track EdaccRelease2UCSDHistone
compositeTrack on
shortLabel UCSD Histone
longLabel Histone Modification by Chip-seq Signal from REMC/UCSD
group edacc2
subGroup1 view Views ALN=Alignments COV=Coverage CG=CpG_Score
subGroup2 sampleType Sample_Type H1=H1 H9=H9 IMR90=IMR90
subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input H4K8ac=H4K8ac H2BK5ac=H2BK5ac H3K23ac=H3K23ac H3K14ac=H3K14ac
subGroup4 donorID Donor/Library DM219=DM219 IMR90-05-I1=IMR90-05-I1 IMR90-06-I1=IMR90-06-I1 IMR90-07-I1=IMR90-07-I1 SAK204=SAK204 LL160=LL160 LL218=LL218 LL220=LL220 LL221=LL221 LL222=LL222 LL223=LL223 LL224=LL224 LL225=LL225 LL227=LL227 LL228=LL228 LL230=LL230 LL231=LL231 LL232=LL232 LL233=LL233 LL234=LL234 LL235=LL235 LL238=LL238 LL239=LL239 LL240=LL240 LL241=LL241 LL311=LL311 LL312=LL312 LL313=LL313 LL314=LL314 LL321=LL321 LL322=LL322 LL323=LL323 LL-H1-I1=LL-H1-I1 LL-H1-I2=LL-H1-I2 LLH1U=LLH1U LL-I1=LL-I1 LL-I2=LL-I2 SAK201=SAK201 SAK202=SAK202 SAK203=SAK203 SAK205=SAK205 SAK206=SAK206 SAK207=SAK207 SAK208=SAK208 SAK210=SAK210 SAK211=SAK211 SAK67=SAK67 SAK68=SAK68 SAK70=SAK70 SAK73=SAK73 SAK80=SAK80 SK03=SK03 SK04=SK04 SK05=SK05 SK06=SK06 SK07=SK07 SK08=SK08 SK09=SK09 SK101=SK101 SK102=SK102 SK11=SK11 SK14=SK14 SK15=SK15 SK16=SK16 SK17=SK17 SK18=SK18 SK198=SK198 SK199=SK199 SK42=SK42 SK43=SK43 SK45=SK45 SK46=SK46 SK49=SK49 SK-I1=SK-I1 SK-I2=SK-I2 SK-I3=SK-I3 SYL133=SYL133 YL05=YL05 YL06=YL06 YL07=YL07 YL08=YL08 YL09=YL09 YL103=YL103 YL104=YL104 YL131=YL131 YL138=YL138 YL142=YL142 YL145=YL145 YL154=YL154 YL15=YL15 YL16=YL16 YL17=YL17 YL18=YL18 YL192=YL192 YL198=YL198 YL19=YL19 YL204=YL204 YL206=YL206 YL207=YL207 YL208=YL208 YL20=YL20 YL21=YL21 YL237=YL237 YL253=YL253 YL254=YL254 YL262=YL262 YL57=YL57 YL58=YL58 YL59=YL59 YL60=YL60 YL61=YL61 YL67=YL67 YL68=YL68 YL69=YL69 YL75=YL75 YL77=YL77 YL82=YL82 YL93=YL93 YL95=YL95 YL96=YL96 YL97=YL97 YL98=YL98
dimensions dimensionX=assayType dimensionY=sampleType
dividers assayType
sortOrder assayType=+ sampleType=+ donorID=+
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 5
visibility hide
type bed 3
track EdaccRelease2UCSDHistoneModificationViewCOV
shortLabel Coverage
view COV
maxHeightPixels 64:32:16
subTrack EdaccRelease2UCSDHistone
track H1_H2BK15ac_04
bigDataUrl H1_H2BK15ac_04.bigWig
shortLabel H1 H2BK15ac 04
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1444 Pcnt=40 Library:SAK204)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK15ac donorID=SAK204
type bigWig 0 30
noInherit on
color 200,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1444 Hotspot_Percentile=40 GSM=GSM605299 dateUnrestricted=2011-07-07
track H1_H3K4me3_67
bigDataUrl H1_H3K4me3_67.bigWig
shortLabel H1 H3K4me3 67
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6969 Pcnt=93 Library:SAK67)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=SAK67
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog="Millipore 04-745" chip_antibody_lot="DAM 1554357" Hotspot_Score=0.6969 Hotspot_Percentile=93 GSM=GSM605315 dateUnrestricted=2011-07-07
track IMR90_H3K9ac_233
bigDataUrl IMR90_H3K9ac_233.bigWig
shortLabel IMR90 H3K9ac 33
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5371 Pcnt=91 Library:LL233)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K9ac donorID=LL233
type bigWig 0 30
noInherit on
color 84,168,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.5371 Hotspot_Percentile=91 GSM=GSM469973 dateUnrestricted=2010-12-22
track H9_H3K9ac_SK199
bigDataUrl H9_H3K9ac_SK199.bigWig
shortLabel H9 H3K9ac 99
longLabel H9 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.229 Pcnt=46 Library:SK199)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H9 assayType=H3K9ac donorID=SK199
type bigWig 0 30
noInherit on
color 84,168,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.229 Hotspot_Percentile=46 GSM=GSM605324 dateUnrestricted=2011-07-07
track IMR90_H2AK5ac_L20
bigDataUrl IMR90_H2AK5ac_L20.bigWig
shortLabel IMR90 H2AK5ac 20
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4734 Pcnt=NA Library:YL20)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2AK5ac donorID=YL20
type bigWig 0 30
noInherit on
color 194,97,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.4734 Hotspot_Percentile=NA GSM=GSM521866 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_133
bigDataUrl IMR90_H3K4me1_133.bigWig
shortLabel IMR90 H3K4me1 33
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6392 Pcnt=100 Library:SYL133)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me1 donorID=SYL133
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.6392 Hotspot_Percentile=100 GSM=GSM521898 dateUnrestricted=2010-12-22
track H1_H3K9me3_77
bigDataUrl H1_H3K9me3_77.bigWig
shortLabel H1 H3K9me3 77
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2029 Pcnt=68 Library:YL77)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=YL77
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2029 Hotspot_Percentile=68 GSM=GSM605328 dateUnrestricted=2011-07-07
track IMR90_H3K4me3_221
bigDataUrl IMR90_H3K4me3_221.bigWig
shortLabel IMR90 H3K4me3 21
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.8482 Pcnt=100 Library:LL221)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me3 donorID=LL221
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.8482 Hotspot_Percentile=100 GSM=GSM469970 dateUnrestricted=2010-10-07
track IMR90_H2BK20ac_L07
bigDataUrl IMR90_H2BK20ac_L07.bigWig
shortLabel IMR90 H2BK20ac 07
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3776 Pcnt=75 Library:YL07)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK20ac donorID=YL07
type bigWig 0 30
noInherit on
