDPEAKS_Pcnt=81 IROC_SCORE=0.9929 IROC_Pcnt=77 POISSON_SCORE=0.5575 POISSON_Pcnt=81 GSM=GSM670012 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_59.bigWig shortLabel CfBMDMSC H3K36me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3415 Pcnt=77) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,92,100 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3415 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.4005 FINDPEAKS_Pcnt=85 IROC_SCORE=0.992 IROC_Pcnt=73 POISSON_SCORE=0.5752 POISSON_Pcnt=85 GSM=GSM669914 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K36me3_60.bigWig shortLabel CfBMDMSC H3K36me3 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3514 Pcnt=85) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,85,100 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3514 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.4295 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9949 IROC_Pcnt=85 POISSON_SCORE=0.5925 POISSON_Pcnt=88 GSM=GSM669935 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K36me3_UW_H23284t bigDataUrl BI_Fetal_Lung_H3K36me3_UW_H23284.bigWig shortLabel FL H3K36me3 84 longLabel Fetal Lung H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=27) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,78,100 metadata sample_alias="UW DS # 14809" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.0876 FINDPEAKS_Pcnt=23 IROC_SCORE=0.9015 IROC_Pcnt=19 POISSON_SCORE=0.4148 POISSON_Pcnt=42 GSM=GSM669912 dateUnrestricted=2011-12-31 track BI_HUES48_H3K36me3t bigDataUrl BI_HUES48_H3K36me3.bigWig shortLabel HUES48 H3K36me3 e3 longLabel HUES48 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3122 Pcnt=58) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,71,100 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3122 HOTSPOT_Pcnt=58 FINDPEAKS_SCORE=0.3382 FINDPEAKS_Pcnt=65 IROC_SCORE=0.9913 IROC_Pcnt=69 POISSON_SCORE=0.4971 POISSON_Pcnt=54 GSM=GSM670039 dateUnrestricted=2011-12-31 track BI_HUES64_H3K36me3t bigDataUrl BI_HUES64_H3K36me3.bigWig shortLabel HUES64 H3K36me3 e3 longLabel HUES64 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3406 Pcnt=73) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,64,100 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3406 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.3832 FINDPEAKS_Pcnt=77 IROC_SCORE=0.9952 IROC_Pcnt=88 POISSON_SCORE=0.5288 POISSON_Pcnt=77 GSM=GSM669932 dateUnrestricted=2011-12-31 track BI_HUES6_H3K36me3_03t bigDataUrl BI_HUES6_H3K36me3_03.bigWig shortLabel HUES6 H3K36me3 longLabel HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3505 Pcnt=81) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,57,100 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3505 HOTSPOT_Pcnt=81 FINDPEAKS_SCORE=0.3749 FINDPEAKS_Pcnt=73 IROC_SCORE=0.9936 IROC_Pcnt=81 POISSON_SCORE=0.5284 POISSON_Pcnt=73 GSM=GSM669898 dateUnrestricted=2011-12-31 track BI_HUES6_H3K36me3_10t bigDataUrl BI_HUES6_H3K36me3_10.bigWig shortLabel HUES6 H3K36me3 longLabel HUES6 H3K36me3 Signal from REMC/Broad (Hotspot_Score=0.3184 Pcnt=62) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,50,100 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3184 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.3411 FINDPEAKS_Pcnt=69 IROC_SCORE=0.9897 IROC_Pcnt=58 POISSON_SCORE=0.5132 POISSON_Pcnt=69 GSM=GSM669892 dateUnrestricted=2011-12-31 track UCSD_H9_H3K36me3_SK278t bigDataUrl UCSD_H9_H3K36me3_SK278.bigWig shortLabel H9 H3K36me3 78 longLabel H9 H3K36me3 Signal from REMC/UCSD (Hotspot_Score=0.2786 Pcnt=46) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,43,100 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.2786 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.1237 FINDPEAKS_Pcnt=35 IROC_SCORE=0.8764 IROC_Pcnt=8 POISSON_SCORE=0.3951 POISSON_Pcnt=35 GSM=GSM667623 dateUnrestricted=2011-12-23 track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K36me3_RM080t bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K36me3_RM080.bigWig shortLabel BLEC H3K36me3 80 longLabel Breast Luminal Epithelial Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.2208 Pcnt=38) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,36,100 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=2.5ug size_fraction=81-316bp chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=134025 Hotspot_Score=0.2208 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.1946 FINDPEAKS_Pcnt=42 IROC_SCORE=0.9584 IROC_Pcnt=42 POISSON_SCORE=0.5045 POISSON_Pcnt=62 GSM=GSM669597 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_H3K36me3_TC001t bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_H3K36me3_TC001.bigWig shortLabel CD8N H3K36me3 01 longLabel CD8 Naive Primary Cells H3K36me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.1304 Pcnt=4) type bigWig 0 90000 parent containeredacc3H3K36me3 color 0,29,100 metadata sample_alias="CD8 Naive TC001" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=10ul size_fraction=81-272bp chip_antibody=H3K36me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9763S chip_antibody_lot=1 Hotspot_Score=0.1304 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0464 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8437 IROC_Pcnt=4 POISSON_SCORE=0.2639 POISSON_Pcnt=4 GSM=GSM669593 dateUnrestricted=2011-12-31 track containeredacc3H3K4me3 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K4me3 Summary longLabel Epigenome Atlas Release III H3K4me3 Summary for 24 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_H3K4me3_92t bigDataUrl BI_Adipose_Nuclei_H3K4me3_92.bigWig shortLabel AN H3K4me3 92 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4353 Pcnt=60) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,250,41 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4353 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.4303 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.4553 POISSON_Pcnt=56 GSM=GSM669925 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_93t bigDataUrl BI_Adipose_Nuclei_H3K4me3_93.bigWig shortLabel AN H3K4me3 93 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2851 Pcnt=36) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,240,41 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2851 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2537 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9996 IROC_Pcnt=64 POISSON_SCORE=0.3499 POISSON_Pcnt=36 GSM=GSM669998 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_94t bigDataUrl BI_Adipose_Nuclei_H3K4me3_94.bigWig shortLabel AN H3K4me3 94 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.3591 Pcnt=40) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,230,41 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3591 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.3095 FINDPEAKS_Pcnt=40 IROC_SCORE=0.981 IROC_Pcnt=12 POISSON_SCORE=0.4053 POISSON_Pcnt=48 GSM=GSM670041 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me3_95t bigDataUrl BI_Adipose_Nuclei_H3K4me3_95.bigWig shortLabel AN H3K4me3 95 longLabel Adipose Nuclei H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5141 Pcnt=68) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,220,41 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5141 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.503 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9959 IROC_Pcnt=36 POISSON_SCORE=0.5483 POISSON_Pcnt=68 GSM=GSM669988 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_58.bigWig shortLabel BMDMSC H3K4me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.461 Pcnt=64) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,210,41 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.461 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4313 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9927 IROC_Pcnt=20 POISSON_SCORE=0.4979 POISSON_Pcnt=64 GSM=GSM669924 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59.bigWig shortLabel BMDMSC H3K4me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4278 Pcnt=56) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,200,41 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4278 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.4171 FINDPEAKS_Pcnt=56 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.4435 POISSON_Pcnt=52 GSM=GSM669991 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60.bigWig shortLabel BMDMSC H3K4me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.4154 Pcnt=52) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,190,41 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4154 HOTSPOT_Pcnt=52 FINDPEAKS_SCORE=0.3889 FINDPEAKS_Pcnt=48 IROC_SCORE=0.9949 IROC_Pcnt=32 POISSON_SCORE=0.4568 POISSON_Pcnt=60 GSM=GSM670019 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K4me3_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K4me3_112.bigWig shortLabel BAC H3K4me3 12 longLabel Brain Anterior Caudate H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2409 Pcnt=28) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,180,41 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2409 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.2131 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.2842 POISSON_Pcnt=32 GSM=GSM670031 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K4me3_112t bigDataUrl BI_Brain_Cingulate_Gyrus_H3K4me3_112.bigWig shortLabel BCG H3K4me3 12 longLabel Brain Cingulate Gyrus H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2161 Pcnt=20) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,170,41 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2161 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.1888 FINDPEAKS_Pcnt=20 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.2513 POISSON_Pcnt=16 GSM=GSM669905 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K4me3_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K4me3_112.bigWig shortLabel BHM H3K4me3 12 longLabel Brain Hippocampus Middle H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1582 Pcnt=4) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,160,41 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1582 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.1271 FINDPEAKS_Pcnt=8 IROC_SCORE=0.999 IROC_Pcnt=60 POISSON_SCORE=0.1988 POISSON_Pcnt=4 GSM=GSM670022 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K4me3_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K4me3_112.bigWig shortLabel BITL H3K4me3 12 longLabel Brain Inferior Temporal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2304 Pcnt=24) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,150,41 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2304 HOTSPOT_Pcnt=24 FINDPEAKS_SCORE=0.2017 FINDPEAKS_Pcnt=24 IROC_SCORE=0.9998 IROC_Pcnt=88 POISSON_SCORE=0.2677 POISSON_Pcnt=20 GSM=GSM669992 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K4me3_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K4me3_112.bigWig shortLabel BMFL H3K4me3 12 longLabel Brain Mid Frontal Lobe H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2001 Pcnt=16) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,140,41 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2001 HOTSPOT_Pcnt=16 FINDPEAKS_SCORE=0.1774 FINDPEAKS_Pcnt=16 IROC_SCORE=0.9997 IROC_Pcnt=76 POISSON_SCORE=0.2343 POISSON_Pcnt=12 GSM=GSM670016 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K4me3_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K4me3_112.bigWig shortLabel BSN H3K4me3 12 longLabel Brain Substantia Nigra H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.1703 Pcnt=8) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,130,41 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1703 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.1289 FINDPEAKS_Pcnt=12 IROC_SCORE=0.9984 IROC_Pcnt=52 POISSON_SCORE=0.2145 POISSON_Pcnt=8 GSM=GSM670038 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K4me3_123t bigDataUrl BI_CD34_Cultured_Cells_H3K4me3_123.bigWig shortLabel CD34 H3K4me3 23 longLabel CD34 Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.2771 Pcnt=32) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,120,41 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2771 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.2682 FINDPEAKS_Pcnt=36 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.2788 POISSON_Pcnt=24 GSM=GSM669943 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_57.bigWig shortLabel CfBMDMSC H3K4me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5794 Pcnt=72) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,110,41 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5794 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.5671 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9927 IROC_Pcnt=20 POISSON_SCORE=0.6093 POISSON_Pcnt=72 GSM=GSM670004 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_59.bigWig shortLabel CfBMDMSC H3K4me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6121 Pcnt=84) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,100,41 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6121 HOTSPOT_Pcnt=84 FINDPEAKS_SCORE=0.6058 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9944 IROC_Pcnt=28 POISSON_SCORE=0.6309 POISSON_Pcnt=80 GSM=GSM670034 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me3_60.bigWig shortLabel CfBMDMSC H3K4me3 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6988 Pcnt=96) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,90,41 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6988 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.694 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9935 IROC_Pcnt=24 POISSON_SCORE=0.7011 POISSON_Pcnt=96 GSM=GSM669990 dateUnrestricted=2011-12-31 track BI_HUES48_H3K4me3t bigDataUrl BI_HUES48_H3K4me3.bigWig shortLabel HUES48 H3K4me3 e3 longLabel HUES48 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6495 Pcnt=88) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,80,41 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6495 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.654 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9984 IROC_Pcnt=52 POISSON_SCORE=0.6652 POISSON_Pcnt=88 GSM=GSM669936 dateUnrestricted=2011-12-31 track BI_HUES64_H3K4me3t bigDataUrl BI_HUES64_H3K4me3.bigWig shortLabel HUES64 H3K4me3 e3 longLabel HUES64 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.6513 Pcnt=92) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,70,41 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6513 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.6568 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9983 IROC_Pcnt=44 POISSON_SCORE=0.6758 POISSON_Pcnt=92 GSM=GSM669967 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me3_02t bigDataUrl BI_HUES6_H3K4me3_02.bigWig shortLabel HUES6 H3K4me3 longLabel HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.611 Pcnt=80) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,60,41 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.611 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.6124 FINDPEAKS_Pcnt=84 IROC_SCORE=0.9982 IROC_Pcnt=40 POISSON_SCORE=0.631 POISSON_Pcnt=84 GSM=GSM669889 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me3_09t bigDataUrl BI_HUES6_H3K4me3_09.bigWig shortLabel HUES6 H3K4me3 longLabel HUES6 H3K4me3 Signal from REMC/Broad (Hotspot_Score=0.5944 Pcnt=76) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,50,41 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.5944 HOTSPOT_Pcnt=76 FINDPEAKS_SCORE=0.59 FINDPEAKS_Pcnt=76 IROC_SCORE=0.9987 IROC_Pcnt=56 POISSON_SCORE=0.6174 POISSON_Pcnt=76 donorID=GSM669893 dateUnrestricted=2011-12-31 track UCSD_H9_H3K4me3_AK39t bigDataUrl UCSD_H9_H3K4me3_AK39.bigWig shortLabel H9 H3K4me3 39 longLabel H9 H3K4me3 Signal from REMC/UCSD (Hotspot_Score=0.4015 Pcnt=48) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,40,41 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=NG1643014 Hotspot_Score=0.4015 HOTSPOT_Pcnt=48 FINDPEAKS_SCORE=0.3245 FINDPEAKS_Pcnt=44 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.3959 POISSON_Pcnt=40 GSM=GSM616128 dateUnrestricted=2011-12-23 track UCSFUBC_Fetal_Brain_H3K4me3_HuFNSCTt bigDataUrl UCSFUBC_Fetal_Brain_H3K4me3_HuFNSCT.bigWig shortLabel FB H3K4me3 T longLabel Fetal Brain H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4014 Pcnt=44) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,30,41 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=54-343bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.4014 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.3981 FINDPEAKS_Pcnt=52 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.4014 POISSON_Pcnt=44 GSM=GSM669624 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me3_skin01t bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me3_skin01.bigWig shortLabel PFK H3K4me3 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K4me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.7346 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K4me3 color 0,20,41 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=147-408bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=2 Hotspot_Score=0.7346 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.731 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9748 IROC_Pcnt=8 POISSON_SCORE=0.7583 POISSON_Pcnt=100 GSM=GSM669589 dateUnrestricted=2011-12-31 track containeredacc3Input container multiWig superTrack edacc3ContainerbyExperiment shortLabel Input Summary longLabel Epigenome Atlas Release III Input Summary for 30 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_Input_92t bigDataUrl BI_Adipose_Nuclei_Input_92.bigWig shortLabel AN Input 92 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17) type bigWig 0 90000 parent containeredacc3Input color 0,250,250 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 HOTSPOT_Pcnt=17 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0248 POISSON_Pcnt=7 GSM=GSM669934 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_93t bigDataUrl BI_Adipose_Nuclei_Input_93.bigWig shortLabel AN Input 93 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.015 Pcnt=57) type bigWig 0 90000 parent containeredacc3Input color 0,250,242 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.015 HOTSPOT_Pcnt=57 FINDPEAKS_SCORE=0.0072 FINDPEAKS_Pcnt=77 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0531 POISSON_Pcnt=47 GSM=GSM670043 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_94t bigDataUrl BI_Adipose_Nuclei_Input_94.bigWig shortLabel AN Input 94 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.0096 Pcnt=40) type bigWig 0 90000 parent containeredacc3Input color 0,250,234 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0096 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0071 FINDPEAKS_Pcnt=73 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0413 POISSON_Pcnt=37 GSM=GSM669940 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_Input_95t bigDataUrl BI_Adipose_Nuclei_Input_95.bigWig shortLabel AN Input 95 longLabel Adipose Nuclei Input Signal from REMC/Broad (Hotspot_Score=0.005 Pcnt=23) type bigWig 0 90000 parent containeredacc3Input color 0,250,226 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.005 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0064 FINDPEAKS_Pcnt=40 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0274 POISSON_Pcnt=20 GSM=GSM669984 dateUnrestricted=2011-12-31 track BI_Adult_Liver_Input_3t bigDataUrl BI_Adult_Liver_Input_3.bigWig shortLabel AL Input 3 longLabel Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0183 Pcnt=67) type bigWig 0 90000 parent containeredacc3Input color 0,250,218 metadata sample_alias=3 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=3 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0183 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0553 POISSON_Pcnt=53 GSM=GSM670008 dateUnrestricted=2011-12-31 track BI_Adult_Liver_Input_5t bigDataUrl BI_Adult_Liver_Input_5.bigWig shortLabel AL Input 5 longLabel Adult Liver Input Signal from REMC/Broad (Hotspot_Score=0.0242 Pcnt=73) type bigWig 0 90000 parent containeredacc3Input color 0,250,210 metadata sample_alias=5 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=5 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0242 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.0073 FINDPEAKS_Pcnt=80 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0655 POISSON_Pcnt=70 GSM=GSM669910 