color 0,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.3776 Hotspot_Percentile=75 GSM=GSM521879 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L19
bigDataUrl IMR90_H2BK15ac_L19.bigWig
shortLabel IMR90 H2BK15ac 19
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4578 Pcnt=100 Library:YL19)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK15ac donorID=YL19
type bigWig 0 30
noInherit on
color 200,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4578 Hotspot_Percentile=100 GSM=GSM521875 dateUnrestricted=2010-12-22
track H1_H2BK20ac_07
bigDataUrl H1_H2BK20ac_07.bigWig
shortLabel H1 H2BK20ac 07
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.121 Pcnt=25 Library:YL207)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK20ac donorID=YL207
type bigWig 0 30
noInherit on
color 0,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.121 Hotspot_Percentile=25 GSM=GSM605300 dateUnrestricted=2011-07-07
track IMR90_H3K4ac_K16
bigDataUrl IMR90_H3K4ac_K16.bigWig
shortLabel IMR90 H3K4ac 16
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4939 Pcnt=67 Library:SK16)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4ac donorID=SK16
type bigWig 0 30
noInherit on
color 255,255,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.4939 Hotspot_Percentile=67 GSM=GSM521894 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_235
bigDataUrl IMR90_H3K27ac_235.bigWig
shortLabel IMR90 H3K27ac 35
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7232 Pcnt=100 Library:LL235)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K27ac donorID=LL235
type bigWig 0 30
noInherit on
color 0,0,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.7232 Hotspot_Percentile=100 GSM=GSM469967 dateUnrestricted=2010-12-22
track H1_H3K4me2_22
bigDataUrl H1_H3K4me2_22.bigWig
shortLabel H1 H3K4me2 22
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6394 Pcnt=75 Library:LL322)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me2 donorID=LL322
type bigWig 0 30
noInherit on
color 0,82,41
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6394 Hotspot_Percentile=75 GSM=GSM602260 dateUnrestricted=2011-07-07
track IMR90_H4K91ac_K49
bigDataUrl IMR90_H4K91ac_K49.bigWig
shortLabel IMR90 H4K91ac 49
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5743 Pcnt=100 Library:SK49)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K91ac donorID=SK49
type bigWig 0 30
noInherit on
color 0,150,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.5743 Hotspot_Percentile=100 GSM=GSM521925 dateUnrestricted=2010-12-22
track H9_H3K4me2_SK198
bigDataUrl H9_H3K4me2_SK198.bigWig
shortLabel H9 H3K4me2 98
longLabel H9 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3454 Pcnt=13 Library:SK198)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H9 assayType=H3K4me2 donorID=SK198
type bigWig 0 30
noInherit on
color 0,82,41
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=727055 Hotspot_Score=0.3454 Hotspot_Percentile=13 GSM=GSM605314 dateUnrestricted=2011-07-07
track H1_H2AK5ac_01
bigDataUrl H1_H2AK5ac_01.bigWig
shortLabel H1 H2AK5ac 01
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1178 Pcnt=17 Library:SAK201)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2AK5ac donorID=SAK201
type bigWig 0 30
noInherit on
color 194,97,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.1178 Hotspot_Percentile=17 GSM=GSM602258 dateUnrestricted=2011-07-07
track IMR90_Input_5I1
bigDataUrl IMR90_Input_5I1.bigWig
shortLabel IMR90 Input 05I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2108 Pcnt=89 Library:IMR90-05-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=IMR90-05-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2108 Hotspot_Percentile=89 GSM=GSM521930 dateUnrestricted=2010-12-22
track IMR90_H3K18ac_230
bigDataUrl IMR90_H3K18ac_230.bigWig
shortLabel IMR90 H3K18ac 30
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6076 Pcnt=100 Library:LL230)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K18ac donorID=LL230
type bigWig 0 30
noInherit on
color 150,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.6076 Hotspot_Percentile=100 GSM=GSM469965 dateUnrestricted=2010-12-22
track IMR90_Input_LI1
bigDataUrl IMR90_Input_LI1.bigWig
shortLabel IMR90 Input LLI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.244 Pcnt=100 Library:LL-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=LL-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.244 Hotspot_Percentile=100 GSM=GSM521926 dateUnrestricted=2010-12-22
track H1_H4K91ac_54
bigDataUrl H1_H4K91ac_54.bigWig
shortLabel H1 H4K91ac 54
longLabel H1 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1945 Pcnt=33 Library:YL254)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H4K91ac donorID=YL254
type bigWig 0 30
noInherit on
color 0,150,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1945 Hotspot_Percentile=33 GSM=GSM605332 dateUnrestricted=2011-07-07
track IMR90_Input_6I1
bigDataUrl IMR90_Input_6I1.bigWig
shortLabel IMR90 Input 06I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2126 Pcnt=91 Library:IMR90-06-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=IMR90-06-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2126 Hotspot_Percentile=91 GSM=GSM521931 dateUnrestricted=2010-12-22
track H1_H3K9ac_68
bigDataUrl H1_H3K9ac_68.bigWig
shortLabel H1 H3K9ac 68
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.241 Pcnt=49 Library:SAK68)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9ac donorID=SAK68
type bigWig 0 30
noInherit on
color 84,168,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.241 Hotspot_Percentile=49 GSM=GSM605323 dateUnrestricted=2011-07-07