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_57t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_57.bigWig shortLabel BMDMSC Input 57 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0145 Pcnt=53) type bigWig 0 90000 parent containeredacc3Input color 0,250,202 metadata sample_alias=76A sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0145 HOTSPOT_Pcnt=53 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=13 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0611 POISSON_Pcnt=60 GSM=GSM669946 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_58.bigWig shortLabel BMDMSC Input 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0166 Pcnt=63) type bigWig 0 90000 parent containeredacc3Input color 0,250,194 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0166 HOTSPOT_Pcnt=63 FINDPEAKS_SCORE=0.0059 FINDPEAKS_Pcnt=23 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.064 POISSON_Pcnt=67 GSM=GSM669958 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_59.bigWig shortLabel BMDMSC Input 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0142 Pcnt=50) type bigWig 0 90000 parent containeredacc3Input color 0,250,186 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0142 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0061 FINDPEAKS_Pcnt=30 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0614 POISSON_Pcnt=63 GSM=GSM669987 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_Input_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_Input_60.bigWig shortLabel BMDMSC Input 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0098 Pcnt=43) type bigWig 0 90000 parent containeredacc3Input color 0,250,178 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0098 HOTSPOT_Pcnt=43 FINDPEAKS_SCORE=0.0059 FINDPEAKS_Pcnt=23 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0535 POISSON_Pcnt=50 GSM=GSM670006 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_Input_112t bigDataUrl BI_Brain_Anterior_Caudate_Input_112.bigWig shortLabel BAC Input 12 longLabel Brain Anterior Caudate Input Signal from REMC/Broad (Hotspot_Score=0.0065 Pcnt=33) type bigWig 0 90000 parent containeredacc3Input color 0,250,170 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0065 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.0071 FINDPEAKS_Pcnt=73 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0298 POISSON_Pcnt=27 GSM=GSM669978 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_Input_112t bigDataUrl BI_Brain_Cingulate_Gyrus_Input_112.bigWig shortLabel BCG Input 12 longLabel Brain Cingulate Gyrus Input Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=17) type bigWig 0 90000 parent containeredacc3Input color 0,250,162 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 HOTSPOT_Pcnt=17 FINDPEAKS_SCORE=0.0066 FINDPEAKS_Pcnt=43 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0263 POISSON_Pcnt=17 GSM=GSM670003 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_Input_112t bigDataUrl BI_Brain_Hippocampus_Middle_Input_112.bigWig shortLabel BHM Input 12 longLabel Brain Hippocampus Middle Input Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=20) type bigWig 0 90000 parent containeredacc3Input color 0,250,154 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0047 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0062 FINDPEAKS_Pcnt=33 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0249 POISSON_Pcnt=13 GSM=GSM669971 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_Input_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_Input_112.bigWig shortLabel BITL Input 12 longLabel Brain Inferior Temporal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0095 Pcnt=37) type bigWig 0 90000 parent containeredacc3Input color 0,250,146 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0095 HOTSPOT_Pcnt=37 FINDPEAKS_SCORE=0.007 FINDPEAKS_Pcnt=67 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0361 POISSON_Pcnt=33 GSM=GSM670010 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_Input_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_Input_112.bigWig shortLabel BMFL Input 12 longLabel Brain Mid Frontal Lobe Input Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=7) type bigWig 0 90000 parent containeredacc3Input color 0,250,138 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0042 HOTSPOT_Pcnt=7 FINDPEAKS_SCORE=0.0064 FINDPEAKS_Pcnt=40 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0232 POISSON_Pcnt=3 GSM=GSM669960 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_Input_112t bigDataUrl BI_Brain_Substantia_Nigra_Input_112.bigWig shortLabel BSN Input 12 longLabel Brain Substantia Nigra Input Signal from REMC/Broad (Hotspot_Score=0.0045 Pcnt=10) type bigWig 0 90000 parent containeredacc3Input color 0,250,130 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0045 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0058 FINDPEAKS_Pcnt=17 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0249 POISSON_Pcnt=13 GSM=GSM670042 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_Input_123t bigDataUrl BI_CD34_Cultured_Cells_Input_123.bigWig shortLabel CD34 Input 23 longLabel CD34 Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0273 Pcnt=80) type bigWig 0 90000 parent containeredacc3Input color 0,250,122 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0273 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9752 IROC_Pcnt=52 POISSON_SCORE=0.0705 POISSON_Pcnt=73 GSM=GSM669929 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_58t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_58.bigWig shortLabel CfBMDMSC Input 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0151 Pcnt=60) type bigWig 0 90000 parent containeredacc3Input color 0,250,114 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0151 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.0069 FINDPEAKS_Pcnt=60 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.059 POISSON_Pcnt=57 GSM=GSM670029 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_Input_59.bigWig shortLabel CfBMDMSC Input 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Input Signal from REMC/Broad (Hotspot_Score=0.0129 Pcnt=47) type bigWig 0 90000 parent containeredacc3Input color 0,250,106 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0129 HOTSPOT_Pcnt=47 FINDPEAKS_SCORE=0.0067 FINDPEAKS_Pcnt=53 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0519 POISSON_Pcnt=43 GSM=GSM670044 dateUnrestricted=2011-12-31 track BI_Fetal_Brain_Input_UW_H23284t bigDataUrl BI_Fetal_Brain_Input_UW_H23284.bigWig shortLabel FB Input 84 longLabel Fetal Brain Input Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=3) type bigWig 0 90000 parent containeredacc3Input color 0,250,98 metadata sample_alias="UW DS # 14803" sample_common_name="Fetal Brain" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0 HOTSPOT_Pcnt=3 FINDPEAKS_SCORE=0.0028 FINDPEAKS_Pcnt=3 IROC_SCORE=0.8899 IROC_Pcnt=45 POISSON_SCORE=0.0865 POISSON_Pcnt=80 GSM=GSM669944 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_Input_UW_H23266t bigDataUrl BI_Fetal_Lung_Input_UW_H23266.bigWig shortLabel FL Input 66 longLabel Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=30) type bigWig 0 90000 parent containeredacc3Input color 0,250,90 metadata sample_alias="UW DS # 14751" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.007 FINDPEAKS_Pcnt=67 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0309 POISSON_Pcnt=30 GSM=GSM669956 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_Input_UW_H23284t bigDataUrl BI_Fetal_Lung_Input_UW_H23284.bigWig shortLabel FL Input 84 longLabel Fetal Lung Input Signal from REMC/Broad (Hotspot_Score=0.0054 Pcnt=27) type bigWig 0 90000 parent containeredacc3Input color 0,250,82 metadata sample_alias="UW DS # 14809" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23284" biomaterial_provider=UW donor_age="96 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0054 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.006 FINDPEAKS_Pcnt=27 IROC_SCORE=1.0 IROC_Pcnt=100 POISSON_SCORE=0.0298 POISSON_Pcnt=27 GSM=GSM669993 dateUnrestricted=2011-12-31 track BI_HUES6_Input_07t bigDataUrl BI_HUES6_Input_07.bigWig shortLabel HUES6 Input longLabel HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0197 Pcnt=70) type bigWig 0 90000 parent containeredacc3Input color 0,250,74 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.0197 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=13 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0507 POISSON_Pcnt=40 GSM=GSM669888 dateUnrestricted=2011-12-31 track BI_HUES6_Input_14t bigDataUrl BI_HUES6_Input_14.bigWig shortLabel HUES6 Input longLabel HUES6 Input Signal from REMC/Broad (Hotspot_Score=0.0299 Pcnt=83) type bigWig 0 90000 parent containeredacc3Input color 0,250,66 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.0299 HOTSPOT_Pcnt=83 FINDPEAKS_SCORE=0.0053 FINDPEAKS_Pcnt=7 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.0756 POISSON_Pcnt=77 GSM=GSM669895 dateUnrestricted=2011-12-31 track BI_Skeletal_Muscle_Input_63t bigDataUrl BI_Skeletal_Muscle_Input_63.bigWig shortLabel SM Input 63 longLabel Skeletal Muscle Input Signal from REMC/Broad (Hotspot_Score=0.027 Pcnt=77) type bigWig 0 90000 parent containeredacc3Input color 0,250,58 metadata sample_alias=85 sample_common_name="Skeletal Muscle" collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.027 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.0082 FINDPEAKS_Pcnt=87 IROC_SCORE=0.9805 IROC_Pcnt=55 POISSON_SCORE=0.093 POISSON_Pcnt=83 GSM=GSM669948 dateUnrestricted=2011-12-31 track BI_ESWA7_Inputt bigDataUrl BI_ESWA7_Input.bigWig shortLabel ESWA7 Input CE longLabel Input Lib MC 20100211 05--ChIP MC 20100208 Signal from REMC/Broad_ES-WA7 type bigWig 0 90000 parent containeredacc3Input color 0,250,50 metadata sample_alias=57 sample_common_name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=WA07-1 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM669926 dateUnrestricted=2011-12-31 track BI_CD34_Primary_Cells_Input_UW_RO_01492t bigDataUrl BI_CD34_Primary_Cells_Input_UW_RO_01492.bigWig shortLabel CD34 Input 92 longLabel CD34 Primary Cells Input UW RO Signal from REMC/Broad (Hotspot_Score=0.0497 Pcnt=87) type bigWig 0 90000 parent containeredacc3Input color 0,250,42 metadata sample_alias="UW DS # 12774" sample_common_name="Mobilized CD34 Primary Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Male biomaterial_type="Primary Cell" donor_id="UW RO 01492" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0497 HOTSPOT_Pcnt=87 FINDPEAKS_SCORE=0.0083 FINDPEAKS_Pcnt=90 IROC_SCORE=0.0 IROC_Pcnt=38 POISSON_SCORE=0.1196 POISSON_Pcnt=90 GSM=GSM669961 dateUnrestricted=2011-12-31 track UCSD_H1_Input_AK57t bigDataUrl UCSD_H1_Input_AK57.bigWig shortLabel H1 Input 57 longLabel H1 Input Signal from REMC/UCSD (Hotspot_Score=0.0846 Pcnt=93) type bigWig 0 90000 parent containeredacc3Input color 0,250,34 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0846 HOTSPOT_Pcnt=93 FINDPEAKS_SCORE=0.0078 FINDPEAKS_Pcnt=83 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1786 POISSON_Pcnt=93 GSM=GSM667642 dateUnrestricted=2011-12-23 track UCSD_H1_Input_YL328t bigDataUrl UCSD_H1_Input_YL328.bigWig shortLabel H1 Input 28 longLabel H1 Input Signal from REMC/UCSD (Hotspot_Score=0.2124 Pcnt=97) type bigWig 0 90000 parent containeredacc3Input color 0,250,26 metadata sample_alias=H1-11 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=33 medium=mTeSER Sex=Male batch=H1J5p33 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2124 HOTSPOT_Pcnt=97 FINDPEAKS_SCORE=0.0733 FINDPEAKS_Pcnt=97 IROC_SCORE=0.7472 IROC_Pcnt=41 POISSON_SCORE=0.2707 POISSON_Pcnt=97 GSM=GSM667641 dateUnrestricted=2011-11-15 track UCSD_H9_Input_SKH9_4t bigDataUrl UCSD_H9_Input_SKH9_4.bigWig shortLabel H9 Input 4 longLabel H9 Input SKH9-Signal from REMC/UCSD (Hotspot_Score=0.0778 Pcnt=90) type bigWig 0 90000 parent containeredacc3Input color 0,250,18 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0778 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.0124 FINDPEAKS_Pcnt=93 IROC_SCORE=0.9959 IROC_Pcnt=59 POISSON_SCORE=0.0966 POISSON_Pcnt=87 GSM=GSM667643 dateUnrestricted=2011-12-23 track containeredacc3H2BK5ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H2BK5ac Summary longLabel Epigenome Atlas Release III H2BK5ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H2BK5ac_AK29t bigDataUrl UCSD_H9_H2BK5ac_AK29.bigWig shortLabel H9 H2BK5ac 29 longLabel H9 H2BK5ac Signal from REMC/UCSD (Hotspot_Score=0.0367 Pcnt=50) type bigWig 0 90000 parent containeredacc3H2BK5ac color 194,97,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider="Active Motif" chip_antibody_catalog=39123 chip_antibody_lot=229 Hotspot_Score=0.0367 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0072 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=50 POISSON_SCORE=0.1114 POISSON_Pcnt=50 GSM=GSM667613 dateUnrestricted=2011-12-23 track UCSD_H9_H2BK5ac_YL244t bigDataUrl UCSD_H9_H2BK5ac_YL244.bigWig shortLabel H9 H2BK5ac 44 longLabel H9 H2BK5ac Signal from REMC/UCSD (Hotspot_Score=0.1227 Pcnt=100) type bigWig 0 90000 parent containeredacc3H2BK5ac color 102,97,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40886 chip_antibody_lot=529107 Hotspot_Score=0.1227 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0211 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6287 IROC_Pcnt=100 POISSON_SCORE=0.2312 POISSON_Pcnt=100 GSM=GSM667612 dateUnrestricted=2011-11-15 track containeredacc3H3K9me3 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K9me3 Summary longLabel Epigenome Atlas Release III H3K9me3 Summary for 26 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_H3K9me3_92t bigDataUrl BI_Adipose_Nuclei_H3K9me3_92.bigWig shortLabel AN H3K9me3 92 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1619 Pcnt=69) type bigWig 0 90000 parent containeredacc3H3K9me3 color 255,215,0 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1619 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.1001 FINDPEAKS_Pcnt=73 IROC_SCORE=0.8983 IROC_Pcnt=73 POISSON_SCORE=0.3042 POISSON_Pcnt=46 GSM=GSM669968 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_93t bigDataUrl BI_Adipose_Nuclei_H3K9me3_93.bigWig shortLabel AN H3K9me3 93 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1605 Pcnt=65) type bigWig 0 90000 parent containeredacc3H3K9me3 color 246,215,0 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1605 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.0997 FINDPEAKS_Pcnt=69 IROC_SCORE=0.8735 IROC_Pcnt=62 POISSON_SCORE=0.3322 POISSON_Pcnt=58 GSM=GSM669981 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_94t bigDataUrl BI_Adipose_Nuclei_H3K9me3_94.bigWig shortLabel AN H3K9me3 94 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1991 Pcnt=77) type bigWig 0 90000 parent containeredacc3H3K9me3 color 237,215,0 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1991 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.1377 FINDPEAKS_Pcnt=77 IROC_SCORE=0.8998 IROC_Pcnt=77 POISSON_SCORE=0.3728 POISSON_Pcnt=77 GSM=GSM669976 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9me3_95t bigDataUrl BI_Adipose_Nuclei_H3K9me3_95.bigWig shortLabel AN H3K9me3 95 longLabel Adipose Nuclei H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.2458 Pcnt=96) type bigWig 0 90000 parent containeredacc3H3K9me3 color 228,215,0 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2458 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.1924 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9244 IROC_Pcnt=88 POISSON_SCORE=0.4211 POISSON_Pcnt=88 GSM=GSM669933 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K9me3_4t bigDataUrl BI_Adult_Liver_H3K9me3_4.bigWig shortLabel AL H3K9me3 4 longLabel Adult Liver H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1457 Pcnt=54) type bigWig 0 90000 parent containeredacc3H3K9me3 color 219,215,0 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1457 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.0918 FINDPEAKS_Pcnt=62 IROC_SCORE=0.8709 IROC_Pcnt=50 POISSON_SCORE=0.3566 POISSON_Pcnt=73 GSM=GSM669986 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58.bigWig shortLabel BMDMSC H3K9me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0916 Pcnt=35) type bigWig 0 90000 parent containeredacc3H3K9me3 color 210,215,0 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0916 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.0384 FINDPEAKS_Pcnt=35 IROC_SCORE=0.7202 IROC_Pcnt=15 POISSON_SCORE=0.2831 POISSON_Pcnt=42 GSM=GSM670018 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59.bigWig shortLabel BMDMSC H3K9me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0432 Pcnt=4) type bigWig 0 90000 parent containeredacc3H3K9me3 color 201,215,0 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0432 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0183 FINDPEAKS_Pcnt=8 IROC_SCORE=0.9439 IROC_Pcnt=92 POISSON_SCORE=0.124 POISSON_Pcnt=4 GSM=GSM669989 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9me3_60.bigWig shortLabel BMDMSC H3K9me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0559 Pcnt=12) type bigWig 0 90000 parent containeredacc3H3K9me3 color 192,215,0 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0559 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.0221 FINDPEAKS_Pcnt=27 IROC_SCORE=0.878 IROC_Pcnt=65 POISSON_SCORE=0.2031 POISSON_Pcnt=27 GSM=GSM670028 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K9me3_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K9me3_112.bigWig shortLabel BAC H3K9me3 12 longLabel Brain Anterior Caudate H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0818 Pcnt=31) type bigWig 0 90000 parent containeredacc3H3K9me3 color 183,215,0 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0818 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.0254 FINDPEAKS_Pcnt=31 IROC_SCORE=0.8004 IROC_Pcnt=31 POISSON_SCORE=0.2092 POISSON_Pcnt=31 GSM=GSM669994 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K9me3_112t bigDataUrl BI_Brain_Cingulate_Gyrus_H3K9me3_112.bigWig shortLabel BCG H3K9me3 12 longLabel Brain Cingulate Gyrus H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0627 Pcnt=19) type bigWig 0 90000 parent containeredacc3H3K9me3 color 174,215,0 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0627 HOTSPOT_Pcnt=19 FINDPEAKS_SCORE=0.0197 FINDPEAKS_Pcnt=15 IROC_SCORE=0.8419 IROC_Pcnt=42 POISSON_SCORE=0.1598 POISSON_Pcnt=15 GSM=GSM669923 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K9me3_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K9me3_112.bigWig shortLabel BHM H3K9me3 12 longLabel Brain Hippocampus Middle H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.053 Pcnt=8) type bigWig 0 90000 parent containeredacc3H3K9me3 color 165,215,0 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.053 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.016 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8792 IROC_Pcnt=69 POISSON_SCORE=0.1304 POISSON_Pcnt=8 GSM=GSM670001 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K9me3_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K9me3_112.bigWig shortLabel BITL H3K9me3 12 longLabel Brain Inferior Temporal Lobe H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0816 Pcnt=27) type bigWig 0 90000 parent containeredacc3H3K9me3 color 156,215,0 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0816 HOTSPOT_Pcnt=27 FINDPEAKS_SCORE=0.0198 FINDPEAKS_Pcnt=19 IROC_SCORE=0.7569 IROC_Pcnt=23 POISSON_SCORE=0.1716 POISSON_Pcnt=23 GSM=GSM670005 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K9me3_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K9me3_112.bigWig shortLabel BMFL H3K9me3 12 longLabel Brain Mid Frontal Lobe H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0675 Pcnt=23) type bigWig 0 90000 parent containeredacc3H3K9me3 color 147,215,0 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0675 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.0209 FINDPEAKS_Pcnt=23 IROC_SCORE=0.8191 IROC_Pcnt=38 POISSON_SCORE=0.1686 POISSON_Pcnt=19 GSM=GSM669965 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K9me3_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K9me3_112.bigWig shortLabel BSN H3K9me3 12 longLabel Brain Substantia Nigra H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.0589 Pcnt=15) type bigWig 0 90000 parent containeredacc3H3K9me3 color 138,215,0 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0589 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0186 