track H1_H3K4me1_28
bigDataUrl H1_H3K4me1_28.bigWig
shortLabel H1 H3K4me1 28
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1997 Pcnt=12 Library:LL228)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=LL228
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.1997 Hotspot_Percentile=12 GSM=GSM409307 dateUnrestricted=2010-05-03
track IMR90_H3K4me3_K03
bigDataUrl IMR90_H3K4me3_K03.bigWig
shortLabel IMR90 H3K4me3 03
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7673 Pcnt=98 Library:SK03)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me3 donorID=SK03
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39159 chip_antibody_lot=15808002 Hotspot_Score=0.7673 Hotspot_Percentile=98 GSM=GSM521901 dateUnrestricted=2010-12-22
track H1_H2BK5ac_02
bigDataUrl H1_H2BK5ac_02.bigWig
shortLabel H1 H2BK5ac 02
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1906 Pcnt=50 Library:SAK202)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK5ac donorID=SAK202
type bigWig 0 30
noInherit on
color 0,184,50
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39123 chip_antibody_lot=229 Hotspot_Score=0.1906 Hotspot_Percentile=50 GSM=GSM605303 dateUnrestricted=2011-07-07
track H1_H3K56ac_11
bigDataUrl H1_H3K56ac_11.bigWig
shortLabel H1 H3K56ac 11
longLabel H1 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.231 Pcnt=33 Library:SAK211)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K56ac donorID=SAK211
type bigWig 0 30
noInherit on
color 0,255,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-677" chip_antibody_lot=DAM1462569 Hotspot_Score=0.231 Hotspot_Percentile=33 GSM=GSM605317 dateUnrestricted=2011-07-07
track H1_H4K20me1_53
bigDataUrl H1_H4K20me1_53.bigWig
shortLabel H1 H4K20me1 53
longLabel H1 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1863 Pcnt=33 Library:YL253)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H4K20me1 donorID=YL253
type bigWig 0 30
noInherit on
color 0,200,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.1863 Hotspot_Percentile=33 GSM=GSM605329 dateUnrestricted=2011-07-07
track IMR90_H3K79me2_K43
bigDataUrl IMR90_H3K79me2_K43.bigWig
shortLabel IMR90 H3K79me2 43
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4768 Pcnt=100 Library:SK43)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me2 donorID=SK43
type bigWig 0 30
noInherit on
color 200,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4768 Hotspot_Percentile=100 GSM=GSM521911 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_L58
bigDataUrl IMR90_H3K27ac_L58.bigWig
shortLabel IMR90 H3K27ac 58
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7 Pcnt=83 Library:YL58)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K27ac donorID=YL58
type bigWig 0 30
noInherit on
color 0,0,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=34624 Hotspot_Score=0.7 Hotspot_Percentile=83 GSM=GSM521887 dateUnrestricted=2010-12-22
track IMR90_H3K9me3_K06
bigDataUrl IMR90_H3K9me3_K06.bigWig
shortLabel IMR90 H3K9me3 06
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1913 Pcnt=64 Library:SK06)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K9me3 donorID=SK06
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=Ab8896 chip_antibody_lot=484099 Hotspot_Score=0.1913 Hotspot_Percentile=64 GSM=GSM521913 dateUnrestricted=2010-12-22
track IMR90_H3K4ac_239
bigDataUrl IMR90_H3K4ac_239.bigWig
shortLabel IMR90 H3K4ac 39
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5219 Pcnt=100 Library:LL239)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4ac donorID=LL239
type bigWig 0 30
noInherit on
color 255,255,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.5219 Hotspot_Percentile=100 GSM=GSM521893 dateUnrestricted=2010-12-22
track H1_H4K5ac_23
bigDataUrl H1_H4K5ac_23.bigWig
shortLabel H1 H4K5ac 23
longLabel H1 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3499 Pcnt=NA Library:LL323)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H4K5ac donorID=LL323
type bigWig 0 30
noInherit on
color 200,0,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.3499 Hotspot_Percentile=NA GSM=GSM605330 dateUnrestricted=2011-07-07
track IMR90_H4K20me1_L21
bigDataUrl IMR90_H4K20me1_L21.bigWig
shortLabel IMR90 H4K20me1 21
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2312 Pcnt=67 Library:YL21)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K20me1 donorID=YL21
type bigWig 0 30
noInherit on
color 0,200,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.2312 Hotspot_Percentile=67 GSM=GSM521915 dateUnrestricted=2010-12-22
track H1_H2BK12ac_03
bigDataUrl H1_H2BK12ac_03.bigWig
shortLabel H1 H2BK12ac 03
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.202 Pcnt=50 Library:SAK203)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK12ac donorID=SAK203
type bigWig 0 30
noInherit on
color 0,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.202 Hotspot_Percentile=50 GSM=GSM605297 dateUnrestricted=2011-07-07
track IMR90_H3K27me3_223
bigDataUrl IMR90_H3K27me3_223.bigWig
shortLabel IMR90 H3K27me3 23
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.386 Pcnt=96 Library:LL223)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K27me3 donorID=LL223
type bigWig 0 30
noInherit on
color 204,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.386 Hotspot_Percentile=96 GSM=GSM469968 dateUnrestricted=2010-10-07
track H1_H3K36me3_20
bigDataUrl H1_H3K36me3_20.bigWig
shortLabel H1 H3K36me3 20
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3294 Pcnt=75 Library:LL220)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=LL220
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.3294 Hotspot_Percentile=75 GSM=GSM409312 dateUnrestricted=2010-05-03
track H9_H3K4me3_SK101
bigDataUrl H9_H3K4me3_SK101.bigWig
shortLabel H9 H3K4me3 01
longLabel H9 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6546 Pcnt=89 Library:SK101)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H9 assayType=H3K4me3 donorID=SK101
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.6546 Hotspot_Percentile=89 GSM=GSM605316 dateUnrestricted=2011-07-07
track H1_Input_54
bigDataUrl H1_Input_54.bigWig
shortLabel H1 Input 54
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1195 Pcnt=79 Library:YL154)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=YL154
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1195 Hotspot_Percentile=79 GSM=GSM605337 dateUnrestricted=2011-07-07
track H1_H3K18ac_08
bigDataUrl H1_H3K18ac_08.bigWig
shortLabel H1 H3K18ac 08
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1969 Pcnt=25 Library:SAK208)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K18ac donorID=SAK208
type bigWig 0 30
noInherit on
color 150,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=527530 Hotspot_Score=0.1969 Hotspot_Percentile=25 GSM=GSM602259 dateUnrestricted=2011-07-07
track IMR90_H3K56ac_L05
bigDataUrl IMR90_H3K56ac_L05.bigWig
shortLabel IMR90 H3K56ac 05
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3288 Pcnt=100 Library:YL05)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K56ac donorID=YL05
type bigWig 0 30
noInherit on
color 0,255,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3288 Hotspot_Percentile=100 GSM=GSM521902 dateUnrestricted=2010-12-22
track H1_H3K27me3_14
bigDataUrl H1_H3K27me3_14.bigWig
shortLabel H1 H3K27me3 14
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.497 Pcnt=100 Library:LL314)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=LL314
type bigWig 0 30
noInherit on
color 204,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.497 Hotspot_Percentile=100 GSM=GSM466734 dateUnrestricted=2010-10-07
track H1_Input_62
bigDataUrl H1_Input_62.bigWig
shortLabel H1 Input 62
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.0803 Pcnt=59 Library:YL262)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=YL262
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0803 Hotspot_Percentile=59 GSM=GSM605336 dateUnrestricted=2011-07-07
track H1_H3K23me2_10
bigDataUrl H1_H3K23me2_10.bigWig
shortLabel H1 H3K23me2 10
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3013 Pcnt=100 Library:SAK210)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K23me2 donorID=SAK210
type bigWig 0 30
noInherit on
color 0,110,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.3013 Hotspot_Percentile=100 GSM=GSM605306 dateUnrestricted=2011-07-07
track IMR90_H4K20me1_L59
bigDataUrl IMR90_H4K20me1_L59.bigWig
shortLabel IMR90 H4K20me1 59
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.346 Pcnt=100 Library:YL59)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K20me1 donorID=YL59
type bigWig 0 30
noInherit on
color 0,200,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.346 Hotspot_Percentile=100 GSM=GSM521917 dateUnrestricted=2010-12-22
track IMR90_H3K23ac_L09
bigDataUrl IMR90_H3K23ac_L09.bigWig
shortLabel IMR90 H3K23ac 09
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2996 Pcnt=50 Library:YL09)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K23ac donorID=YL09
type bigWig 0 30
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.2996 Hotspot_Percentile=50 GSM=GSM521885 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_K11
bigDataUrl IMR90_H3K79me1_K11.bigWig
shortLabel IMR90 H3K79me1 11
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2999 Pcnt=57 Library:SK11)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me1 donorID=SK11
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=Ab2886 chip_antibody_lot=502497 Hotspot_Score=0.2999 Hotspot_Percentile=57 GSM=GSM521906 dateUnrestricted=2010-12-22
track H1_H3K4me2_96
bigDataUrl H1_H3K4me2_96.bigWig
shortLabel H1 H3K4me2 96
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5517 Pcnt=50 Library:YL96)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me2 donorID=YL96
type bigWig 0 30
noInherit on
color 0,82,41
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.5517 Hotspot_Percentile=50 GSM=GSM602261 dateUnrestricted=2011-07-07
track IMR90_H4K8ac_K45
bigDataUrl IMR90_H4K8ac_K45.bigWig
shortLabel IMR90 H4K8ac 45
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5364 Pcnt=100 Library:SK45)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K8ac donorID=SK45
type bigWig 0 30
noInherit on
color 150,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5364 Hotspot_Percentile=100 GSM=GSM521922 dateUnrestricted=2010-12-22
track H1_Input_1U
bigDataUrl H1_Input_1U.bigWig
shortLabel H1 Input 1U
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.187 Pcnt=88 Library:LLH1U)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=LLH1U
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.187 Hotspot_Percentile=88 GSM=GSM605339 dateUnrestricted=2011-07-07
track IMR90_H3K14ac_K17
bigDataUrl IMR90_H3K14ac_K17.bigWig
shortLabel IMR90 H3K14ac 17
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3307 Pcnt=50 Library:SK17)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K14ac donorID=SK17
type bigWig 0 30
noInherit on
color 0,0,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.3307 Hotspot_Percentile=50 GSM=GSM521883 dateUnrestricted=2010-12-22
track IMR90_H2BK20ac_K14
bigDataUrl IMR90_H2BK20ac_K14.bigWig