FINDPEAKS_Pcnt=12 IROC_SCORE=0.8724 IROC_Pcnt=54 POISSON_SCORE=0.1508 POISSON_Pcnt=12 GSM=GSM669973 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K9me3_123t bigDataUrl BI_CD34_Cultured_Cells_H3K9me3_123.bigWig shortLabel CD34 H3K9me3 23 longLabel CD34 Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1571 Pcnt=62) type bigWig 0 90000 parent containeredacc3H3K9me3 color 129,215,0 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1571 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.0898 FINDPEAKS_Pcnt=58 IROC_SCORE=0.8668 IROC_Pcnt=46 POISSON_SCORE=0.2739 POISSON_Pcnt=35 GSM=GSM669995 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_57.bigWig shortLabel CfBMDMSC H3K9me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1124 Pcnt=42) type bigWig 0 90000 parent containeredacc3H3K9me3 color 120,215,0 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1124 HOTSPOT_Pcnt=42 FINDPEAKS_SCORE=0.0433 FINDPEAKS_Pcnt=46 IROC_SCORE=0.6884 IROC_Pcnt=4 POISSON_SCORE=0.306 POISSON_Pcnt=50 GSM=GSM670040 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_58.bigWig shortLabel CfBMDMSC H3K9me3 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1024 Pcnt=38) type bigWig 0 90000 parent containeredacc3H3K9me3 color 111,215,0 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1024 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.0408 FINDPEAKS_Pcnt=42 IROC_SCORE=0.7108 IROC_Pcnt=8 POISSON_SCORE=0.282 POISSON_Pcnt=38 GSM=GSM669919 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9me3_59.bigWig shortLabel CfBMDMSC H3K9me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1132 Pcnt=46) type bigWig 0 90000 parent containeredacc3H3K9me3 color 102,215,0 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1132 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.0457 FINDPEAKS_Pcnt=50 IROC_SCORE=0.7126 IROC_Pcnt=12 POISSON_SCORE=0.3397 POISSON_Pcnt=65 GSM=GSM670023 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K9me3_UW_H23266t bigDataUrl BI_Fetal_Lung_H3K9me3_UW_H23266.bigWig shortLabel FL H3K9me3 66 longLabel Fetal Lung H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.1397 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K9me3 color 93,215,0 metadata sample_alias="UW DS # 14751" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1397 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.067 FINDPEAKS_Pcnt=54 IROC_SCORE=0.799 IROC_Pcnt=27 POISSON_SCORE=0.3137 POISSON_Pcnt=54 GSM=GSM669939 dateUnrestricted=2011-12-31 track BI_HUES64_H3K9me3t bigDataUrl BI_HUES64_H3K9me3.bigWig shortLabel HUES64 H3K9me3 e3 longLabel HUES64 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.241 Pcnt=92) type bigWig 0 90000 parent containeredacc3H3K9me3 color 84,215,0 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.241 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.2897 FINDPEAKS_Pcnt=96 IROC_SCORE=0.969 IROC_Pcnt=100 POISSON_SCORE=0.4338 POISSON_Pcnt=96 GSM=GSM669928 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9me3_06t bigDataUrl BI_HUES6_H3K9me3_06.bigWig shortLabel HUES6 H3K9me3 longLabel HUES6 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.3148 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K9me3 color 75,215,0 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3148 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.3213 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9673 IROC_Pcnt=96 POISSON_SCORE=0.4871 POISSON_Pcnt=100 GSM=GSM669886 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9me3_13t bigDataUrl BI_HUES6_H3K9me3_13.bigWig shortLabel HUES6 H3K9me3 longLabel HUES6 H3K9me3 Signal from REMC/Broad (Hotspot_Score=0.2368 Pcnt=88) type bigWig 0 90000 parent containeredacc3H3K9me3 color 66,215,0 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.2368 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.1628 FINDPEAKS_Pcnt=81 IROC_SCORE=0.912 IROC_Pcnt=81 POISSON_SCORE=0.4292 POISSON_Pcnt=92 GSM=GSM669894 dateUnrestricted=2011-12-31 track UCSD_H9_H3K9me3_AK40t bigDataUrl UCSD_H9_H3K9me3_AK40.bigWig shortLabel H9 H3K9me3 40 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.1465 Pcnt=58) type bigWig 0 90000 parent containeredacc3H3K9me3 color 57,215,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.1465 HOTSPOT_Pcnt=58 FINDPEAKS_SCORE=0.0402 FINDPEAKS_Pcnt=38 IROC_SCORE=0.7488 IROC_Pcnt=19 POISSON_SCORE=0.3359 POISSON_Pcnt=62 GSM=GSM667633 dateUnrestricted=2011-12-23 track UCSD_H9_H3K9me3_SK100t bigDataUrl UCSD_H9_H3K9me3_SK100.bigWig shortLabel H9 H3K9me3 00 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.2196 Pcnt=81) type bigWig 0 90000 parent containeredacc3H3K9me3 color 48,215,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.2196 HOTSPOT_Pcnt=81 FINDPEAKS_SCORE=0.1683 FINDPEAKS_Pcnt=85 IROC_SCORE=0.873 IROC_Pcnt=58 POISSON_SCORE=0.4039 POISSON_Pcnt=85 GSM=GSM667631 dateUnrestricted=2011-11-15 track UCSD_H9_H3K9me3_SK200t bigDataUrl UCSD_H9_H3K9me3_SK200.bigWig shortLabel H9 H3K9me3 01 longLabel H9 H3K9me3 Signal from REMC/UCSD (Hotspot_Score=0.2266 Pcnt=85) type bigWig 0 90000 parent containeredacc3H3K9me3 color 39,215,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.2266 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.192 FINDPEAKS_Pcnt=88 IROC_SCORE=0.917 IROC_Pcnt=85 POISSON_SCORE=0.3564 POISSON_Pcnt=69 GSM=GSM667632 dateUnrestricted=2011-11-15 track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K9me3_RM080t bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K9me3_RM080.bigWig shortLabel BLEC H3K9me3 80 longLabel Breast Luminal Epithelial Cells H3K9me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.1878 Pcnt=73) type bigWig 0 90000 parent containeredacc3H3K9me3 color 30,215,0 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=81-301bp chip_antibody=H3K9me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb056050 chip_antibody_lot=A930042 Hotspot_Score=0.1878 HOTSPOT_Pcnt=73 FINDPEAKS_SCORE=0.0984 FINDPEAKS_Pcnt=65 IROC_SCORE=0.816 IROC_Pcnt=35 POISSON_SCORE=0.3925 POISSON_Pcnt=81 GSM=GSM669596 dateUnrestricted=2011-12-31 track containeredacc3DNase container multiWig superTrack edacc3ContainerbyExperiment shortLabel DNase Summary longLabel Epigenome Atlas Release III DNase Summary for 39 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UW_CD3_Primary_Cells_ChromatinAccessibility_RO01721_DS17198t bigDataUrl UW_CD3_Primary_Cells_ChromatinAccessibility_RO01721_DS17198.bigWig shortLabel CD3 DNase 21 98 longLabel CD3 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4876 Pcnt=82) type bigWig 0 90000 parent containeredacc3DNase color 0,255,100 metadata sample_alias=CD3.RO_01721 sample_common_name="CD3 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4876 HOTSPOT_Pcnt=82 FINDPEAKS_SCORE=0.4798 FINDPEAKS_Pcnt=82 IROC_SCORE=0.9973 IROC_Pcnt=95 POISSON_SCORE=0.4584 POISSON_Pcnt=54 GSM=GSM665837 dateUnrestricted=2011-11-02 track UW_CD4_Primary_Cells_ChromatinAccessibility_RO01670_DS15947t bigDataUrl UW_CD4_Primary_Cells_ChromatinAccessibility_RO01670_DS15947.bigWig shortLabel CD4 DNase 70 47 longLabel CD4 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.356 Pcnt=44) type bigWig 0 90000 parent containeredacc3DNase color 0,249,100 metadata sample_alias=CD4.RO_01670 sample_common_name="CD4 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD4 Primary Cells" markers=CD4+ donor_id="RO 01670" donor_age="year 33" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.356 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.335 FINDPEAKS_Pcnt=38 IROC_SCORE=0.9937 IROC_Pcnt=46 POISSON_SCORE=0.3675 POISSON_Pcnt=15 GSM=GSM665812 dateUnrestricted=2011-11-02 track UW_CD4_Primary_Cells_ChromatinAccessibility_RO01721_DS17212t bigDataUrl UW_CD4_Primary_Cells_ChromatinAccessibility_RO01721_DS17212.bigWig shortLabel CD4 DNase 21 12 longLabel CD4 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.489 Pcnt=85) type bigWig 0 90000 parent containeredacc3DNase color 0,243,100 metadata sample_alias=CD4.RO_01721 sample_common_name="CD4 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD4 Primary Cells" markers=CD4+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.489 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.4851 FINDPEAKS_Pcnt=85 IROC_SCORE=0.9946 IROC_Pcnt=59 POISSON_SCORE=0.4804 POISSON_Pcnt=59 GSM=GSM665839 dateUnrestricted=2011-11-02 track UW_CD56_Primary_Cells_ChromatinAccessibility_RO01721_DS17189t bigDataUrl UW_CD56_Primary_Cells_ChromatinAccessibility_RO01721_DS17189.bigWig shortLabel CD56 DNase 21 89 longLabel CD56 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6307 Pcnt=97) type bigWig 0 90000 parent containeredacc3DNase color 0,237,100 metadata sample_alias=CD56.RO_01721 sample_common_name="CD56 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD56 Primary Cells" markers=CD56+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.6307 HOTSPOT_Pcnt=97 FINDPEAKS_SCORE=0.6182 FINDPEAKS_Pcnt=95 IROC_SCORE=0.9975 IROC_Pcnt=97 POISSON_SCORE=0.5813 POISSON_Pcnt=87 GSM=GSM665836 dateUnrestricted=2011-11-02 track UW_CD8_Primary_Cells_ChromatinAccessibility_RO01670_DS16012t bigDataUrl UW_CD8_Primary_Cells_ChromatinAccessibility_RO01670_DS16012.bigWig shortLabel CD8 DNase 70 12 longLabel CD8 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2432 Pcnt=3) type bigWig 0 90000 parent containeredacc3DNase color 0,231,100 metadata sample_alias=CD8.RO_01670 sample_common_name="CD8 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD8 Primary Cells" markers=CD8+ donor_id="RO 01670" donor_age="year 33" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2432 HOTSPOT_Pcnt=3 FINDPEAKS_SCORE=0.2532 FINDPEAKS_Pcnt=10 IROC_SCORE=0.9927 IROC_Pcnt=31 POISSON_SCORE=0.3042 POISSON_Pcnt=3 GSM=GSM665813 dateUnrestricted=2011-11-02 track UW_CD8_Primary_Cells_ChromatinAccessibility_RO01721_DS17203t bigDataUrl UW_CD8_Primary_Cells_ChromatinAccessibility_RO01721_DS17203.bigWig shortLabel CD8 DNase 21 03 longLabel CD8 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6695 Pcnt=100) type bigWig 0 90000 parent containeredacc3DNase color 0,225,100 metadata sample_alias=CD8.RO_01721 sample_common_name="CD8 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD8 Primary Cells" markers=CD8+ donor_id="RO 01721" donor_age="year 21" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.6695 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6535 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9962 IROC_Pcnt=79 POISSON_SCORE=0.626 POISSON_Pcnt=95 GSM=GSM665838 dateUnrestricted=2011-11-02 track UW_Fetal_Brain_ChromatinAccessibility_H23399_DS15453t bigDataUrl UW_Fetal_Brain_ChromatinAccessibility_H23399_DS15453.bigWig shortLabel FB DNase 99 53 longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3261 Pcnt=31) type bigWig 0 90000 parent containeredacc3DNase color 0,219,100 metadata sample_alias=fBrain.H-23399d112 sample_common_name="Fetal Brain" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Brain" tissue_depot=UW collection_method=fetal donor_id=H-23399 donor_age="day 112" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3261 HOTSPOT_Pcnt=31 FINDPEAKS_SCORE=0.3342 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9913 IROC_Pcnt=23 POISSON_SCORE=0.4304 POISSON_Pcnt=41 GSM=GSM665804 dateUnrestricted=2011-11-02 track UW_Fetal_Brain_ChromatinAccessibility_H23548_DS16302t bigDataUrl UW_Fetal_Brain_ChromatinAccessibility_H23548_DS16302.bigWig shortLabel FB DNase 48 02 longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4057 Pcnt=62) type bigWig 0 90000 parent containeredacc3DNase color 0,213,100 metadata sample_alias=fBrain.H-23548d142 sample_common_name="Fetal Brain" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Brain" tissue_depot=UW collection_method=fetal donor_id=H-23548 donor_age="day 142" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4057 HOTSPOT_Pcnt=62 FINDPEAKS_SCORE=0.4211 FINDPEAKS_Pcnt=62 IROC_SCORE=0.9952 IROC_Pcnt=69 POISSON_SCORE=0.4854 POISSON_Pcnt=62 GSM=GSM665819 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23468_DS15839t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23468_DS15839.bigWig shortLabel FH DNase 68 39 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3943 Pcnt=54) type bigWig 0 90000 parent containeredacc3DNase color 0,207,100 metadata sample_alias=fHeart.H-23468d96 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23468 donor_age="day 96" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3943 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.3632 FINDPEAKS_Pcnt=44 IROC_SCORE=0.9934 IROC_Pcnt=44 POISSON_SCORE=0.4961 POISSON_Pcnt=72 GSM=GSM665811 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23500_DS16018t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23500_DS16018.bigWig shortLabel FH DNase 00 18 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.514 Pcnt=87) type bigWig 0 90000 parent containeredacc3DNase color 0,201,100 metadata sample_alias=fHeart.H-23500d103 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23500 donor_age="day 103" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.514 HOTSPOT_Pcnt=87 FINDPEAKS_SCORE=0.5109 FINDPEAKS_Pcnt=87 IROC_SCORE=0.9972 IROC_Pcnt=90 POISSON_SCORE=0.603 POISSON_Pcnt=92 GSM=GSM665814 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23524_DS16146t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23524_DS16146.bigWig shortLabel FH DNase 24 46 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4354 Pcnt=69) type bigWig 0 90000 parent containeredacc3DNase color 0,195,100 metadata sample_alias=fHeart.H-23524d105 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4354 HOTSPOT_Pcnt=69 FINDPEAKS_SCORE=0.4475 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9948 IROC_Pcnt=62 POISSON_SCORE=0.5059 POISSON_Pcnt=74 GSM=GSM665817 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23589_DS16500t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23589_DS16500.bigWig shortLabel FH DNase 89 00 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3977 Pcnt=56) type bigWig 0 90000 parent containeredacc3DNase color 0,189,100 metadata sample_alias=fHeart.H-23589d147 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3977 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.4152 FINDPEAKS_Pcnt=56 IROC_SCORE=0.9946 IROC_Pcnt=59 POISSON_SCORE=0.515 POISSON_Pcnt=79 GSM=GSM665824 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23604_DS16582t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23604_DS16582.bigWig shortLabel FH DNase 04 82 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5893 Pcnt=92) type bigWig 0 90000 parent containeredacc3DNase color 0,183,100 metadata sample_alias=fHeart.H-23604d110 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.5893 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.6087 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9965 IROC_Pcnt=85 POISSON_SCORE=0.6457 POISSON_Pcnt=100 GSM=GSM665830 dateUnrestricted=2011-11-02 track UW_Fetal_Heart_ChromatinAccessibility_H23617_DS16621t bigDataUrl UW_Fetal_Heart_ChromatinAccessibility_H23617_DS16621.bigWig shortLabel FH DNase 17 21 longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5164 Pcnt=90) type bigWig 0 90000 parent containeredacc3DNase color 0,177,100 metadata sample_alias=fHeart.H-23617d110 sample_common_name="Fetal Heart" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Heart" tissue_depot=UW collection_method=fetal donor_id=H-23617 donor_age="day 110" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.5164 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.5235 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9959 IROC_Pcnt=77 POISSON_SCORE=0.5904 POISSON_Pcnt=90 GSM=GSM665831 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23500_DS16027t bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23500_DS16027.bigWig shortLabel FIL DNase 00 27 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3019 Pcnt=18) type bigWig 0 90000 parent containeredacc3DNase color 0,171,100 metadata sample_alias=fIntestine_Large.H-23500d103 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23500 donor_age="day 103" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3019 HOTSPOT_Pcnt=18 FINDPEAKS_SCORE=0.2993 FINDPEAKS_Pcnt=21 IROC_SCORE=0.9912 IROC_Pcnt=21 POISSON_SCORE=0.3732 POISSON_Pcnt=21 GSM=GSM665815 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23524_DS16164t bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23524_DS16164.bigWig shortLabel FIL DNase 24 64 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4383 Pcnt=72) type bigWig 0 90000 parent containeredacc3DNase color 0,165,100 metadata sample_alias=fIntestine_Large.H-23524d105 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4383 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.4466 FINDPEAKS_Pcnt=69 IROC_SCORE=0.9973 IROC_Pcnt=95 POISSON_SCORE=0.4866 POISSON_Pcnt=64 GSM=GSM665818 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Large_ChromatinAccessibility_H23604_DS16563t bigDataUrl UW_Fetal_Intestine_Large_ChromatinAccessibility_H23604_DS16563.bigWig shortLabel FIL DNase 04 63 longLabel Fetal Intestine Large DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3485 Pcnt=38) type bigWig 0 90000 parent containeredacc3DNase color 0,159,100 metadata sample_alias=fIntestine_Large.H-23604d110 sample_common_name="Fetal Intestine, Large" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Large" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3485 HOTSPOT_Pcnt=38 FINDPEAKS_SCORE=0.3569 FINDPEAKS_Pcnt=41 IROC_SCORE=0.995 IROC_Pcnt=67 POISSON_SCORE=0.4078 POISSON_Pcnt=33 GSM=GSM665826 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Small_ChromatinAccessibility_H23604_DS16559t bigDataUrl UW_Fetal_Intestine_Small_ChromatinAccessibility_H23604_DS16559.bigWig shortLabel FIS DNase 04 59 longLabel Fetal Intestine Small DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3599 Pcnt=46) type bigWig 0 90000 parent containeredacc3DNase color 0,153,100 metadata sample_alias=fIntestine_Small.H-23604d110 sample_common_name="Fetal Intestine, Small" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Small" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3599 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.3725 FINDPEAKS_Pcnt=51 IROC_SCORE=0.9956 IROC_Pcnt=72 POISSON_SCORE=0.4353 POISSON_Pcnt=49 GSM=GSM665825 dateUnrestricted=2011-11-02 track UW_Fetal_Intestine_Small_ChromatinAccessibility_H23663_DS16822t bigDataUrl UW_Fetal_Intestine_Small_ChromatinAccessibility_H23663_DS16822.bigWig shortLabel FIS DNase 63 22 longLabel Fetal Intestine Small DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3638 Pcnt=49) type bigWig 0 90000 parent containeredacc3DNase color 0,147,100 metadata sample_alias=fIntestine_Small.H-23663d105 sample_common_name="Fetal Intestine, Small" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Intestine, Small" tissue_depot=UW collection_method=fetal donor_id=H-23663 donor_age="day 105" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3638 HOTSPOT_Pcnt=49 FINDPEAKS_SCORE=0.37 FINDPEAKS_Pcnt=49 IROC_SCORE=0.9957 IROC_Pcnt=74 POISSON_SCORE=0.4147 POISSON_Pcnt=36 GSM=GSM665835 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_ChromatinAccessibility_H23524_DS16139t bigDataUrl UW_Fetal_Kidney_ChromatinAccessibility_H23524_DS16139.bigWig shortLabel FK DNase 24 39 longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3424 Pcnt=36) type bigWig 0 90000 parent containeredacc3DNase color 0,141,100 metadata sample_alias=fKidney.H-23524d105 sample_common_name="Fetal Kidney" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney" tissue_depot=UW collection_method=fetal donor_id=H-23524 donor_age="day 105" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3424 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2999 FINDPEAKS_Pcnt=23 IROC_SCORE=0.9701 IROC_Pcnt=3 POISSON_SCORE=0.3977 POISSON_Pcnt=28 GSM=GSM665816 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23589_DS16446t bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23589_DS16446.bigWig shortLabel FKL DNase 89 46 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2565 Pcnt=5) type bigWig 0 90000 parent containeredacc3DNase color 0,135,100 metadata sample_alias=fKidney_Left.H-23589d147 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2565 HOTSPOT_Pcnt=5 FINDPEAKS_SCORE=0.2532 FINDPEAKS_Pcnt=10 IROC_SCORE=0.9857 IROC_Pcnt=5 POISSON_SCORE=0.3514 POISSON_Pcnt=10 GSM=GSM665822 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23604_DS16579t bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23604_DS16579.bigWig