shortLabel IMR90 H2BK20ac 14
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4474 Pcnt=100 Library:SK14)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK20ac donorID=SK14
type bigWig 0 30
noInherit on
color 0,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.4474 Hotspot_Percentile=100 GSM=GSM521880 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_138
bigDataUrl IMR90_H2BK12ac_138.bigWig
shortLabel IMR90 H2BK12ac 38
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5271 Pcnt=100 Library:YL138)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK12ac donorID=YL138
type bigWig 0 30
noInherit on
color 0,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.5271 Hotspot_Percentile=100 GSM=GSM521874 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_L68
bigDataUrl IMR90_H2BK12ac_L68.bigWig
shortLabel IMR90 H2BK12ac 68
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.523 Pcnt=100 Library:YL68)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK12ac donorID=YL68
type bigWig 0 30
noInherit on
color 0,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.523 Hotspot_Percentile=100 GSM=GSM521873 dateUnrestricted=2010-12-22
track H1_H3K4me1_11
bigDataUrl H1_H3K4me1_11.bigWig
shortLabel H1 H3K4me1 11
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.34 Pcnt=33 Library:LL311)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=LL311
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Upstate chip_antibody_catalog=07-436 chip_antibody_lot=DAM1400139 Hotspot_Score=0.34 Hotspot_Percentile=33 GSM=GSM466739 dateUnrestricted=2010-10-07
track H1_H3K9me3_18
bigDataUrl H1_H3K9me3_18.bigWig
shortLabel H1 H3K9me3 18
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4557 Pcnt=NA Library:LL218)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=LL218
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.4557 Hotspot_Percentile=NA GSM=GSM605325 dateUnrestricted=2011-07-07
track IMR90_H3K9me3_224
bigDataUrl IMR90_H3K9me3_224.bigWig
shortLabel IMR90 H3K9me3 24
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2682 Pcnt=85 Library:LL224)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K9me3 donorID=LL224
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2682 Hotspot_Percentile=85 GSM=GSM469974 dateUnrestricted=2010-10-07
track IMR90_H3K36me3_225
bigDataUrl IMR90_H3K36me3_225.bigWig
shortLabel IMR90 H3K36me3 25
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4615 Pcnt=98 Library:LL225)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K36me3 donorID=LL225
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4615 Hotspot_Percentile=98 GSM=GSM521890 dateUnrestricted=2010-12-22
track IMR90_H3K4me2_232
bigDataUrl IMR90_H3K4me2_232.bigWig
shortLabel IMR90 H3K4me2 32
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6838 Pcnt=100 Library:LL232)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me2 donorID=LL232
type bigWig 0 30
noInherit on
color 0,82,41
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6838 Hotspot_Percentile=100 GSM=GSM521899 dateUnrestricted=2010-12-22
track IMR90_H3K9ac_K46
bigDataUrl IMR90_H3K9ac_K46.bigWig
shortLabel IMR90 H3K9ac 46
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6246 Pcnt=97 Library:SK46)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K9ac donorID=SK46
type bigWig 0 30
noInherit on
color 84,168,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.6246 Hotspot_Percentile=97 GSM=GSM521912 dateUnrestricted=2010-12-22
track H1_H2BK120ac_06
bigDataUrl H1_H2BK120ac_06.bigWig
shortLabel H1 H2BK120ac 06
longLabel H1 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.148 Pcnt=33 Library:SAK206)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK120ac donorID=SAK206
type bigWig 0 30
noInherit on
color 0,168,84
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39119 chip_antibody_lot=255 Hotspot_Score=0.148 Hotspot_Percentile=33 GSM=GSM605295 dateUnrestricted=2011-07-07
track IMR90_H3K79me1_L16
bigDataUrl IMR90_H3K79me1_L16.bigWig
shortLabel IMR90 H3K79me1 16
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3182 Pcnt=71 Library:YL16)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me1 donorID=YL16
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886-100 chip_antibody_lot=502497 Hotspot_Score=0.3182 Hotspot_Percentile=71 GSM=GSM521904 dateUnrestricted=2010-12-22
track IMR90_Input_LI2
bigDataUrl IMR90_Input_LI2.bigWig
shortLabel IMR90 Input LLI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2434 Pcnt=98 Library:LL-I2)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=LL-I2
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2434 Hotspot_Percentile=98 GSM=GSM521927 dateUnrestricted=2010-12-22
track IMR90_H3K4me2_K07
bigDataUrl IMR90_H3K4me2_K07.bigWig
shortLabel IMR90 H3K4me2 07
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6402 Pcnt=88 Library:SK07)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me2 donorID=SK07
type bigWig 0 30
noInherit on
color 0,82,41
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6402 Hotspot_Percentile=88 GSM=GSM521900 dateUnrestricted=2010-12-22
track H1_H3K9ac_40
bigDataUrl H1_H3K9ac_40.bigWig
shortLabel H1 H3K9ac 40
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2413 Pcnt=51 Library:LL240)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9ac donorID=LL240
type bigWig 0 30
noInherit on
color 84,168,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.2413 Hotspot_Percentile=51 GSM=GSM434785 dateUnrestricted=2010-05-03
track IMR90_H4K8ac_L17
bigDataUrl IMR90_H4K8ac_L17.bigWig
shortLabel IMR90 H4K8ac 17
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5345 Pcnt=75 Library:YL17)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K8ac donorID=YL17
type bigWig 0 30
noInherit on
color 150,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5345 Hotspot_Percentile=75 GSM=GSM521919 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_K42
bigDataUrl IMR90_H2BK15ac_K42.bigWig
shortLabel IMR90 H2BK15ac 42
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4116 Pcnt=80 Library:SK42)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK15ac donorID=SK42
type bigWig 0 30
noInherit on
color 200,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4116 Hotspot_Percentile=80 GSM=GSM521878 dateUnrestricted=2010-12-22
track H1_H3K79me2_80
bigDataUrl H1_H3K79me2_80.bigWig
shortLabel H1 H3K79me2 80
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=25 Library:SAK80)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K79me2 donorID=SAK80
type bigWig 0 30
noInherit on
color 200,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1512 Hotspot_Percentile=25 GSM=GSM605321 dateUnrestricted=2011-07-07
track H1_H3K27me3_95
bigDataUrl H1_H3K27me3_95.bigWig
shortLabel H1 H3K27me3 95
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=85 Library:YL95)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=YL95
type bigWig 0 30
noInherit on
color 204,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3196 Hotspot_Percentile=85 GSM=GSM605308 dateUnrestricted=2011-07-07
track H1_H2BK5ac_98
bigDataUrl H1_H2BK5ac_98.bigWig
shortLabel H1 H2BK5ac 98
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2022 Pcnt=100 Library:YL98)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK5ac donorID=YL98
type bigWig 0 30
noInherit on
color 0,184,50
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40886 chip_antibody_lot=529107 Hotspot_Score=0.2022 Hotspot_Percentile=100 GSM=GSM605302 dateUnrestricted=2011-07-07
track H9_H3K27ac_YL237
bigDataUrl H9_H3K27ac_YL237.bigWig
shortLabel H9 H3K27ac 37
longLabel H9 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1947 Pcnt=33 Library:YL237)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H9 assayType=H3K27ac donorID=YL237
type bigWig 0 30
noInherit on
color 0,0,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="300 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39133 chip_antibody_lot=19208002 Hotspot_Score=0.1947 Hotspot_Percentile=33 GSM=GSM605307 dateUnrestricted=2011-07-07
track IMR90_H2BK120ac_L06
bigDataUrl IMR90_H2BK120ac_L06.bigWig
shortLabel IMR90 H2BK120ac 06
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.492 Pcnt=67 Library:YL06)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK120ac donorID=YL06
type bigWig 0 30
noInherit on
color 0,168,84
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.492 Hotspot_Percentile=67 GSM=GSM521869 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L69
bigDataUrl IMR90_H2BK15ac_L69.bigWig
shortLabel IMR90 H2BK15ac 69
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2964 Pcnt=60 Library:YL69)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK15ac donorID=YL69
type bigWig 0 30
noInherit on
color 200,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.2964 Hotspot_Percentile=60 GSM=GSM521877 dateUnrestricted=2010-12-22
track H1_H2BK12ac_93
bigDataUrl H1_H2BK12ac_93.bigWig
shortLabel H1 H2BK12ac 93
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1846 Pcnt=25 Library:YL93)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK12ac donorID=YL93
type bigWig 0 30
noInherit on
color 0,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.1846 Hotspot_Percentile=25 GSM=GSM605296 dateUnrestricted=2011-07-07
track IMR90_H3K27me3_K05
bigDataUrl IMR90_H3K27me3_K05.bigWig
shortLabel IMR90 H3K27me3 05
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2404 Pcnt=54 Library:SK05)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K27me3 donorID=SK05
type bigWig 0 30
noInherit on
color 204,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2404 Hotspot_Percentile=54 GSM=GSM521889 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_K04
bigDataUrl IMR90_H3K4me1_K04.bigWig
shortLabel IMR90 H3K4me1 04
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5718 Pcnt=93 Library:SK04)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me1 donorID=SK04
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5718 Hotspot_Percentile=93 GSM=GSM521897 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_222
bigDataUrl IMR90_H3K4me1_222.bigWig
shortLabel IMR90 H3K4me1 22
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5529 Pcnt=88 Library:LL222)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K4me1 donorID=LL222
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5529 Hotspot_Percentile=88 GSM=GSM521895 dateUnrestricted=2010-12-22
track IMR90_H3K23ac_K18
bigDataUrl IMR90_H3K23ac_K18.bigWig
shortLabel IMR90 H3K23ac 18
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3105 Pcnt=100 Library:SK18)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K23ac donorID=SK18
type bigWig 0 30
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.3105 Hotspot_Percentile=100 GSM=GSM521886 dateUnrestricted=2010-12-22
track H1_H3K9me3_75
bigDataUrl H1_H3K9me3_75.bigWig
shortLabel H1 H3K9me3 75
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1788 Pcnt=56 Library:YL75)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=YL75
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.1788 Hotspot_Percentile=56 GSM=GSM605327 dateUnrestricted=2011-07-07
track H1_Input_I1
bigDataUrl H1_Input_I1.bigWig
shortLabel H1 Input I1