shortLabel FKL DNase 04 79 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.325 Pcnt=28) type bigWig 0 90000 parent containeredacc3DNase color 0,129,100 metadata sample_alias=fKidney_Left.H-23604d110 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.325 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.3242 FINDPEAKS_Pcnt=31 IROC_SCORE=0.9891 IROC_Pcnt=15 POISSON_SCORE=0.4351 POISSON_Pcnt=46 GSM=GSM665829 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Left_ChromatinAccessibility_H23640_DS16805t bigDataUrl UW_Fetal_Kidney_Left_ChromatinAccessibility_H23640_DS16805.bigWig shortLabel FKL DNase 40 05 longLabel Fetal Kidney Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.625 Pcnt=95) type bigWig 0 90000 parent containeredacc3DNase color 0,123,100 metadata sample_alias=fKidney_Left.H-23640d115 sample_common_name="Fetal Kidney, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Left" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.625 HOTSPOT_Pcnt=95 FINDPEAKS_SCORE=0.6266 FINDPEAKS_Pcnt=97 IROC_SCORE=0.9969 IROC_Pcnt=87 POISSON_SCORE=0.6388 POISSON_Pcnt=97 GSM=GSM665834 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23435_DS15651t bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23435_DS15651.bigWig shortLabel FKR DNase 35 51 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3156 Pcnt=23) type bigWig 0 90000 parent containeredacc3DNase color 0,117,100 metadata sample_alias=fKidney_Right.H-23435d117 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3156 HOTSPOT_Pcnt=23 FINDPEAKS_SCORE=0.3134 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9885 IROC_Pcnt=10 POISSON_SCORE=0.4195 POISSON_Pcnt=38 GSM=GSM665810 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23589_DS16441t bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23589_DS16441.bigWig shortLabel FKR DNase 89 41 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.317 Pcnt=26) type bigWig 0 90000 parent containeredacc3DNase color 0,111,100 metadata sample_alias=fKidney_Right.H-23589d147 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.317 HOTSPOT_Pcnt=26 FINDPEAKS_SCORE=0.3276 FINDPEAKS_Pcnt=33 IROC_SCORE=0.9879 IROC_Pcnt=8 POISSON_SCORE=0.4009 POISSON_Pcnt=31 GSM=GSM665821 dateUnrestricted=2011-11-02 track UW_Fetal_Kidney_Right_ChromatinAccessibility_H23640_DS16801t bigDataUrl UW_Fetal_Kidney_Right_ChromatinAccessibility_H23640_DS16801.bigWig shortLabel FKR DNase 40 01 longLabel Fetal Kidney Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4546 Pcnt=79) type bigWig 0 90000 parent containeredacc3DNase color 0,105,100 metadata sample_alias=fKidney_Right.H-23640d115 sample_common_name="Fetal Kidney, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Kidney, Right" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4546 HOTSPOT_Pcnt=79 FINDPEAKS_SCORE=0.4637 FINDPEAKS_Pcnt=79 IROC_SCORE=0.9941 IROC_Pcnt=54 POISSON_SCORE=0.5204 POISSON_Pcnt=82 GSM=GSM665833 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_ChromatinAccessibility_H23399_DS15461t bigDataUrl UW_Fetal_Lung_ChromatinAccessibility_H23399_DS15461.bigWig shortLabel FL DNase 99 61 longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4228 Pcnt=67) type bigWig 0 90000 parent containeredacc3DNase color 0,99,100 metadata sample_alias=fLung.H-23399d112 sample_common_name="Fetal Lung" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung" tissue_depot=UW collection_method=fetal donor_id=H-23399 donor_age="day 112" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4228 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.4375 FINDPEAKS_Pcnt=67 IROC_SCORE=0.9931 IROC_Pcnt=33 POISSON_SCORE=0.4915 POISSON_Pcnt=69 GSM=GSM665805 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_ChromatinAccessibility_H23419_DS15573t bigDataUrl UW_Fetal_Lung_ChromatinAccessibility_H23419_DS15573.bigWig shortLabel FL DNase 19 73 longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3539 Pcnt=41) type bigWig 0 90000 parent containeredacc3DNase color 0,93,100 metadata sample_alias=fLung.H-23419d82 sample_common_name="Fetal Lung" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung" tissue_depot=UW collection_method=fetal donor_id=H-23419 donor_age="day 82" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3539 HOTSPOT_Pcnt=41 FINDPEAKS_SCORE=0.3656 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9925 IROC_Pcnt=28 POISSON_SCORE=0.4314 POISSON_Pcnt=44 GSM=GSM665806 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Left_ChromatinAccessibility_H23435_DS15637t bigDataUrl UW_Fetal_Lung_Left_ChromatinAccessibility_H23435_DS15637.bigWig shortLabel FLL DNase 35 37 longLabel Fetal Lung Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.378 Pcnt=51) type bigWig 0 90000 parent containeredacc3DNase color 0,87,100 metadata sample_alias=fLung_Left.H-23435d117 sample_common_name="Fetal Lung, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Left" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.378 HOTSPOT_Pcnt=51 FINDPEAKS_SCORE=0.3959 FINDPEAKS_Pcnt=54 IROC_SCORE=0.9932 IROC_Pcnt=36 POISSON_SCORE=0.4521 POISSON_Pcnt=51 GSM=GSM665808 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Left_ChromatinAccessibility_H23604_DS16570t bigDataUrl UW_Fetal_Lung_Left_ChromatinAccessibility_H23604_DS16570.bigWig shortLabel FLL DNase 04 70 longLabel Fetal Lung Left DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4467 Pcnt=74) type bigWig 0 90000 parent containeredacc3DNase color 0,81,100 metadata sample_alias=fLung_Left.H-23604d110 sample_common_name="Fetal Lung, Left" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Left" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4467 HOTSPOT_Pcnt=74 FINDPEAKS_SCORE=0.4611 FINDPEAKS_Pcnt=77 IROC_SCORE=0.9939 IROC_Pcnt=51 POISSON_SCORE=0.5077 POISSON_Pcnt=77 GSM=GSM665828 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23435_DS15632t bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23435_DS15632.bigWig shortLabel FLR DNase 35 32 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4206 Pcnt=64) type bigWig 0 90000 parent containeredacc3DNase color 0,75,100 metadata sample_alias=fLung_Right.H-23435d117 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23435 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4206 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4306 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9938 IROC_Pcnt=49 POISSON_SCORE=0.4901 POISSON_Pcnt=67 GSM=GSM665807 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23604_DS16566t bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23604_DS16566.bigWig shortLabel FLR DNase 04 66 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4497 Pcnt=77) type bigWig 0 90000 parent containeredacc3DNase color 0,69,100 metadata sample_alias=fLung_Right.H-23604d110 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23604 donor_age="day 110" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4497 HOTSPOT_Pcnt=77 FINDPEAKS_SCORE=0.4574 FINDPEAKS_Pcnt=74 IROC_SCORE=0.9949 IROC_Pcnt=64 POISSON_SCORE=0.5246 POISSON_Pcnt=85 GSM=GSM665827 dateUnrestricted=2011-11-02 track UW_Fetal_Lung_Right_ChromatinAccessibility_H23640_DS16790t bigDataUrl UW_Fetal_Lung_Right_ChromatinAccessibility_H23640_DS16790.bigWig shortLabel FLR DNase 40 90 longLabel Fetal Lung Right DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4037 Pcnt=59) type bigWig 0 90000 parent containeredacc3DNase color 0,63,100 metadata sample_alias=fLung_Right.H-23640d115 sample_common_name="Fetal Lung, Right" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Lung, Right" tissue_depot=UW collection_method=fetal donor_id=H-23640 donor_age="day 115" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.4037 HOTSPOT_Pcnt=59 FINDPEAKS_SCORE=0.4185 FINDPEAKS_Pcnt=59 IROC_SCORE=0.9916 IROC_Pcnt=26 POISSON_SCORE=0.4651 POISSON_Pcnt=56 GSM=GSM665832 dateUnrestricted=2011-11-02 track UW_Fetal_Thymus_ChromatinAccessibility_H23589_DS16490t bigDataUrl UW_Fetal_Thymus_ChromatinAccessibility_H23589_DS16490.bigWig shortLabel FT DNase 89 90 longLabel Fetal Thymus DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.301 Pcnt=15) type bigWig 0 90000 parent containeredacc3DNase color 0,57,100 metadata sample_alias=fThymus.H-23589d147 sample_common_name="Fetal Thymus" molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="Fetal Thymus" tissue_depot=UW collection_method=fetal donor_id=H-23589 donor_age="day 147" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.301 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.304 FINDPEAKS_Pcnt=26 IROC_SCORE=0.9963 IROC_Pcnt=82 POISSON_SCORE=0.3506 POISSON_Pcnt=8 GSM=GSM665823 dateUnrestricted=2011-11-02 track UW_iPS_DF_19_11_ChromatinAccessibility_DS15153t bigDataUrl UW_iPS_DF_19_11_ChromatinAccessibility_DS15153.bigWig shortLabel iD19.11 DNase 53 53 longLabel iPS DF19.11 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3406 Pcnt=33) type bigWig 0 90000 parent containeredacc3DNase color 0,51,100 metadata sample_alias=iPS_19_11 sample_common_name="iPS DF 19.11 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 19.11 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=31 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3406 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.2874 FINDPEAKS_Pcnt=18 IROC_SCORE=0.9933 IROC_Pcnt=41 POISSON_SCORE=0.394 POISSON_Pcnt=26 GSM=GSM665801 dateUnrestricted=2011-11-02 track UW_iPS_DF_19_7_ChromatinAccessibility_DS15148t bigDataUrl UW_iPS_DF_19_7_ChromatinAccessibility_DS15148.bigWig shortLabel iD19.7 DNase 48 48 longLabel iPS DF19.7 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3004 Pcnt=13) type bigWig 0 90000 parent containeredacc3DNase color 0,45,100 metadata sample_alias=iPS_19_7 sample_common_name="iPS DF 19.7 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 19.7 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.3004 HOTSPOT_Pcnt=13 FINDPEAKS_SCORE=0.2528 FINDPEAKS_Pcnt=5 IROC_SCORE=0.9933 IROC_Pcnt=41 POISSON_SCORE=0.3539 POISSON_Pcnt=13 GSM=GSM665800 dateUnrestricted=2011-11-02 track UW_iPS_DF_4_7_ChromatinAccessibility_DS15169t bigDataUrl UW_iPS_DF_4_7_ChromatinAccessibility_DS15169.bigWig shortLabel iD4.7 DNase 69 69 longLabel iPS DF4.7 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2838 Pcnt=10 ) type bigWig 0 90000 parent containeredacc3DNase color 0,39,100 metadata sample_alias=iPS_4_7 sample_common_name="iPS DF 4.7 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 4.7 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.2838 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.2341 FINDPEAKS_Pcnt=3 IROC_SCORE=0.9886 IROC_Pcnt=13 POISSON_SCORE=0.3696 POISSON_Pcnt=18 GSM=GSM665803 dateUnrestricted=2011-11-02 track UW_iPS_DF_6_9_ChromatinAccessibility_DS15164t bigDataUrl UW_iPS_DF_6_9_ChromatinAccessibility_DS15164.bigWig shortLabel iD6.9 DNase 64 64 longLabel iPS DF6.9 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.307 Pcnt=21) type bigWig 0 90000 parent containeredacc3DNase color 0,33,100 metadata sample_alias=iPS_6_9 sample_common_name="iPS DF 6.9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thomson, Morgridge Institute for Research, University of Wisconsin-Madison" biomaterial_type="Cell Line" line="iPS DF 6.9 Cell Line" lineage="Derived from newborn foreskin fibroblast" differentiation_stage="Induced pluripotent stem cell" differentiation_method="http://www.sciencemag.org/cgi/content/full/324/5928/797?rss=1" passage=32 medium=NA Sex=Unknown batch=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.307 HOTSPOT_Pcnt=21 FINDPEAKS_SCORE=0.2693 FINDPEAKS_Pcnt=15 IROC_SCORE=0.9907 IROC_Pcnt=18 POISSON_SCORE=0.3938 POISSON_Pcnt=23 GSM=GSM665802 dateUnrestricted=2011-11-02 track UW_MCD56_Primary_Cells_DNase_RO01689_DS16376t bigDataUrl UW_MCD56_Primary_Cells_DNase_RO01689_DS16376.bigWig shortLabel MCD56 DNase 89 76 longLabel Mobilized CD56 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.266 Pcnt=8) type bigWig 0 90000 parent containeredacc3DNase color 0,27,100 metadata sample_alias=CD56.RO_01689 sample_common_name="Mobilized CD56 Primary Cells" molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="Mobilized CD56 Primary Cells" markers=CD56+ donor_id="RO 01689" donor_age="year 34" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511-518 (2006)" Hotspot_Score=0.266 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.2682 FINDPEAKS_Pcnt=13 IROC_SCORE=0.9976 IROC_Pcnt=100 POISSON_SCORE=0.31 POISSON_Pcnt=5 GSM=GSM665820 dateUnrestricted=2011-11-02 track containeredacc3H4K8ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H4K8ac Summary longLabel Epigenome Atlas Release III H4K8ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H4K8ac_SK283t bigDataUrl UCSD_H9_H4K8ac_SK283.bigWig shortLabel H9 H4K8ac 83 longLabel H9 H4K8ac Signal from REMC/UCSD (Hotspot_Score=0.1166 Pcnt=50) type bigWig 0 90000 parent containeredacc3H4K8ac color 150,150,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.1166 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0131 FINDPEAKS_Pcnt=50 IROC_SCORE=0.5504 IROC_Pcnt=50 POISSON_SCORE=0.2539 POISSON_Pcnt=50 GSM=GSM667638 dateUnrestricted=2011-12-23 track UCSD_H9_H4K8ac_YL241t bigDataUrl UCSD_H9_H4K8ac_YL241.bigWig shortLabel H9 H4K8ac 41 longLabel H9 H4K8ac Signal from REMC/UCSD (Hotspot_Score=0.1714 Pcnt=100) type bigWig 0 90000 parent containeredacc3H4K8ac color 80,150,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=Millipore07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.1714 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0319 FINDPEAKS_Pcnt=100 IROC_SCORE=0.7323 IROC_Pcnt=100 POISSON_SCORE=0.2937 POISSON_Pcnt=100 GSM=GSM667637 dateUnrestricted=2011-11-15 track containeredacc3H3K23me2 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K23me2 Summary longLabel Epigenome Atlas Release III H3K23me2 Summary for 1 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H3K23me2_SK277t bigDataUrl UCSD_H9_H3K23me2_SK277.bigWig shortLabel H9 H3K23me2 77 longLabel H9 H3K23me2 Signal from REMC/UCSD (Hotspot_Score=0.2219 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K23me2 color 0,150,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.2219 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0632 FINDPEAKS_Pcnt=100 IROC_SCORE=0.838 IROC_Pcnt=100 POISSON_SCORE=0.378 POISSON_Pcnt=100 GSM=GSM667621 dateUnrestricted=2011-12-23 track containeredacc3H3K18ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K18ac Summary longLabel Epigenome Atlas Release III H3K18ac Summary for 3 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_H3K18ac_AK52t bigDataUrl UCSD_H1_H3K18ac_AK52.bigWig shortLabel H1 H3K18ac 52 longLabel H1 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.0988 Pcnt=67) type bigWig 0 90000 parent containeredacc3H3K18ac color 150,0,0 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab52946 chip_antibody_lot=945863 Hotspot_Score=0.0988 HOTSPOT_Pcnt=67 FINDPEAKS_SCORE=0.006 FINDPEAKS_Pcnt=33 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.2303 POISSON_Pcnt=67 GSM=GSM667614 dateUnrestricted=2011-12-23 track UCSD_H1_H3K18ac_AK58t bigDataUrl UCSD_H1_H3K18ac_AK58.bigWig shortLabel H1 H3K18ac 58 longLabel H1 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.0893 Pcnt=33) type bigWig 0 90000 parent containeredacc3H3K18ac color 104,0,0 metadata sample_alias=H1-09 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab52946 chip_antibody_lot=945863 Hotspot_Score=0.0893 HOTSPOT_Pcnt=33 FINDPEAKS_SCORE=0.0076 FINDPEAKS_Pcnt=67 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.227 POISSON_Pcnt=33 GSM=GSM667615 dateUnrestricted=2011-12-23 track UCSD_H9_H3K18ac_SK276t bigDataUrl UCSD_H9_H3K18ac_SK276.bigWig shortLabel H9 H3K18ac 76 longLabel H9 H3K18ac Signal from REMC/UCSD (Hotspot_Score=0.1918 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K18ac color 58,0,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=527530 Hotspot_Score=0.1918 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0426 FINDPEAKS_Pcnt=100 IROC_SCORE=0.768 IROC_Pcnt=100 POISSON_SCORE=0.3285 POISSON_Pcnt=100 GSM=GSM667616 dateUnrestricted=2011-12-23 track containeredacc3BS container multiWig superTrack edacc3ContainerbyExperiment shortLabel BS Summary longLabel Epigenome Atlas Release III BS Summary for 6 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_Derived_Neuronal_Progenitor_BS_combinedt bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_combined.bigWig shortLabel HDNP BS combined longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,250 metadata sample_alias=H1-NPC_r2 sample_common_name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.94 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE=80 GSM=GSM675546 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1at bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1a.bigWig shortLabel HDNP BS r1a longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,200 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675542 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1bt bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1b.bigWig shortLabel HDNP BS r1b longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,180 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675543 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r1ct bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r1c.bigWig shortLabel HDNP BS r1c longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,160 metadata sample alias=H1-NPC_r1 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=25 medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675544 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r2at bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r2a.bigWig shortLabel HDNP BS r2a longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,140 metadata sample alias=H1-NPC_r2 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675545 dateUnrestricted=2011-11-16 track UCSD_H1_Derived_Neuronal_Progenitor_BS_r2bt bigDataUrl UCSD_H1_Derived_Neuronal_Progenitor_BS_r2b.bigWig shortLabel HDNP BS r2b longLabel H1 Derived Neuronal Progenitor Cultured Cells DNA Methylation by Bisulfite-Seq Signal from REMC/UCSD type bigWig 0 90000 parent containeredacc3BS color 0,0,120 metadata sample alias=H1-NPC_r2 sample common name="H1 Derived Neuronal Progenitor Cultured Cells" molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated into neural progenitor cells" differentiation_method="H1 cells were differentiated by culturing in insulin, SB, Noggin" passage=27 medium=TeSR Sex=Male batch="Replicate 2" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16C for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95C 2 min; 98C 30 sec, 4 cycles of 98C 15 sec, 60C 30 sec, 72C 4 min; 72C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" GSM=GSM675546 dateUnrestricted=2011-11-16 track containeredacc3H3K4me1 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K4me1 Summary longLabel Epigenome Atlas Release III H3K4me1 Summary for 28 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_H3K4me1_92t bigDataUrl BI_Adipose_Nuclei_H3K4me1_92.bigWig shortLabel AN H3K4me1 92 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4587 Pcnt=68) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,250,166 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4587 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.427 FINDPEAKS_Pcnt=71 IROC_SCORE=0.9931 IROC_Pcnt=64 POISSON_SCORE=0.591 POISSON_Pcnt=75 GSM=GSM669908 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me1_93t bigDataUrl BI_Adipose_Nuclei_H3K4me1_93.bigWig shortLabel AN H3K4me1 93 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.474 Pcnt=75) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,242,166 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.474 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.4466 FINDPEAKS_Pcnt=75 IROC_SCORE=0.9948 IROC_Pcnt=68 POISSON_SCORE=0.5791 POISSON_Pcnt=64 GSM=GSM670045 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K4me1_94t bigDataUrl BI_Adipose_Nuclei_H3K4me1_94.bigWig shortLabel AN H3K4me1 94 longLabel Adipose Nuclei H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5409 Pcnt=82) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,234,166 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5409 HOTSPOT_Pcnt=82 FINDPEAKS_SCORE=0.5394 FINDPEAKS_Pcnt=82 IROC_SCORE=0.997 IROC_Pcnt=86 POISSON_SCORE=0.6535 POISSON_Pcnt=82 GSM=GSM669975 dateUnrestricted=2011-12-31 track BI_Adult_Kidney_H3K4me1_27t bigDataUrl BI_Adult_Kidney_H3K4me1_27.bigWig shortLabel AK H3K4me1 27 longLabel