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1133 Pcnt=77 Library:LL-H1-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=LL-H1-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1133 Hotspot_Percentile=77 GSM=GSM605333 dateUnrestricted=2011-07-07
track H1_H3K4ac_07
bigDataUrl H1_H3K4ac_07.bigWig
shortLabel H1 H3K4ac 07
longLabel H1 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1755 Pcnt=33 Library:SAK207)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4ac donorID=SAK207
type bigWig 0 30
noInherit on
color 255,255,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-539" chip_antibody_lot=26747 Hotspot_Score=0.1755 Hotspot_Percentile=33 GSM=GSM605311 dateUnrestricted=2011-07-07
track IMR90_H2AK5ac_L60
bigDataUrl IMR90_H2AK5ac_L60.bigWig
shortLabel IMR90 H2AK5ac 60
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4598 Pcnt=50 Library:YL60)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2AK5ac donorID=YL60
type bigWig 0 30
noInherit on
color 194,97,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab5152 chip_antibody_lot=496800 Hotspot_Score=0.4598 Hotspot_Percentile=50 GSM=GSM521868 dateUnrestricted=2010-12-22
track IMR90_H4K91ac_L08
bigDataUrl IMR90_H4K91ac_L08.bigWig
shortLabel IMR90 H4K91ac 08
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4622 Pcnt=67 Library:YL08)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K91ac donorID=YL08
type bigWig 0 30
noInherit on
color 0,150,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.4622 Hotspot_Percentile=67 GSM=GSM521924 dateUnrestricted=2010-12-22
track H1_H3K4me3_12
bigDataUrl H1_H3K4me3_12.bigWig
shortLabel H1 H3K4me3 12
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6914 Pcnt=92 Library:LL312)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=LL312
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.6914 Hotspot_Percentile=92 GSM=GSM469971 dateUnrestricted=2010-10-07
track H1_H3K79me2_04
bigDataUrl H1_H3K79me2_04.bigWig
shortLabel H1 H3K79me2 04
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1514 Pcnt=50 Library:YL204)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K79me2 donorID=YL204
type bigWig 0 30
noInherit on
color 200,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1514 Hotspot_Percentile=50 GSM=GSM605322 dateUnrestricted=2011-07-07
track IMR90_H3K79me2_238
bigDataUrl IMR90_H3K79me2_238.bigWig
shortLabel IMR90 H3K79me2 38
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4094 Pcnt=75 Library:LL238)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me2 donorID=LL238
type bigWig 0 30
noInherit on
color 200,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4094 Hotspot_Percentile=75 GSM=GSM521909 dateUnrestricted=2010-12-22
track H1_H2BK15ac_06
bigDataUrl H1_H2BK15ac_06.bigWig
shortLabel H1 H2BK15ac 06
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1067 Pcnt=20 Library:YL206)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK15ac donorID=YL206
type bigWig 0 30
noInherit on
color 200,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1067 Hotspot_Percentile=20 GSM=GSM605298 dateUnrestricted=2011-07-07
track IMR90_H4K5ac_234
bigDataUrl IMR90_H4K5ac_234.bigWig
shortLabel IMR90 H4K5ac 34
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5581 Pcnt=100 Library:LL234)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K5ac donorID=LL234
type bigWig 0 30
noInherit on
color 200,0,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5581 Hotspot_Percentile=100 GSM=GSM469975 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_L57
bigDataUrl IMR90_H4K8ac_L57.bigWig
shortLabel IMR90 H4K8ac 57
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4645 Pcnt=25 Library:YL57)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K8ac donorID=YL57
type bigWig 0 30
noInherit on
color 150,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.4645 Hotspot_Percentile=25 GSM=GSM521921 dateUnrestricted=2010-12-22
track IMR90_Input_KI3
bigDataUrl IMR90_Input_KI3.bigWig
shortLabel IMR90 Input SKI3
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1603 Pcnt=86 Library:SK-I3)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=SK-I3
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1603 Hotspot_Percentile=86 GSM=GSM521933 dateUnrestricted=2010-12-22
track H1_H3K18ac_21
bigDataUrl H1_H3K18ac_21.bigWig
shortLabel H1 H3K18ac 21
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=50 Library:LL321)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K18ac donorID=LL321
type bigWig 0 30
noInherit on
color 150,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=122116 Hotspot_Score=0.3196 Hotspot_Percentile=50 GSM=GSM605304 dateUnrestricted=2011-07-07
track H1_H3K4me1_31
bigDataUrl H1_H3K4me1_31.bigWig
shortLabel H1 H3K4me1 31
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3905 Pcnt=58 Library:YL131)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=YL131
type bigWig 0 30
noInherit on
color 0,133,66
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=27 medium=mTeSER Sex=Male batch=H1Jp27(16) experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.3905 Hotspot_Percentile=58 GSM=GSM605312 dateUnrestricted=2011-07-07
track IMR90_H4K8ac_142
bigDataUrl IMR90_H4K8ac_142.bigWig
shortLabel IMR90 H4K8ac 42
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4842 Pcnt=50 Library:YL142)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K8ac donorID=YL142
type bigWig 0 30
noInherit on
color 150,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.4842 Hotspot_Percentile=50 GSM=GSM521923 dateUnrestricted=2010-12-22
track IMR90_H4K5ac_K08
bigDataUrl IMR90_H4K5ac_K08.bigWig