Adult Kidney H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.203 Pcnt=18) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,226,166 metadata sample_alias=36 sample_common_name="Adult Kidney" collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.203 HOTSPOT_Pcnt=18 FINDPEAKS_SCORE=0.0991 FINDPEAKS_Pcnt=14 IROC_SCORE=0.9154 IROC_Pcnt=14 POISSON_SCORE=0.3591 POISSON_Pcnt=11 GSM=GSM670025 dateUnrestricted=2011-12-31 track BI_Adult_Liver_H3K4me1_4t bigDataUrl BI_Adult_Liver_H3K4me1_4.bigWig shortLabel AL H3K4me1 4 longLabel Adult Liver H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4334 Pcnt=64) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,218,166 metadata sample_alias=4 sample_common_name="Adult Liver" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4334 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.4242 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9962 IROC_Pcnt=75 POISSON_SCORE=0.5533 POISSON_Pcnt=61 GSM=GSM669972 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58.bigWig shortLabel BMDMSC H3K4me1 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5693 Pcnt=89) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,210,166 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5693 HOTSPOT_Pcnt=89 FINDPEAKS_SCORE=0.5675 FINDPEAKS_Pcnt=89 IROC_SCORE=0.9985 IROC_Pcnt=96 POISSON_SCORE=0.6662 POISSON_Pcnt=89 GSM=GSM669911 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59.bigWig shortLabel BMDMSC H3K4me1 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3279 Pcnt=36) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,202,166 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3279 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.2691 FINDPEAKS_Pcnt=43 IROC_SCORE=0.9796 IROC_Pcnt=54 POISSON_SCORE=0.438 POISSON_Pcnt=36 GSM=GSM669920 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60.bigWig shortLabel BMDMSC H3K4me1 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3071 Pcnt=32) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,194,166 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3071 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.2346 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9741 IROC_Pcnt=50 POISSON_SCORE=0.4041 POISSON_Pcnt=32 GSM=GSM669980 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K4me1_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K4me1_112.bigWig shortLabel BAC H3K4me1 12 longLabel Brain Anterior Caudate H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=7) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,186,166 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 HOTSPOT_Pcnt=7 FINDPEAKS_SCORE=0.0737 FINDPEAKS_Pcnt=7 IROC_SCORE=0.8915 IROC_Pcnt=7 POISSON_SCORE=0.3855 POISSON_Pcnt=21 GSM=GSM669970 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K4me1_112t bigDataUrl BI_Brain_Cingulate_Gyrus_H3K4me1_112.bigWig shortLabel BCG H3K4me1 12 longLabel Brain Cingulate Gyrus H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2017 Pcnt=14) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,178,166 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2017 HOTSPOT_Pcnt=14 FINDPEAKS_SCORE=0.0918 FINDPEAKS_Pcnt=11 IROC_SCORE=0.8996 IROC_Pcnt=11 POISSON_SCORE=0.3775 POISSON_Pcnt=18 GSM=GSM670033 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K4me1_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K4me1_112.bigWig shortLabel BHM H3K4me1 12 longLabel Brain Hippocampus Middle H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2108 Pcnt=21) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,170,166 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2108 HOTSPOT_Pcnt=21 FINDPEAKS_SCORE=0.1132 FINDPEAKS_Pcnt=21 IROC_SCORE=0.9181 IROC_Pcnt=18 POISSON_SCORE=0.3721 POISSON_Pcnt=14 GSM=GSM669962 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K4me1_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K4me1_112.bigWig shortLabel BITL H3K4me1 12 longLabel Brain Inferior Temporal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.234 Pcnt=29) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,162,166 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.234 HOTSPOT_Pcnt=29 FINDPEAKS_SCORE=0.1383 FINDPEAKS_Pcnt=29 IROC_SCORE=0.9349 IROC_Pcnt=25 POISSON_SCORE=0.3994 POISSON_Pcnt=29 GSM=GSM670036 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K4me1_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K4me1_112.bigWig shortLabel BMFL H3K4me1 12 longLabel Brain Mid Frontal Lobe H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.1575 Pcnt=4) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,154,166 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1575 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0437 FINDPEAKS_Pcnt=4 IROC_SCORE=0.8498 IROC_Pcnt=4 POISSON_SCORE=0.3314 POISSON_Pcnt=4 GSM=GSM670015 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K4me1_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K4me1_112.bigWig shortLabel BSN H3K4me1 12 longLabel Brain Substantia Nigra H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2177 Pcnt=25) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,146,166 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2177 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.1215 FINDPEAKS_Pcnt=25 IROC_SCORE=0.9255 IROC_Pcnt=21 POISSON_SCORE=0.3937 POISSON_Pcnt=25 GSM=GSM669941 dateUnrestricted=2011-12-31 track BI_CD34_Cultured_Cells_H3K4me1_123t bigDataUrl BI_CD34_Cultured_Cells_H3K4me1_123.bigWig shortLabel CD34 H3K4me1 23 longLabel CD34 Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.421 Pcnt=57) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,138,166 metadata sample_alias=188 sample_common_name="CD34 Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.421 HOTSPOT_Pcnt=57 FINDPEAKS_SCORE=0.3943 FINDPEAKS_Pcnt=61 IROC_SCORE=0.9955 IROC_Pcnt=71 POISSON_SCORE=0.5144 POISSON_Pcnt=54 GSM=GSM669907 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_57.bigWig shortLabel CfBMDMSC H3K4me1 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6298 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,130,166 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6298 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6314 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9986 IROC_Pcnt=100 POISSON_SCORE=0.7148 POISSON_Pcnt=100 GSM=GSM670024 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_58.bigWig shortLabel CfBMDMSC H3K4me1 58 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5252 Pcnt=79) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,122,166 metadata sample_alias=80 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5252 HOTSPOT_Pcnt=79 FINDPEAKS_SCORE=0.4904 FINDPEAKS_Pcnt=79 IROC_SCORE=0.9963 IROC_Pcnt=79 POISSON_SCORE=0.6278 POISSON_Pcnt=79 GSM=GSM669909 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_59.bigWig shortLabel CfBMDMSC H3K4me1 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.6161 Pcnt=96) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,114,166 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6161 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.6159 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9983 IROC_Pcnt=93 POISSON_SCORE=0.7046 POISSON_Pcnt=96 GSM=GSM670000 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K4me1_60.bigWig shortLabel CfBMDMSC H3K4me1 60 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.5556 Pcnt=86) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,106,166 metadata sample_alias=82 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5556 HOTSPOT_Pcnt=86 FINDPEAKS_SCORE=0.5446 FINDPEAKS_Pcnt=86 IROC_SCORE=0.9974 IROC_Pcnt=89 POISSON_SCORE=0.6642 POISSON_Pcnt=86 GSM=GSM669927 dateUnrestricted=2011-12-31 track BI_Fetal_Lung_H3K4me1_UW_H23266t bigDataUrl BI_Fetal_Lung_H3K4me1_UW_H23266.bigWig shortLabel FL H3K4me1 66 longLabel Fetal Lung H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4642 Pcnt=71) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,98,166 metadata sample_alias="UW DS # 14724" sample_common_name="Fetal Lung" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H23266" biomaterial_provider=UW donor_age="85 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4642 HOTSPOT_Pcnt=71 FINDPEAKS_SCORE=0.41 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9895 IROC_Pcnt=61 POISSON_SCORE=0.5819 POISSON_Pcnt=68 GSM=GSM669969 dateUnrestricted=2011-12-31 track BI_HUES48_H3K4me1t bigDataUrl BI_HUES48_H3K4me1.bigWig shortLabel HUES48 H3K4me1 e1 longLabel HUES48 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3364 Pcnt=39) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,90,166 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3364 HOTSPOT_Pcnt=39 FINDPEAKS_SCORE=0.2547 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9612 IROC_Pcnt=39 POISSON_SCORE=0.4983 POISSON_Pcnt=43 GSM=GSM669954 dateUnrestricted=2011-12-31 track BI_HUES64_H3K4me1t bigDataUrl BI_HUES64_H3K4me1.bigWig shortLabel HUES64 H3K4me1 e1 longLabel HUES64 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3525 Pcnt=43) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,82,166 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3525 HOTSPOT_Pcnt=43 FINDPEAKS_SCORE=0.2689 FINDPEAKS_Pcnt=39 IROC_SCORE=0.9604 IROC_Pcnt=36 POISSON_SCORE=0.5135 POISSON_Pcnt=50 GSM=GSM669966 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me1_01t bigDataUrl BI_HUES6_H3K4me1_01.bigWig shortLabel HUES6 H3K4me1 longLabel HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.3758 Pcnt=46) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,74,166 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3758 HOTSPOT_Pcnt=46 FINDPEAKS_SCORE=0.3014 FINDPEAKS_Pcnt=50 IROC_SCORE=0.9729 IROC_Pcnt=46 POISSON_SCORE=0.534 POISSON_Pcnt=57 GSM=GSM669885 dateUnrestricted=2011-12-31 track BI_HUES6_H3K4me1_08t bigDataUrl BI_HUES6_H3K4me1_08.bigWig shortLabel HUES6 H3K4me1 longLabel HUES6 H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.4317 Pcnt=61) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,66,166 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.4317 HOTSPOT_Pcnt=61 FINDPEAKS_SCORE=0.36 FINDPEAKS_Pcnt=57 IROC_SCORE=0.9817 IROC_Pcnt=57 POISSON_SCORE=0.5852 POISSON_Pcnt=71 GSM=GSM669891 dateUnrestricted=2011-12-31 track BI_Rectal_Mucosa_H3K4me1_30t bigDataUrl BI_Rectal_Mucosa_H3K4me1_30.bigWig shortLabel RM H3K4me1 30 longLabel Rectal Smooth Mucosa H3K4me1 Signal from REMC/Broad (Hotspot_Score=0.2008 Pcnt=11) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,58,166 metadata sample_alias=39 sample_common_name="Rectal Smooth Muscle" collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2008 HOTSPOT_Pcnt=11 FINDPEAKS_SCORE=0.1086 FINDPEAKS_Pcnt=18 IROC_SCORE=0.935 IROC_Pcnt=29 POISSON_SCORE=0.3341 POISSON_Pcnt=7 GSM=GSM669964 dateUnrestricted=2011-12-31 track UCSD_H9_H3K4me1_YL123t bigDataUrl UCSD_H9_H3K4me1_YL123.bigWig shortLabel H9 H3K4me1 23 longLabel H9 H3K4me1 Signal from REMC/UCSD (Hotspot_Score=0.3782 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,50,166 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.3782 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.2741 FINDPEAKS_Pcnt=46 IROC_SCORE=0.9583 IROC_Pcnt=32 POISSON_SCORE=0.4835 POISSON_Pcnt=39 GSM=GSM667626 dateUnrestricted=2011-11-15 track UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K4me1_RM080t bigDataUrl UCSFUBC_Breast_Luminal_Epithelial_Cell_H3K4me1_RM080.bigWig shortLabel BLEC H3K4me1 80 longLabel Breast Luminal Epithelial Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.4115 Pcnt=54) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,42,166 metadata sample_alias="Breast Luminal Epi RM080" sample_common_name="Breast, Luminal Epithelial Cells" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal Epithelial Cell" markers=CD227+ donor_id=RM080 donor_age="33 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 blood_type= experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=54-304bp chip_antibody=H3K4me1 chip_antibody_provider=diagenode chip_antibody_catalog=pAb037050 chip_antibody_lot=A3990011 Hotspot_Score=0.4115 HOTSPOT_Pcnt=54 FINDPEAKS_SCORE=0.3209 FINDPEAKS_Pcnt=54 IROC_SCORE=0.9699 IROC_Pcnt=43 POISSON_SCORE=0.5061 POISSON_Pcnt=46 GSM=GSM669595 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me1_skin01t bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K4me1_skin01.bigWig shortLabel PFK H3K4me1 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K4me1 Signal from REMC/UCSF-UBC (Hotspot_Score=0.5729 Pcnt=93) type bigWig 0 90000 parent containeredacc3H3K4me1 color 0,34,166 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=2.1ug size_fraction=146-420bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAB-037-050 chip_antibody_lot=A399-002341P Hotspot_Score=0.5729 HOTSPOT_Pcnt=93 FINDPEAKS_SCORE=0.6114 FINDPEAKS_Pcnt=93 IROC_SCORE=0.9966 IROC_Pcnt=82 POISSON_SCORE=0.6842 POISSON_Pcnt=93 GSM=GSM669591 dateUnrestricted=2011-12-31 track containeredacc3MeDIP container multiWig superTrack edacc3ContainerbyExperiment shortLabel MeDIP-Seq Summary longLabel Epigenome Atlas Release III MeDIP-Seq Summary for 10 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009t bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4M MeDIP 09 longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2001 Pcnt=30 ) type bigWig 0 90000 parent containeredacc3MeDIP color 255,0,0 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2001 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.0278 FINDPEAKS_Pcnt=30 IROC_SCORE=0.8122 IROC_Pcnt=30 POISSON_SCORE=0.3638 POISSON_Pcnt=30 GSM=GSM669608 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009t bigDataUrl UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4N MeDIP 09 longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1658 Pcnt=20 ) type bigWig 0 90000 parent containeredacc3MeDIP color 231,0,0 metadata sample_alias="CD4 Naive TC009" sample_common_name="CD4 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1658 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0173 FINDPEAKS_Pcnt=20 IROC_SCORE=0.7651 IROC_Pcnt=20 POISSON_SCORE=0.3315 POISSON_Pcnt=20 GSM=GSM669607 dateUnrestricted=2011-12-31 track UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009t bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD8N MeDIP 09 longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1546 Pcnt=10 ) type bigWig 0 90000 parent containeredacc3MeDIP color 207,0,0 metadata sample_alias="CD8 Naive TC009" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1546 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0168 FINDPEAKS_Pcnt=10 IROC_SCORE=0.7574 IROC_Pcnt=10 POISSON_SCORE=0.324 POISSON_Pcnt=10 GSM=GSM669609 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01t bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01.bigWig shortLabel FB MeDIP 01 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3262 Pcnt=70 ) type bigWig 0 90000 parent containeredacc3MeDIP color 183,0,0 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3262 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.1753 FINDPEAKS_Pcnt=70 IROC_SCORE=0.9291 IROC_Pcnt=70 POISSON_SCORE=0.4466 POISSON_Pcnt=70 GSM=GSM669614 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02t bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02.bigWig shortLabel FB MeDIP 02 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4244 Pcnt=100 ) type bigWig 0 90000 parent containeredacc3MeDIP color 159,0,0 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.4244 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.3569 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9634 IROC_Pcnt=100 POISSON_SCORE=0.5016 POISSON_Pcnt=100 GSM=GSM669615 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MeDIP_HuFNSC01t bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC01.bigWig shortLabel NCD MeDIP 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2301 Pcnt=40 ) type bigWig 0 90000 parent containeredacc3MeDIP color 135,0,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2301 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0706 FINDPEAKS_Pcnt=40 IROC_SCORE=0.8839 IROC_Pcnt=50 POISSON_SCORE=0.403 POISSON_Pcnt=50 GSM=GSM669610 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MeDIP_HuFNSC02t bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC02.bigWig shortLabel NCD MeDIP 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3754 Pcnt=90 ) type bigWig 0 90000 parent containeredacc3MeDIP color 111,0,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3754 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.2585 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9538 IROC_Pcnt=90 POISSON_SCORE=0.4854 POISSON_Pcnt=90 GSM=GSM669612 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MeDIP_HuFNSC01t bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC01.bigWig shortLabel NGED MeDIP 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2684 Pcnt=60 ) type bigWig 0 90000 parent containeredacc3MeDIP color 87,0,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2684 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.1089 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9012 IROC_Pcnt=60 POISSON_SCORE=0.4185 POISSON_Pcnt=60 GSM=GSM669611 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MeDIP_HuFNSC02t bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC02.bigWig shortLabel NGED MeDIP 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3672 Pcnt=80 ) type bigWig 0 90000 parent containeredacc3MeDIP color 63,0,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3672 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.2364 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9484 IROC_Pcnt=80 POISSON_SCORE=0.4795 POISSON_Pcnt=80 GSM=GSM669613 dateUnrestricted=2011-12-31 track UCSFUBC_PBMPC_MeDIP_TC009t bigDataUrl UCSFUBC_PBMPC_MeDIP_TC009.bigWig shortLabel PBM MeDIP 09 longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2531 Pcnt=50 ) type bigWig 0 90000 parent containeredacc3MeDIP color 39,0,0 metadata sample_alias="PBMC TC009" sample_common_name="Peripheral Blood Mononuclear Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2531 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0748 FINDPEAKS_Pcnt=50 IROC_SCORE=0.867 IROC_Pcnt=40 POISSON_SCORE=0.3941 POISSON_Pcnt=40 GSM=GSM669606 dateUnrestricted=2011-12-31 track containeredacc3H3K23ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K23ac Summary longLabel Epigenome Atlas Release III H3K23ac Summary for 4 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_H3K23ac_AK53t bigDataUrl UCSD_H1_H3K23ac_AK53.bigWig shortLabel H1 H3K23ac 53 longLabel H1 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0938 Pcnt=75) type bigWig 0 90000 parent containeredacc3H3K23ac color 100,150,0 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0938 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.0057 FINDPEAKS_Pcnt=25 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1979 POISSON_Pcnt=75 GSM=GSM667617 dateUnrestricted=2011-12-23 track UCSD_H1_H3K23ac_AK59t bigDataUrl UCSD_H1_H3K23ac_AK59.bigWig shortLabel H1 H3K23ac 59 longLabel H1 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0796 Pcnt=25) type bigWig 0 90000 parent containeredacc3H3K23ac color 120,150,0 metadata sample_alias=H1-09 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=26 medium=mTeSER Sex=Male batch=H1J5p26 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0796 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.0079 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.1922 POISSON_Pcnt=50 GSM=GSM667618 dateUnrestricted=2011-12-23 track UCSD_H9_H3K23ac_SK289t bigDataUrl UCSD_H9_H3K23ac_SK289.bigWig shortLabel H9 H3K23ac 89 longLabel H9 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.1619 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K23ac color 140,150,0 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Millipore chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.1619 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.022 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6618 IROC_Pcnt=100 POISSON_SCORE=0.2651 POISSON_Pcnt=100 GSM=GSM667620 dateUnrestricted=2011-12-23 track UCSD_H9_H3K23ac_YL236t bigDataUrl UCSD_H9_H3K23ac_YL236.bigWig shortLabel H9 H3K23ac 36 longLabel H9 H3K23ac Signal from REMC/UCSD (Hotspot_Score=0.0938 Pcnt=75) type bigWig 0 90000 parent containeredacc3H3K23ac color 160,150,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Millipore chip_antibody_catalog=07-355 chip_antibody_lot=27133 Hotspot_Score=0.0938 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.0082 FINDPEAKS_Pcnt=75 IROC_SCORE=0.454 IROC_Pcnt=50 POISSON_SCORE=0.1718 POISSON_Pcnt=25 GSM=GSM667619 dateUnrestricted=2011-11-15 track containeredacc3H3K79me1 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K79me1 Summary longLabel Epigenome Atlas Release III H3K79me1 Summary for 1 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H3K79me1_SK329t bigDataUrl UCSD_H9_H3K79me1_SK329.bigWig shortLabel H9 H3K79me1 29 longLabel H9 H3K79me1 Signal from REMC/UCSD (Hotspot_Score=0.1293 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K79me1 color 255,0,255 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1293 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0198 FINDPEAKS_Pcnt=100 IROC_SCORE=0.748 IROC_Pcnt=100 POISSON_SCORE=0.2661 POISSON_Pcnt=100 GSM=GSM667629 dateUnrestricted=2011-12-23 track containeredacc3H4K91ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H4K91ac Summary longLabel Epigenome Atlas Release III H4K91ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H4K91ac_SK287t bigDataUrl UCSD_H9_H4K91ac_SK287.bigWig shortLabel H9 H4K91ac 87 longLabel H9 H4K91ac Signal from REMC/UCSD (Hotspot_Score=0.1802 Pcnt=100) type bigWig 0 90000 parent containeredacc3H4K91ac color 0,150,150 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1802 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0233 FINDPEAKS_Pcnt=100 IROC_SCORE=0.704 IROC_Pcnt=100 POISSON_SCORE=0.3022 POISSON_Pcnt=100 GSM=GSM667639 dateUnrestricted=2011-12-23 track UCSD_H9_H4K91ac_SK332t bigDataUrl UCSD_H9_H4K91ac_SK332.bigWig shortLabel H9 H4K91ac 32 longLabel H9 H4K91ac Signal from REMC/UCSD (Hotspot_Score=0.1165 Pcnt=50) type bigWig 0 90000 parent containeredacc3H4K91ac color 0,100,100 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1165 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0144 FINDPEAKS_Pcnt=50 IROC_SCORE=0.61 IROC_Pcnt=50 POISSON_SCORE=0.2691 POISSON_Pcnt=50 GSM=GSM667640 dateUnrestricted=2011-12-23 track containeredacc3H3K9ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K9ac Summary longLabel Epigenome Atlas Release III H3K9ac Summary for 25 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Derived_Mesenchymal_H3K9ac_1t bigDataUrl BI_Adipose_Derived_Mesenchymal_H3K9ac_1.bigWig shortLabel ADMSC H3K9ac 1 longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.5474 Pcnt=96) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,168,0 metadata sample_alias=1 sample_common_name="Adipose Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5474 HOTSPOT_Pcnt=96 FINDPEAKS_SCORE=0.5254 FINDPEAKS_Pcnt=96 IROC_SCORE=0.9974 IROC_Pcnt=84 POISSON_SCORE=0.5802 POISSON_Pcnt=96 GSM=GSM670020 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_92t bigDataUrl BI_Adipose_Nuclei_H3K9ac_92.bigWig shortLabel AN H3K9ac 92 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1718 Pcnt=16) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,162,0 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1718 HOTSPOT_Pcnt=16 FINDPEAKS_SCORE=0.1151 FINDPEAKS_Pcnt=16 IROC_SCORE=0.995 IROC_Pcnt=68 POISSON_SCORE=0.2523 POISSON_Pcnt=20 GSM=GSM669904 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_93t bigDataUrl BI_Adipose_Nuclei_H3K9ac_93.bigWig shortLabel AN H3K9ac 93 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2159 Pcnt=44) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,156,0 metadata sample_alias=141 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=93 biomaterial_provider="Harvard University" donor_age=41 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2159 HOTSPOT_Pcnt=44 FINDPEAKS_SCORE=0.1408 FINDPEAKS_Pcnt=36 IROC_SCORE=0.9889 IROC_Pcnt=24 POISSON_SCORE=0.2975 POISSON_Pcnt=44 GSM=GSM669922 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_94t bigDataUrl BI_Adipose_Nuclei_H3K9ac_94.bigWig shortLabel AN H3K9ac 94 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2325 Pcnt=68) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,150,0 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2325 HOTSPOT_Pcnt=68 FINDPEAKS_SCORE=0.1697 FINDPEAKS_Pcnt=52 IROC_SCORE=0.9926 IROC_Pcnt=52 POISSON_SCORE=0.3183 POISSON_Pcnt=64 GSM=GSM669938 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K9ac_95t bigDataUrl BI_Adipose_Nuclei_H3K9ac_95.bigWig shortLabel AN H3K9ac 95 longLabel Adipose Nuclei H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1957 Pcnt=32) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,144,0 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1957 HOTSPOT_Pcnt=32 FINDPEAKS_SCORE=0.1165 FINDPEAKS_Pcnt=20 IROC_SCORE=0.9968 IROC_Pcnt=80 POISSON_SCORE=0.2533 POISSON_Pcnt=24 GSM=GSM670027 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_58.bigWig shortLabel BMDMSC H3K9ac 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3973 Pcnt=80) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,138,0 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3973 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.3634 FINDPEAKS_Pcnt=88 IROC_SCORE=0.9986 IROC_Pcnt=100 POISSON_SCORE=0.421 POISSON_Pcnt=80 GSM=GSM669937 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59.bigWig shortLabel BMDMSC H3K9ac 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1158 Pcnt=4) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,132,0 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1158 HOTSPOT_Pcnt=4 FINDPEAKS_SCORE=0.0744 FINDPEAKS_Pcnt=8 IROC_SCORE=0.9903 IROC_Pcnt=36 POISSON_SCORE=0.1712 POISSON_Pcnt=4 GSM=GSM669999 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K9ac_60.bigWig shortLabel BMDMSC H3K9ac 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4019 Pcnt=84) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,126,0 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4019 HOTSPOT_Pcnt=84 FINDPEAKS_SCORE=0.3734 FINDPEAKS_Pcnt=92 IROC_SCORE=0.9981 IROC_Pcnt=96 POISSON_SCORE=0.431 POISSON_Pcnt=84 GSM=GSM669983 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K9ac_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K9ac_112.bigWig shortLabel BAC H3K9ac 12 longLabel Brain Anterior Caudate H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2092 Pcnt=40) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,120,0 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2092 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.144 FINDPEAKS_Pcnt=40 IROC_SCORE=0.9885 IROC_Pcnt=16 POISSON_SCORE=0.2972 POISSON_Pcnt=40 GSM=GSM669950 dateUnrestricted=2011-12-31 track BI_Brain_Cingulate_Gyrus_H3K9ac_112t bigDataUrl BI_Brain_Cingulate_Gyrus_H3K9ac_112.bigWig shortLabel BCG H3K9ac 12 longLabel Brain Cingulate Gyrus H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2278 Pcnt=56) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,114,0 metadata sample_alias=175 sample_common_name="Brain, Cingulate Gyrus" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Cingulate Gyrus" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2278 HOTSPOT_Pcnt=56 FINDPEAKS_SCORE=0.1712 FINDPEAKS_Pcnt=60 IROC_SCORE=0.988 IROC_Pcnt=12 POISSON_SCORE=0.3249 POISSON_Pcnt=68 GSM=GSM670032 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K9ac_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K9ac_112.bigWig shortLabel BHM H3K9ac 12 longLabel Brain Hippocampus Middle H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2257 Pcnt=48) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,108,0 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2257 HOTSPOT_Pcnt=48 FINDPEAKS_SCORE=0.1722 FINDPEAKS_Pcnt=64 IROC_SCORE=0.9912 IROC_Pcnt=40 POISSON_SCORE=0.3179 POISSON_Pcnt=60 GSM=GSM669906 dateUnrestricted=2011-12-31 track BI_Brain_Inferior_Temporal_Lobe_H3K9ac_112t bigDataUrl BI_Brain_Inferior_Temporal_Lobe_H3K9ac_112.bigWig shortLabel BITL H3K9ac 12 longLabel Brain Inferior Temporal Lobe H3K9ac Signal from REMC/Broad (Hotspot_Score=0.232 Pcnt=64) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,102,0 metadata sample_alias=176 sample_common_name="Brain, Inferior Temporal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Inferior Temporal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.232 HOTSPOT_Pcnt=64 FINDPEAKS_SCORE=0.1726 FINDPEAKS_Pcnt=68 IROC_SCORE=0.9891 IROC_Pcnt=28 POISSON_SCORE=0.3156 POISSON_Pcnt=56 GSM=GSM669918 dateUnrestricted=2011-12-31 track BI_Brain_Mid_Frontal_Lobe_H3K9ac_112t bigDataUrl BI_Brain_Mid_Frontal_Lobe_H3K9ac_112.bigWig shortLabel BMFL H3K9ac 12 longLabel Brain Mid Frontal Lobe H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1811 Pcnt=28) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,96,0 metadata sample_alias=174 sample_common_name="Brain, Mid Frontal Lobe" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Mid Frontal Lobe" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1811 HOTSPOT_Pcnt=28 FINDPEAKS_SCORE=0.1223 FINDPEAKS_Pcnt=28 IROC_SCORE=0.9871 IROC_Pcnt=8 POISSON_SCORE=0.2746 POISSON_Pcnt=28 GSM=GSM670021 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K9ac_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K9ac_112.bigWig shortLabel BSN H3K9ac 12 longLabel Brain Substantia Nigra H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2078 Pcnt=36) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,90,0 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2078 HOTSPOT_Pcnt=36 FINDPEAKS_SCORE=0.1534 FINDPEAKS_Pcnt=44 IROC_SCORE=0.9887 IROC_Pcnt=20 POISSON_SCORE=0.2985 POISSON_Pcnt=48 GSM=GSM669977 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_57.bigWig shortLabel CfBMDMSC H3K9ac 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4024 Pcnt=88) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,84,0 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4024 HOTSPOT_Pcnt=88 FINDPEAKS_SCORE=0.3625 FINDPEAKS_Pcnt=84 IROC_SCORE=0.9899 IROC_Pcnt=32 POISSON_SCORE=0.4566 POISSON_Pcnt=92 GSM=GSM669917 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K9ac_59.bigWig shortLabel CfBMDMSC H3K9ac 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3063 Pcnt=72) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,78,0 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3063 HOTSPOT_Pcnt=72 FINDPEAKS_SCORE=0.2527 FINDPEAKS_Pcnt=72 IROC_SCORE=0.9944 IROC_Pcnt=60 POISSON_SCORE=0.3743 POISSON_Pcnt=76 GSM=GSM670030 dateUnrestricted=2011-12-31 track BI_HUES48_H3K9act bigDataUrl BI_HUES48_H3K9ac.bigWig shortLabel HUES48 H3K9ac Ac longLabel HUES48 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.181 Pcnt=24) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,72,0 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.181 HOTSPOT_Pcnt=24 FINDPEAKS_SCORE=0.1216 FINDPEAKS_Pcnt=24 IROC_SCORE=0.998 IROC_Pcnt=92 POISSON_SCORE=0.2059 POISSON_Pcnt=12 GSM=GSM670013 dateUnrestricted=2011-12-31 track BI_HUES64_H3K9act bigDataUrl BI_HUES64_H3K9ac.bigWig shortLabel HUES64 H3K9ac Ac longLabel HUES64 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.2265 Pcnt=52) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,66,0 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2265 HOTSPOT_Pcnt=52 FINDPEAKS_SCORE=0.1559 FINDPEAKS_Pcnt=48 IROC_SCORE=0.9947 IROC_Pcnt=64 POISSON_SCORE=0.2795 POISSON_Pcnt=32 GSM=GSM669963 dateUnrestricted=2011-12-31 track BI_HUES6_H3K9ac_12t bigDataUrl BI_HUES6_H3K9ac_12.bigWig shortLabel HUES6 H3K9ac longLabel HUES6 H3K9ac Signal from REMC/Broad (Hotspot_Score=0.4163 Pcnt=92) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,60,0 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.4163 HOTSPOT_Pcnt=92 FINDPEAKS_SCORE=0.361 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9924 IROC_Pcnt=48 POISSON_SCORE=0.4477 POISSON_Pcnt=88 GSM=GSM669890 dateUnrestricted=2011-12-31 track BI_Rectal_Mucosa_H3K9ac_31t bigDataUrl BI_Rectal_Mucosa_H3K9ac_31.bigWig shortLabel RM H3K9ac 31 longLabel Rectal Mucosa H3K9ac Signal from REMC/Broad (Hotspot_Score=0.3374 Pcnt=76) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,54,0 metadata sample_alias=40 sample_common_name="Rectal Mucosa" collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3374 HOTSPOT_Pcnt=76 FINDPEAKS_SCORE=0.2896 FINDPEAKS_Pcnt=76 IROC_SCORE=0.9975 IROC_Pcnt=88 POISSON_SCORE=0.3741 POISSON_Pcnt=72 GSM=GSM669949 dateUnrestricted=2011-12-31 track BI_Stomach_Smooth_Muscle_H3K9ac_28t bigDataUrl BI_Stomach_Smooth_Muscle_H3K9ac_28.bigWig shortLabel SSM H3K9ac 28 longLabel Stomach Smooth Muscle H3K9ac Signal from REMC/Broad (Hotspot_Score=0.1402 Pcnt=12) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,48,0 metadata sample_alias=37 sample_common_name="Stomach Smooth Muscle" collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1402 HOTSPOT_Pcnt=12 FINDPEAKS_SCORE=0.1022 FINDPEAKS_Pcnt=12 IROC_SCORE=0.9959 IROC_Pcnt=76 POISSON_SCORE=0.204 POISSON_Pcnt=8 GSM=GSM669921 dateUnrestricted=2011-12-31 track BI_ESWA7_H3K9act bigDataUrl BI_ESWA7_H3K9ac.bigWig shortLabel ESWA7 H3K9ac longLabel ES-WA7 H3K9ac Lib MC 20100818 06--ChIP MC 20100816 Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3H3K9ac color 0,42,0 metadata sample alias=58 sample common name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=WA07-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor GSM=GSM669896 dateUnrestricted=2011-12-31 GSM=GSM669896 dateUnrestricted=2011-12-31 track UCSD_H9_H3K9ac_AK35t bigDataUrl UCSD_H9_H3K9ac_AK35.bigWig shortLabel H9 H3K9ac 35 longLabel H9 H3K9ac Signal from REMC/UCSD (Hotspot_Score=0.1388 Pcnt=8) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,36,0 metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="250 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=39137 chip_antibody_lot=1008001 Hotspot_Score=0.1388 HOTSPOT_Pcnt=8 FINDPEAKS_SCORE=0.0282 FINDPEAKS_Pcnt=4 IROC_SCORE=0.631 IROC_Pcnt=4 POISSON_SCORE=0.2166 POISSON_Pcnt=16 GSM=GSM616129 dateUnrestricted=2011-12-23 track UCSFUBC_Fetal_Brain_H3K9ac_HuFNSCTt bigDataUrl UCSFUBC_Fetal_Brain_H3K9ac_HuFNSCT.bigWig shortLabel FB H3K9ac T longLabel Fetal Brain H3K9ac Signal from REMC/UCSF-UBC (Hotspot_Score=0.1731 Pcnt=20) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,30,0 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=76-355bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1731 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.1226 FINDPEAKS_Pcnt=32 IROC_SCORE=0.9952 IROC_Pcnt=72 POISSON_SCORE=0.2807 POISSON_Pcnt=36 GSM=GSM669623 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K9ac_skin01t bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K9ac_skin01.bigWig shortLabel PFK H3K9ac 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K9ac Signal from REMC/UCSF-UBC (Hotspot_Score=0.5496 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K9ac color 0,24,0 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=129-502bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649 chip_antibody_lot=1 Hotspot_Score=0.5496 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.6066 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9915 IROC_Pcnt=44 POISSON_SCORE=0.6811 POISSON_Pcnt=100 GSM=GSM669590 dateUnrestricted=2011-12-31 track containeredacc3MRE container multiWig superTrack edacc3ContainerbyExperiment shortLabel MRE-Seq Summary longLabel Epigenome Atlas Release III MRE-Seq Summary for 7 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009t bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009.bigWig shortLabel CD4M MRE 09 longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 152,251,152 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-279bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.57 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=14 GSM=GSM669599 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MRE_HuFNSC01t bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC01.bigWig shortLabel FB MRE 01 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 132,251,152 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=27-281bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.64 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=29 GSM=GSM669604 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MRE_HuFNSC02t bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC02.bigWig shortLabel FB MRE 02 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 112,251,152 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=31-267bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.66 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=43 GSM=GSM669605 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC01t bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC01.bigWig shortLabel NCD MRE 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 92,251,152 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-272bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.8 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=100 GSM=GSM669600 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC02t bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC02.bigWig shortLabel NCD MRE 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 72,251,152 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=20-276bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.73 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=86 GSM=GSM669602 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC01t bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC01.bigWig shortLabel NGED MRE 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 52,251,152 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=37-278bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.71 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=57 GSM=GSM669601 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC02t bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC02.bigWig shortLabel NGED MRE 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containeredacc3MRE color 32,251,152 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-253bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.72 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=71 GSM=GSM669603 dateUnrestricted=2011-12-31 track containeredacc3H3K79me2 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K79me2 Summary longLabel Epigenome Atlas Release III H3K79me2 Summary for 1 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H3K79me2_SK190t bigDataUrl UCSD_H9_H3K79me2_SK190.bigWig shortLabel H9 H3K79me2 90 longLabel H9 H3K79me2 Signal from REMC/UCSD (Hotspot_Score=0.2115 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K79me2 color 200,200,0 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.2115 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.1654 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9826 IROC_Pcnt=100 POISSON_SCORE=0.3066 POISSON_Pcnt=100 GSM=GSM667630 dateUnrestricted=2011-11-15 track containeredacc3H3K27me3 container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K27me3 Summary longLabel Epigenome Atlas Release III H3K27me3 Summary for 20 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adipose_Nuclei_H3K27me3_92t bigDataUrl BI_Adipose_Nuclei_H3K27me3_92.bigWig shortLabel AN H3K27me3 92 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1136 Pcnt=30) type bigWig 0 90000 parent containeredacc3H3K27me3 color 255,182,193 metadata sample_alias=140 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=92 biomaterial_provider="Harvard University" donor_age=59 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1136 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.0296 FINDPEAKS_Pcnt=30 IROC_SCORE=0.776 IROC_Pcnt=10 POISSON_SCORE=0.2993 POISSON_Pcnt=35 GSM=GSM669930 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K27me3_94t bigDataUrl BI_Adipose_Nuclei_H3K27me3_94.bigWig shortLabel AN H3K27me3 94 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1599 Pcnt=55) type bigWig 0 90000 parent containeredacc3H3K27me3 color 243,182,193 metadata sample_alias=142 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=94 biomaterial_provider="Harvard University" donor_age=25 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1599 HOTSPOT_Pcnt=55 FINDPEAKS_SCORE=0.0611 FINDPEAKS_Pcnt=40 IROC_SCORE=0.8496 IROC_Pcnt=35 POISSON_SCORE=0.3715 POISSON_Pcnt=65 GSM=GSM670035 dateUnrestricted=2011-12-31 track BI_Adipose_Nuclei_H3K27me3_95t bigDataUrl BI_Adipose_Nuclei_H3K27me3_95.bigWig shortLabel AN H3K27me3 95 longLabel Adipose Nuclei H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1503 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K27me3 color 231,182,193 metadata sample_alias=143 sample_common_name="Adipose Nuclei" collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=95 biomaterial_provider="Harvard University" donor_age=81 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1503 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0622 FINDPEAKS_Pcnt=45 IROC_SCORE=0.8528 IROC_Pcnt=40 POISSON_SCORE=0.383 POISSON_Pcnt=70 GSM=GSM670017 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_58t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_58.bigWig shortLabel BMDMSC H3K27me3 58 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1976 Pcnt=60) type bigWig 0 90000 parent containeredacc3H3K27me3 color 219,182,193 metadata sample_alias=76B sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=58 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1976 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.1132 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9079 IROC_Pcnt=55 POISSON_SCORE=0.4547 POISSON_Pcnt=80 GSM=GSM670009 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59.bigWig shortLabel BMDMSC H3K27me3 59 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1422 Pcnt=40) type bigWig 0 90000 parent containeredacc3H3K27me3 color 207,182,193 metadata sample_alias=77 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1422 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0632 FINDPEAKS_Pcnt=50 IROC_SCORE=0.8697 IROC_Pcnt=45 POISSON_SCORE=0.3512 POISSON_Pcnt=50 GSM=GSM670007 dateUnrestricted=2011-12-31 track BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_60t bigDataUrl BI_Bone_Marrow_Derived_Mesenchymal_H3K27me3_60.bigWig shortLabel BMDMSC H3K27me3 60 longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1304 Pcnt=35) type bigWig 0 90000 parent containeredacc3H3K27me3 color 195,182,193 metadata sample_alias=78 sample_common_name="Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=60 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1304 HOTSPOT_Pcnt=35 FINDPEAKS_SCORE=0.0488 FINDPEAKS_Pcnt=35 IROC_SCORE=0.8416 IROC_Pcnt=30 POISSON_SCORE=0.3433 POISSON_Pcnt=45 GSM=GSM669957 dateUnrestricted=2011-12-31 track BI_Brain_Anterior_Caudate_H3K27me3_112t bigDataUrl BI_Brain_Anterior_Caudate_H3K27me3_112.bigWig shortLabel BAC H3K27me3 12 longLabel Brain Anterior Caudate H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0409 Pcnt=5) type bigWig 0 90000 parent containeredacc3H3K27me3 color 183,182,193 metadata sample_alias=173 sample_common_name="Brain, Anterior Caudate" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Anterior Caudate" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0409 HOTSPOT_Pcnt=5 FINDPEAKS_SCORE=0.0085 FINDPEAKS_Pcnt=10 IROC_SCORE=0.8331 IROC_Pcnt=25 POISSON_SCORE=0.1575 POISSON_Pcnt=10 GSM=GSM669915 dateUnrestricted=2011-12-31 track BI_Brain_Hippocampus_Middle_H3K27me3_112t bigDataUrl BI_Brain_Hippocampus_Middle_H3K27me3_112.bigWig shortLabel BHM H3K27me3 12 longLabel Brain Hippocampus Middle H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0628 Pcnt=15) type bigWig 0 90000 parent containeredacc3H3K27me3 color 171,182,193 metadata sample_alias=172 sample_common_name="Brain, Hippocampus Middle" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Hippocampus Middle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0628 HOTSPOT_Pcnt=15 FINDPEAKS_SCORE=0.0101 FINDPEAKS_Pcnt=15 IROC_SCORE=0.7857 IROC_Pcnt=15 POISSON_SCORE=0.1723 POISSON_Pcnt=25 GSM=GSM669913 dateUnrestricted=2011-12-31 track BI_Brain_Substantia_Nigra_H3K27me3_112t bigDataUrl BI_Brain_Substantia_Nigra_H3K27me3_112.bigWig shortLabel BSN H3K27me3 12 longLabel Brain Substantia Nigra H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.0432 Pcnt=10) type bigWig 0 90000 parent containeredacc3H3K27me3 color 159,182,193 metadata sample_alias=171 sample_common_name="Brain, Substantia Nigra" collection_method=post-mortem donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Substantia Nigra" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=brain donor_id=112 biomaterial_provider="Rush University Medical Center" donor_age=75 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0432 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0066 FINDPEAKS_Pcnt=5 IROC_SCORE=0.8099 IROC_Pcnt=20 POISSON_SCORE=0.1401 POISSON_Pcnt=5 GSM=GSM669953 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_57t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_57.bigWig shortLabel CfBMDMSC H3K27me3 57 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1991 Pcnt=65) type bigWig 0 90000 parent containeredacc3H3K27me3 color 147,182,193 metadata sample_alias=79 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1991 HOTSPOT_Pcnt=65 FINDPEAKS_SCORE=0.1222 FINDPEAKS_Pcnt=70 IROC_SCORE=0.9156 IROC_Pcnt=65 POISSON_SCORE=0.4823 POISSON_Pcnt=85 GSM=GSM669959 dateUnrestricted=2011-12-31 track BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59t bigDataUrl BI_Chondrocytes_Bone_Marrow_Derived_Mesenchymal_H3K27me3_59.bigWig shortLabel CfBMDMSC H3K27me3 59 longLabel Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=75) type bigWig 0 90000 parent containeredacc3H3K27me3 color 135,182,193 metadata sample_alias=81 sample_common_name="Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=NA cell_type="chondrogenic dif cells" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell Culture" donor_id=59 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.214 HOTSPOT_Pcnt=75 FINDPEAKS_SCORE=0.1474 FINDPEAKS_Pcnt=75 IROC_SCORE=0.927 IROC_Pcnt=75 POISSON_SCORE=0.5054 POISSON_Pcnt=95 GSM=GSM669916 dateUnrestricted=2011-12-31 track BI_HUES48_H3K27me3t bigDataUrl BI_HUES48_H3K27me3.bigWig shortLabel HUES48 H3K27me3 e3 longLabel HUES48 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.299 Pcnt=80) type bigWig 0 90000 parent containeredacc3H3K27me3 color 123,182,193 metadata sample_alias=197 sample_common_name="HUES48 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES48 differentiation_method=NA batch="ES cell HUES_48-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.299 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.2722 FINDPEAKS_Pcnt=85 IROC_SCORE=0.9981 IROC_Pcnt=100 POISSON_SCORE=0.355 POISSON_Pcnt=55 GSM=GSM669942 dateUnrestricted=2011-12-31 track BI_HUES64_H3K27me3t bigDataUrl BI_HUES64_H3K27me3.bigWig shortLabel HUES64 H3K27me3 e3 longLabel HUES64 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.4804 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K27me3 color 111,182,193 metadata sample_alias=196 sample_common_name="HUES64 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line=HUES64 differentiation_method=NA batch="ES cell HUES_64-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4804 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.4448 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9883 IROC_Pcnt=95 POISSON_SCORE=0.5114 POISSON_Pcnt=100 GSM=GSM669974 dateUnrestricted=2011-12-31 track BI_HUES6_H3K27me3_04t bigDataUrl BI_HUES6_H3K27me3_04.bigWig shortLabel HUES6 H3K27me3 longLabel HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3435 Pcnt=90) type bigWig 0 90000 parent containeredacc3H3K27me3 color 99,182,193 metadata sample alias=199 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3435 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.3046 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9646 IROC_Pcnt=85 POISSON_SCORE=0.451 POISSON_Pcnt=75 GSM=GSM669887 dateUnrestricted=2011-12-31 track BI_HUES6_H3K27me3_11t bigDataUrl BI_HUES6_H3K27me3_11.bigWig shortLabel HUES6 H3K27me3 longLabel HUES6 H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.3981 Pcnt=95) type bigWig 0 90000 parent containeredacc3H3K27me3 color 87,182,193 metadata sample alias=207 sample common name="HUES6 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=NA line="HUES 6" differentiation_method=NA batch="ES cell HUES_6-2" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Unknown biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor HOTSPOT_SCORE=0.3981 HOTSPOT_Pcnt=95 FINDPEAKS_SCORE=0.3693 FINDPEAKS_Pcnt=95 IROC_SCORE=0.9772 IROC_Pcnt=90 POISSON_SCORE=0.5 POISSON_Pcnt=90 GSM=GSM669897 dateUnrestricted=2011-12-31 track BI_Mobilized_CD34_Primary_Cells_H3K27me3t bigDataUrl BI_Mobilized_CD34_Primary_Cells_H3K27me3.bigWig shortLabel MCD34 H3K27me3 80 longLabel Mobilized CD34 Primary Cells H3K27me3 Signal from REMC/Broad (Hotspot_Score=0.1454 Pcnt=45) type bigWig 0 90000 parent containeredacc3H3K27me3 color 75,182,193 metadata sample_alias="UW DS # 12771" sample_common_name="Mobilized CD34 Primary Cells" donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Upstate chip_antibody_lot=dam151401 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1454 HOTSPOT_Pcnt=45 FINDPEAKS_SCORE=0.0752 FINDPEAKS_Pcnt=55 IROC_SCORE=0.9259 IROC_Pcnt=70 POISSON_SCORE=0.2635 POISSON_Pcnt=30 GSM=GSM669945 dateUnrestricted=2011-12-31 track UCSD_H9_H3K27me3_SK99t bigDataUrl UCSD_H9_H3K27me3_SK99.bigWig shortLabel H9 H3K27me3 99 longLabel H9 H3K27me3 Signal from REMC/UCSD (Hotspot_Score=0.3339 Pcnt=85) type bigWig 0 90000 parent containeredacc3H3K27me3 color 63,182,193 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot="DAM 1612188" Hotspot_Score=0.3339 HOTSPOT_Pcnt=85 FINDPEAKS_SCORE=0.2484 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9276 IROC_Pcnt=80 POISSON_SCORE=0.3684 POISSON_Pcnt=60 GSM=GSM667622 dateUnrestricted=2011-11-15 track UCSFUBC_Breast_HMEC_H3K27me3_RM035t bigDataUrl UCSFUBC_Breast_HMEC_H3K27me3_RM035.bigWig shortLabel Bv H3K27me3 35 longLabel Breast vHMEC H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.21 Pcnt=70) type bigWig 0 90000 parent containeredacc3H3K27me3 color 51,182,193 metadata sample_alias="Breast vHMEC RM035" sample_common_name="Breast, vHMEC" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=4ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=221-550bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.21 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.121 FINDPEAKS_Pcnt=65 IROC_SCORE=0.9148 IROC_Pcnt=60 POISSON_SCORE=0.3151 POISSON_Pcnt=40 GSM=GSM669594 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_H3K27me3_HuFNSCTt bigDataUrl UCSFUBC_Fetal_Brain_H3K27me3_HuFNSCT.bigWig shortLabel FB H3K27me3 T longLabel Fetal Brain H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.088 Pcnt=25) type bigWig 0 90000 parent containeredacc3H3K27me3 color 39,182,193 metadata sample_alias="Brain Dorsal neocortex HuFNSC03" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon/Harvard" biomaterial_type="Primary Cell Culture" culture_conditions=na cell_type=Brain markers=NA culture_conditions= donor_id=HuFNSC-T donor_age=15gw donor_health_status="Disease Free" donor_sex=Unknown donor_ethnicity=na passage_if_expanded=5 karyotype= parity=NA experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G magnetic" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=NA size_fraction=36-312bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=1 Hotspot_Score=0.088 HOTSPOT_Pcnt=25 FINDPEAKS_SCORE=0.0269 FINDPEAKS_Pcnt=25 IROC_SCORE=0.8947 IROC_Pcnt=50 POISSON_SCORE=0.1606 POISSON_Pcnt=15 GSM=GSM669625 dateUnrestricted=2011-12-31 track UCSFUBC_Penis_Foreskin_Keratinocyte_H3K27me3_skin01t bigDataUrl UCSFUBC_Penis_Foreskin_Keratinocyte_H3K27me3_skin01.bigWig shortLabel PFK H3K27me3 01 longLabel Penis Foreskin Keratinocyte Primary Cells H3K27me3 Signal from REMC/UCSF-UBC (Hotspot_Score=0.0676 Pcnt=20) type bigWig 0 90000 parent containeredacc3H3K27me3 color 27,182,193 metadata sample_alias="Penis, Foreskin, Keratinocyte skin01" sample_common_name="Penis, Foreskin, Keratinocyte Primary Cells" disease=None biomaterial_provider="SFVAMC Dermatology" biomaterial_type="Primary Cell Culture" cell_type=Keratinocyte markers=NA culture_conditions="Invitrogen 154CF + HKGS + .07mM Ca" donor_id=skin01 donor_age=Neonate donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=NA passage_if_expanded=2 karyotype="46, XY" parity=NA experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=20min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein A/G magnetic" chip_protocol_bead_amount=30ul chip_protocol_antibody_amount=NA size_fraction=85-574bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733 chip_antibody_lot=2 Hotspot_Score=0.0676 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0102 FINDPEAKS_Pcnt=20 IROC_SCORE=0.5027 IROC_Pcnt=5 POISSON_SCORE=0.161 POISSON_Pcnt=20 GSM=GSM669592 dateUnrestricted=2011-12-31 track containeredacc3H4K5ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H4K5ac Summary longLabel Epigenome Atlas Release III H4K5ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H9_H4K5ac_SK282t bigDataUrl UCSD_H9_H4K5ac_SK282.bigWig shortLabel H9 H4K5ac 82 longLabel H9 H4K5ac Signal from REMC/UCSD (Hotspot_Score=0.1016 Pcnt=50) type bigWig 0 90000 parent containeredacc3H4K5ac color 200,0,200 metadata sample_alias=H9-02 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Millipore chip_antibody_catalog=07-327 chip_antibody_lot="DAM 1641101" Hotspot_Score=0.1016 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0134 FINDPEAKS_Pcnt=50 IROC_SCORE=0.0 IROC_Pcnt=0 POISSON_SCORE=0.2344 POISSON_Pcnt=50 GSM=GSM667636 dateUnrestricted=2011-12-23 track UCSD_H9_H4K5ac_YL240t bigDataUrl UCSD_H9_H4K5ac_YL240.bigWig shortLabel H9 H4K5ac 40 longLabel H9 H4K5ac Signal from REMC/UCSD (Hotspot_Score=0.15 Pcnt=100) type bigWig 0 90000 parent containeredacc3H4K5ac color 105,0,200 metadata sample_alias=H9-01 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=up07-327 chip_antibody_lot=30417 Hotspot_Score=0.15 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0302 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6856 IROC_Pcnt=100 POISSON_SCORE=0.2578 POISSON_Pcnt=100 GSM=GSM667635 dateUnrestricted=2011-11-15 track containeredacc3RRBS container multiWig superTrack edacc3ContainerbyExperiment shortLabel RRBS Summary longLabel Epigenome Atlas Release III RRBS Summary for 27 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track BI_Adult_Kidney_RRBS_27t bigDataUrl BI_Adult_Kidney_RRBS_27.bigWig shortLabel AK RRBS 27 longLabel Adult Kidney DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 255,193,193 metadata sample_alias=36 sample_common_name="Adult Kidney" collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=150-420 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-300 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.53 GSM=GSM670086 dateUnrestricted=2011-12-31 track BI_ESWA7_RRBS_RRBS528_529t bigDataUrl BI_ESWA7_RRBS_RRBS528_529.bigWig shortLabel ESWA7 RRBS 28 longLabel ES-WA7 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 246,193,193 metadata sample_alias=WA-7 sample_common_name="ES-WA7 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=46 line=WA-7 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.80 GSM=GSM669902 dateUnrestricted=2011-12-31 track BI_H1_Derived_Embryoid_Body_RRBS_RRBS792_793t bigDataUrl BI_H1_Derived_Embryoid_Body_RRBS_RRBS792_793.bigWig shortLabel H1DEB RRBS 92 longLabel H1 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 237,193,193 metadata sample_alias=hEB16d_H1_p38 sample_common_name="H1 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=38 cell_type="H1p38 EB_d16" donor_ethnicity=unknown donor_sex=Male biomaterial_type="Primary Cell Culture" donor_id="Donor of H1 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.83 GSM=GSM670052 dateUnrestricted=2011-12-31 track BI_H9_Derived_Embryoid_Body_RRBS794_795t bigDataUrl BI_H9_Derived_Embryoid_Body_RRBS794_795.bigWig shortLabel H9DEB RRBS 94 longLabel H9 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 228,193,193 metadata sample_alias="H9p65 EB_d16" sample_common_name="H9 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=65 cell_type="H9p65 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of H9 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.14 GSM=GSM670054 dateUnrestricted=2011-12-31 track BI_H9_Derived_Neuronal_Progenitor_RRBS956_957t bigDataUrl BI_H9_Derived_Neuronal_Progenitor_RRBS956_957.bigWig shortLabel HDNP RRBS 56 longLabel H9 Derived Neuronal Progenitor Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 219,193,193 metadata sample_alias="Neural progenitors derived from ES H9 cell" sample_common_name="H9 Derived Neuronal Progenitor Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=">90% nestin(+) and <5% Oct-4(+)" culture_conditions=Medium passage_if_expanded=NA cell_type="Neural progenitors derived from ES H9 cell" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of H9 cells" biomaterial_provider="ArunA Biomedical, Athens, GA" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-370 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.79 GSM=GSM669900 dateUnrestricted=2011-12-31 track BI_H9_RRBS_RRBS747_748t bigDataUrl BI_H9_RRBS_RRBS747_748.bigWig shortLabel H9 RRBS 47 longLabel H9 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 210,193,193 metadata sample_alias=hES_H9_p58 sample_common_name="H9 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=58 line=H9 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.9 GSM=GSM669903 dateUnrestricted=2011-12-31 track BI_HUES13_RRBS_RRBS749_750t bigDataUrl BI_HUES13_RRBS_RRBS749_750.bigWig shortLabel HUES13 RRBS 49 longLabel HUES13 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 201,193,193 metadata sample_alias=hES_HUES13_p47 sample_common_name="HUES13 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=47 line=HUES13 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-130 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.23 GSM=GSM670087 dateUnrestricted=2011-12-31 track BI_HUES1_Derived_Embryoid_Body_RRBS780_781t bigDataUrl BI_HUES1_Derived_Embryoid_Body_RRBS780_781.bigWig shortLabel HU1DEB RRBS 80 longLabel HUES1 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 192,193,193 metadata sample_alias=hEB16d_HUES1_p29 sample_common_name="HUES1 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=29 cell_type="HUES_1p29 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES1 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.47 GSM=GSM670078 dateUnrestricted=2011-12-31 track BI_HUES3_Derived_Embryoid_Body_RRBS782_783t bigDataUrl BI_HUES3_Derived_Embryoid_Body_RRBS782_783.bigWig shortLabel HU3DEB RRBS 82 longLabel HUES3 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 183,193,193 metadata sample_alias=hEB16d_HUES3_p22 sample_common_name="HUES3 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=22 cell_type="HUES_3p22 EB_d16" donor_ethnicity=unknown donor_sex=Male biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES3 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.39 GSM=GSM670076 dateUnrestricted=2011-12-31 track BI_HUES44_RRBS_RRBS544_545t bigDataUrl BI_HUES44_RRBS_RRBS544_545.bigWig shortLabel HUES44 RRBS 44 longLabel HUES44 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 174,193,193 metadata sample_alias=hES_HUES44_p18 sample_common_name="HUES44 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=18 line=HUES44 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.79 GSM=GSM670089 dateUnrestricted=2011-12-31 track BI_HUES45_Derived_Embryoid_Body_RRBS788_789t bigDataUrl BI_HUES45_Derived_Embryoid_Body_RRBS788_789.bigWig shortLabel HU45DEB RRBS 88 longLabel HUES45 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 165,193,193 metadata sample_alias=hEB16d_HUES45_p21 sample_common_name="HUES45 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=21 cell_type="HUES_45p21 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES45 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.33 GSM=GSM670084 dateUnrestricted=2011-12-31 track BI_HUES45_RRBS_RRBS546_547t bigDataUrl BI_HUES45_RRBS_RRBS546_547.bigWig shortLabel HUES45 RRBS 46 longLabel HUES45 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 156,193,193 metadata sample_alias=hES_HUES45_p20 sample_common_name="HUES45 Cell Line" lineage="embrionic stem cell" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=20 line=HUES45 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.92 GSM=GSM670091 dateUnrestricted=2011-12-31 track BI_HUES66_RRBS_RRBS941t bigDataUrl BI_HUES66_RRBS_RRBS941.bigWig shortLabel HUES66 RRBS 41 longLabel HUES66 DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 147,193,193 metadata sample_alias=hES_HUES66_p20 sample_common_name="HUES66 Cell Line" lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p20 line=HUES66 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=240-360 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=120-240 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.35 GSM=GSM670049 dateUnrestricted=2011-12-31 track BI_HUES6_Derived_Embryoid_Body_RRBS784_785t bigDataUrl BI_HUES6_Derived_Embryoid_Body_RRBS784_785.bigWig shortLabel HU6DEB RRBS 84 longLabel HUES6 Derived Embryoid Body Cultured Cells DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 138,193,193 metadata sample_alias=hEB16d_HUES6_p30 sample_common_name="HUES6 Derived Embryoid Body Cultured Cells" donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA culture_conditions=Medium passage_if_expanded=30 cell_type="HUES_6p30 EB_d16" donor_ethnicity=unknown donor_sex=Female biomaterial_type="Primary Cell Culture" donor_id="Donor of HUES6 cells" biomaterial_provider="Harvard University" donor_age=unknown bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-300 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-180 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.51 GSM=GSM670080 dateUnrestricted=2011-12-31 track BI_iPS11c_RRBS_RRBS832_833t bigDataUrl BI_iPS11c_RRBS_RRBS832_833.bigWig shortLabel iPS11c RRBS 32 longLabel iPS-11c DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 129,193,193 metadata sample_alias=hiPS_11c_p23 sample_common_name="iPS-11c Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=23 line="hESC 11c p23" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.0 GSM=GSM670074 dateUnrestricted=2011-12-31 track BI_iPS17b_RRBS_RRBS751_752t bigDataUrl BI_iPS17b_RRBS_RRBS751_752.bigWig shortLabel iPS17b RRBS 51 longLabel iPS-17b DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 120,193,193 metadata sample_alias=hiPS_17b_p32 sample_common_name="iPS-17b Cell Line" lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.24 GSM=GSM670067 dateUnrestricted=2011-12-31 track BI_iPS17b_RRBS_RRBS753_754t bigDataUrl BI_iPS17b_RRBS_RRBS753_754.bigWig shortLabel iPS17b RRBS 53 longLabel iPS-17b DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 111,193,193 metadata sample_alias=hiPS_17b_p32 sample_common_name="iPS-17b Cell Line" lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=160-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-130 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.93 GSM=GSM670068 dateUnrestricted=2011-12-31 track BI_iPS20b_RRBS_RRBS796_797t bigDataUrl BI_iPS20b_RRBS_RRBS796_797.bigWig shortLabel iPS20b RRBS 96 longLabel iPS-20b DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 102,193,193 metadata sample_alias="hiPS_20b p49 KOSR iPS" sample_common_name="iPS-20b Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=49 line="hiPS_20b p49 KOSR iPS" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.12 GSM=GSM670056 dateUnrestricted=2011-12-31 track BI_iPS20b_RRBS_RRBS798_799t bigDataUrl BI_iPS20b_RRBS_RRBS798_799.bigWig shortLabel iPS20b RRBS 98 longLabel iPS-20b DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 93,193,193 metadata sample_alias="hiPS_20b p49 TeSR iPS" sample_common_name="iPS-20b Cell Line" lineage="induced pluripotent cells" medium=TeSR molecule="genomic DNA" disease=none passage=49 line="hiPS_20b p49 TeSR iPS" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=220-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=100-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.47 GSM=GSM670058 dateUnrestricted=2011-12-31 track BI_iPS27b_RRBS_RRBS593_594t bigDataUrl BI_iPS27b_RRBS_RRBS593_594.bigWig shortLabel iPS27b RRBS 93 longLabel iPS-27b DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 84,193,193 metadata sample_alias=hiPS_27b_p31 sample_common_name="iPS-27b Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=31 line=hiPS-27b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=120-240 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-150 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.07 GSM=GSM670072 dateUnrestricted=2011-12-31 track BI_iPS27e_RRBS_RRBS755_756t bigDataUrl BI_iPS27e_RRBS_RRBS755_756.bigWig shortLabel iPS27e RRBS 55 longLabel iPS-27e DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 75,193,193 metadata sample_alias=hiPS_27e_p32 sample_common_name="iPS-27e Cell Line" lineage="induced pluripotent cells" medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=32 line=hiPS27 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=190-400 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=70-280 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.02 GSM=GSM670064 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS422423t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS422423.bigWig shortLabel PF RRBS 22 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 66,193,193 metadata sample_alias=hFib_18_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line="19 Fib" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.51 GSM=GSM670082 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS510511t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS510511.bigWig shortLabel PF RRBS 10 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 57,193,193 metadata sample_alias=hFib_20_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line="Fib 20" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.38 GSM=GSM670085 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS530531t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS530531.bigWig shortLabel PF RRBS 30 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 48,193,193 metadata sample_alias=hFib_15_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib15 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.16 GSM=GSM670061 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS576577t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS576577.bigWig shortLabel PF RRBS 76 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 39,193,193 metadata sample_alias=hFib_11_p8 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=8 line=Fib11 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.39 GSM=GSM670048 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS578579t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS578579.bigWig shortLabel PF RRBS 78 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 30,193,193 metadata sample_alias=hFib_17_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib17 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=98.83 GSM=GSM670059 dateUnrestricted=2011-12-31 track BI_Primary_Fibroblast_RRBS_RRBS595596t bigDataUrl BI_Primary_Fibroblast_RRBS_RRBS595596.bigWig shortLabel PF RRBS 95 longLabel Primary Fibroblast DNA Methylation by RRBS Signal from REMC/Broad type bigWig 0 90000 parent containeredacc3RRBS color 21,193,193 metadata sample_alias=hFib_27_p7 sample_common_name="Primary Fibroblast Cell Line" lineage=mesoderm medium="10% KOSR (Invitrogen)" molecule="genomic DNA" disease=none passage=7 line=Fib27 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=120-240 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=30-150 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS=99.64 GSM=GSM670071 dateUnrestricted=2011-12-31 track containeredacc3H3K4ac container multiWig superTrack edacc3ContainerbyExperiment shortLabel H3K4ac Summary longLabel Epigenome Atlas Release III H3K4ac Summary for 2 sample types type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSD_H1_H3K4ac_AK51t bigDataUrl UCSD_H1_H3K4ac_AK51.bigWig shortLabel H1 H3K4ac 51 longLabel H1 H3K4ac Signal from REMC/UCSD (Hotspot_Score=0.0655 Pcnt=50) type bigWig 0 90000 parent containeredacc3H3K4ac color 255,255,0 metadata sample_alias=H1-10 sample_common_name="H1 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=32 medium=mTeSER Sex=Male batch=H1J5p32 experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.0655 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0046 FINDPEAKS_Pcnt=50 IROC_SCORE=0.769 IROC_Pcnt=100 POISSON_SCORE=0.1684 POISSON_Pcnt=50 GSM=GSM667624 dateUnrestricted=2011-12-23 track UCSD_H9_H3K4ac_SK328t bigDataUrl UCSD_H9_H3K4ac_SK328.bigWig shortLabel H9 H3K4ac 28 longLabel H9 H3K4ac Signal from REMC/UCSD (Hotspot_Score=0.0968 Pcnt=100) type bigWig 0 90000 parent containeredacc3H3K4ac color 133,255,0 metadata sample_alias=H9-03 sample_common_name="H9 Cell Line" molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9-5 experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.0968 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.0076 FINDPEAKS_Pcnt=100 IROC_SCORE=0.6244 IROC_Pcnt=50 POISSON_SCORE=0.2677 POISSON_Pcnt=100 GSM=GSM667625 dateUnrestricted=2011-12-23 track Edacc3ContainerbySample superTrack on shortLabel Methylation Summary longLabel Methylation Summary priority 2 track containerTC009CD4Me container multiWig superTrack Edacc3ContainerbySample shortLabel TC009CD4M Summary longLabel Epigenome Atlas Release 3 TC009CD4Memory Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 10 track UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009d bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4M MeDIP 09 longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2001 Pcnt=30 ) type bigWig 0 90000 parent containerTC009CD4Me color 100,0,0 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2001 HOTSPOT_Pcnt=30 FINDPEAKS_SCORE=0.0278 FINDPEAKS_Pcnt=30 IROC_SCORE=0.8122 IROC_Pcnt=30 POISSON_SCORE=0.3638 POISSON_Pcnt=30 GSM=GSM669608 dateUnrestricted=2011-12-31 track UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009d bigDataUrl UCSFUBC_CD4_Memory_Primary_Cell_MRE_TC009.bigWig shortLabel CD4M MRE 09 longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerTC009CD4Me color 0,100,0 metadata sample_alias="CD4 Memory TC009" sample_common_name="CD4 Memory Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-279bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.57 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=14 GSM=GSM669599 dateUnrestricted=2011-12-31 track containerTC009CD4Na container multiWig superTrack Edacc3ContainerbySample shortLabel TC009CD4N Summary longLabel Epigenome Atlas Release 3 TC009CD4Naive Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 8 track UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009d bigDataUrl UCSFUBC_CD4_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD4N MeDIP 09 longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1658 Pcnt=20 ) type bigWig 0 90000 parent containerTC009CD4Na color 100,0,0 metadata sample_alias="CD4 Naive TC009" sample_common_name="CD4 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1658 HOTSPOT_Pcnt=20 FINDPEAKS_SCORE=0.0173 FINDPEAKS_Pcnt=20 IROC_SCORE=0.7651 IROC_Pcnt=20 POISSON_SCORE=0.3315 POISSON_Pcnt=20 GSM=GSM669607 dateUnrestricted=2011-12-31 track containerTC009CD8Na container multiWig superTrack Edacc3ContainerbySample shortLabel TC009CD8N Summary longLabel Epigenome Atlas Release 3 TC009CD8Naive Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 9 track UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009d bigDataUrl UCSFUBC_CD8_Naive_Primary_Cell_MeDIP_TC009.bigWig shortLabel CD8N MeDIP 09 longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1546 Pcnt=10 ) type bigWig 0 90000 parent containerTC009CD8Na color 100,0,0 metadata sample_alias="CD8 Naive TC009" sample_common_name="CD8 Naive Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.1546 HOTSPOT_Pcnt=10 FINDPEAKS_SCORE=0.0168 FINDPEAKS_Pcnt=10 IROC_SCORE=0.7574 IROC_Pcnt=10 POISSON_SCORE=0.324 POISSON_Pcnt=10 GSM=GSM669609 dateUnrestricted=2011-12-31 track containerHuFNSC01FB container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC01FB Summary longLabel Epigenome Atlas Release 3 HuFNSC01 Fetal Brain Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 1 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01d bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC01.bigWig shortLabel FB MeDIP 01 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3262 Pcnt=70 ) type bigWig 0 90000 parent containerHuFNSC01FB color 100,0,0 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3262 HOTSPOT_Pcnt=70 FINDPEAKS_SCORE=0.1753 FINDPEAKS_Pcnt=70 IROC_SCORE=0.9291 IROC_Pcnt=70 POISSON_SCORE=0.4466 POISSON_Pcnt=70 GSM=GSM669614 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MRE_HuFNSC01d bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC01.bigWig shortLabel FB MRE 01 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC01FB color 0,100,0 metadata sample_alias="Brain HuFNSC01" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=27-281bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.64 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=29 GSM=GSM669604 dateUnrestricted=2011-12-31 track containerHuFNSC02FB container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC02FB Summary longLabel Epigenome Atlas Release 3 HuFNSC02 Fetal Brain Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 2 track UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02d bigDataUrl UCSFUBC_Fetal_Brain_MeDIP_HuFNSC02.bigWig shortLabel FB MeDIP 02 longLabel Fetal Brain DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4244 Pcnt=100 ) type bigWig 0 90000 parent containerHuFNSC02FB color 100,0,0 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.4244 HOTSPOT_Pcnt=100 FINDPEAKS_SCORE=0.3569 FINDPEAKS_Pcnt=100 IROC_SCORE=0.9634 IROC_Pcnt=100 POISSON_SCORE=0.5016 POISSON_Pcnt=100 GSM=GSM669615 dateUnrestricted=2011-12-31 track UCSFUBC_Fetal_Brain_MRE_HuFNSC02d bigDataUrl UCSFUBC_Fetal_Brain_MRE_HuFNSC02.bigWig shortLabel FB MRE 02 longLabel Fetal Brain DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC02FB color 0,100,0 metadata sample_alias="Brain HuFNSC02" sample_common_name="Fetal Brain" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Tissue" tissue_type=Brain tissue_depot=NA collection_method=NA donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=31-267bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.66 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=43 GSM=GSM669605 dateUnrestricted=2011-12-31 track containerHuFNSC01NCCCD container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC01NCCCD Summary longLabel Epigenome Atlas Release 3 HuFNSC01 Neurosphere Cultured Cells Cortex Derived Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 3 track UCSFUBC_NCCCD_MeDIP_HuFNSC01d bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC01.bigWig shortLabel NCD MeDIP 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2301 Pcnt=40 ) type bigWig 0 90000 parent containerHuFNSC01NCCCD color 100,0,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2301 HOTSPOT_Pcnt=40 FINDPEAKS_SCORE=0.0706 FINDPEAKS_Pcnt=40 IROC_SCORE=0.8839 IROC_Pcnt=50 POISSON_SCORE=0.403 POISSON_Pcnt=50 GSM=GSM669610 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC01d bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC01.bigWig shortLabel NCD MRE 01 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC01NCCCD color 0,100,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-272bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.8 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=100 GSM=GSM669600 dateUnrestricted=2011-12-31 track containerHuFNSC02NCCCD container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC02NCCCD Summary longLabel Epigenome Atlas Release 3 HuFNSC02 Neurosphere Cultured Cells Cortex Derived Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 4 track UCSFUBC_NCCCD_MeDIP_HuFNSC02d bigDataUrl UCSFUBC_NCCCD_MeDIP_HuFNSC02.bigWig shortLabel NCD MeDIP 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3754 Pcnt=90 ) type bigWig 0 90000 parent containerHuFNSC02NCCCD color 100,0,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3754 HOTSPOT_Pcnt=90 FINDPEAKS_SCORE=0.2585 FINDPEAKS_Pcnt=90 IROC_SCORE=0.9538 IROC_Pcnt=90 POISSON_SCORE=0.4854 POISSON_Pcnt=90 GSM=GSM669612 dateUnrestricted=2011-12-31 track UCSFUBC_NCCCD_MRE_HuFNSC02d bigDataUrl UCSFUBC_NCCCD_MRE_HuFNSC02.bigWig shortLabel NCD MRE 02 longLabel Neurosphere Cultured Cells Cortex Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC02NCCCD color 0,100,0 metadata sample_alias="Neurospheres, Cortex Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Cortex Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Cortex Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=2 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=20-276bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.73 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=86 GSM=GSM669602 dateUnrestricted=2011-12-31 track containerHuFNSC01NCCGED container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC01NCCGED Summary longLabel Epigenome Atlas Release 3 HuFNSC01 Neurosphere Cultured Cells Ganglionic Eminence Derived Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 5 track UCSFUBC_NCCGED_MeDIP_HuFNSC01d bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC01.bigWig shortLabel NGED MeDIP 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2684 Pcnt=60 ) type bigWig 0 90000 parent containerHuFNSC01NCCGED color 100,0,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2684 HOTSPOT_Pcnt=60 FINDPEAKS_SCORE=0.1089 FINDPEAKS_Pcnt=60 IROC_SCORE=0.9012 IROC_Pcnt=60 POISSON_SCORE=0.4185 POISSON_Pcnt=60 GSM=GSM669611 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC01d bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC01.bigWig shortLabel NGED MRE 01 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC01NCCGED color 0,100,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC01" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC01 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC02" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=37-278bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.71 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=57 GSM=GSM669601 dateUnrestricted=2011-12-31 track containerHuFNSC02NCCGED container multiWig superTrack Edacc3ContainerbySample shortLabel HuFNSC02NCCGED Summary longLabel Epigenome Atlas Release 3 HuFNSC02 Neurosphere Cultured Cells Ganglionic Eminence Derived Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 6 track UCSFUBC_NCCGED_MeDIP_HuFNSC02d bigDataUrl UCSFUBC_NCCGED_MeDIP_HuFNSC02.bigWig shortLabel NGED MeDIP 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3672 Pcnt=80 ) type bigWig 0 90000 parent containerHuFNSC02NCCGED color 100,0,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.3672 HOTSPOT_Pcnt=80 FINDPEAKS_SCORE=0.2364 FINDPEAKS_Pcnt=80 IROC_SCORE=0.9484 IROC_Pcnt=80 POISSON_SCORE=0.4795 POISSON_Pcnt=80 GSM=GSM669613 dateUnrestricted=2011-12-31 track UCSFUBC_NCCGED_MRE_HuFNSC02d bigDataUrl UCSFUBC_NCCGED_MRE_HuFNSC02.bigWig shortLabel NGED MRE 02 longLabel Neurosphere Cultured Cells Ganglionic Eminence Derived DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC type bigWig 0 90000 parent containerHuFNSC02NCCGED color 0,100,0 metadata sample_alias="Neurospheres, Ganglionic Eminence Derived HuFNSC02" sample_common_name="Neurosphere Cultured Cells, Ganglionic Eminence Derived" disease=None biomaterial_provider="Keith Ligon, Harvard" biomaterial_type="Primary Cell Culture" cell_type="Neurospheres, Ganglionic Eminence Derived" markers=NA culture_conditions=Neurocult+EGF+FGF donor_id=HuFNSC02 donor_age=17GW donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=NA passage_if_expanded=3 karyotype= parity=NA note="Twin of HuFNSC01" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-253bp PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS=99.72 PERCENT_READS_MAPPING_TO_RESTRICTION_FRAGMENTS_PERCENTILE=71 GSM=GSM669603 dateUnrestricted=2011-12-31 track containerTC009PBMPC container multiWig superTrack Edacc3ContainerbySample shortLabel TC009PBMC Summary longLabel Epigenome Atlas Release 3 TC009 Peripheral Blood Mononuclear Primary Cells Summary type bigWig 0 90000 configurable on visibility hide maxHeightPixels 150:30:11 aggregate transparentOverlay showSubtrackColorOnUi on autoScale on windowingFunction mean priority 11 track UCSFUBC_PBMPC_MeDIP_TC009d bigDataUrl UCSFUBC_PBMPC_MeDIP_TC009.bigWig shortLabel PBM MeDIP 09 longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2531 Pcnt=50 ) type bigWig 0 90000 parent containerTC009PBMPC color 100,0,0 metadata sample_alias="PBMC TC009" sample_common_name="Peripheral Blood Mononuclear Primary Cells" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type=n/a medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80808 Hotspot_Score=0.2531 HOTSPOT_Pcnt=50 FINDPEAKS_SCORE=0.0748 FINDPEAKS_Pcnt=50 IROC_SCORE=0.867 IROC_Pcnt=40 POISSON_SCORE=0.3941 POISSON_Pcnt=40 GSM=GSM669606 dateUnrestricted=2011-12-31