shortLabel IMR90 H4K5ac 08
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5026 Pcnt=75 Library:SK08)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H4K5ac donorID=SK08
type bigWig 0 30
noInherit on
color 200,0,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5026 Hotspot_Percentile=75 GSM=GSM521918 dateUnrestricted=2010-12-22
track IMR90_H3K14ac_L15
bigDataUrl IMR90_H3K14ac_L15.bigWig
shortLabel IMR90 H3K14ac 15
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.367 Pcnt=100 Library:YL15)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K14ac donorID=YL15
type bigWig 0 30
noInherit on
color 0,0,200
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.367 Hotspot_Percentile=100 GSM=GSM521881 dateUnrestricted=2010-12-22
track H1_H3K79me1_82
bigDataUrl H1_H3K79me1_82.bigWig
shortLabel H1 H3K79me1 82
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1822 Pcnt=43 Library:YL82)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K79me1 donorID=YL82
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1822 Hotspot_Percentile=43 GSM=GSM605318 dateUnrestricted=2011-07-07
track H1_H3K36me3_70
bigDataUrl H1_H3K36me3_70.bigWig
shortLabel H1 H3K36me3 70
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2825 Pcnt=58 Library:SAK70)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=SAK70
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707948 Hotspot_Score=0.2825 Hotspot_Percentile=58 GSM=GSM605309 dateUnrestricted=2011-07-07
track IMR90_H3K79me1_103
bigDataUrl IMR90_H3K79me1_103.bigWig
shortLabel IMR90 H3K79me1 03
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3893 Pcnt=100 Library:YL103)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me1 donorID=YL103
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=527479 Hotspot_Score=0.3893 Hotspot_Percentile=100 GSM=GSM521907 dateUnrestricted=2010-12-22
track IMR90_H3K9me3_104
bigDataUrl IMR90_H3K9me3_104.bigWig
shortLabel IMR90 H3K9me3 04
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3143 Pcnt=88 Library:YL104)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K9me3 donorID=YL104
type bigWig 0 30
noInherit on
color 179,0,92
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.3143 Hotspot_Percentile=88 GSM=GSM521914 dateUnrestricted=2010-12-22
track H1_H3K79me1_92
bigDataUrl H1_H3K79me1_92.bigWig
shortLabel H1 H3K79me1 92
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.123 Pcnt=14 Library:YL192)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K79me1 donorID=YL192
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.123 Hotspot_Percentile=14 GSM=GSM605320 dateUnrestricted=2011-07-07
track IMR90_Input_KI2
bigDataUrl IMR90_Input_KI2.bigWig
shortLabel IMR90 Input SKI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.226 Pcnt=95 Library:SK-I2)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=SK-I2
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.226 Hotspot_Percentile=95 GSM=GSM521929 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_145
bigDataUrl IMR90_H3K79me1_145.bigWig
shortLabel IMR90 H3K79me1 45
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3555 Pcnt=86 Library:YL145)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K79me1 donorID=YL145
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=679856 Hotspot_Score=0.3555 Hotspot_Percentile=86 GSM=GSM521908 dateUnrestricted=2010-12-22
track H1_H3K23me2_98
bigDataUrl H1_H3K23me2_98.bigWig
shortLabel H1 H3K23me2 98
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.091 Pcnt=50 Library:YL198)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K23me2 donorID=YL198
type bigWig 0 30
noInherit on
color 0,110,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=52 medium=mTeSER Sex=Male batch=H1Ep52 experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.091 Hotspot_Percentile=50 GSM=GSM605305 dateUnrestricted=2011-07-07
track IMR90_H3K36me3_L67
bigDataUrl IMR90_H3K36me3_L67.bigWig
shortLabel IMR90 H3K36me3 67
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4485 Pcnt=94 Library:YL67)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K36me3 donorID=YL67
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.4485 Hotspot_Percentile=94 GSM=GSM521892 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_231
bigDataUrl IMR90_H3K27ac_231.bigWig
shortLabel IMR90 H3K27ac 31
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6371 Pcnt=67 Library:LL231)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K27ac donorID=LL231
type bigWig 0 30
noInherit on
color 0,0,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.6371 Hotspot_Percentile=67 GSM=GSM469966 dateUnrestricted=2010-12-22
track IMR90_Input_7I1
bigDataUrl IMR90_Input_7I1.bigWig
shortLabel IMR90 Input 07I1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2408 Pcnt=97 Library:IMR90-07-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=IMR90-07-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2408 Hotspot_Percentile=97 GSM=GSM521932 dateUnrestricted=2010-12-22
track H1_H2BK20ac_05
bigDataUrl H1_H2BK20ac_05.bigWig
shortLabel H1 H2BK20ac 05
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=50 Library:SAK205)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2BK20ac donorID=SAK205
type bigWig 0 30
noInherit on
color 0,200,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.1512 Hotspot_Percentile=50 GSM=GSM605301 dateUnrestricted=2011-07-07
track H1_H3K4me3_27
bigDataUrl H1_H3K4me3_27.bigWig
shortLabel H1 H3K4me3 27
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6545 Pcnt=87 Library:LL227)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=LL227
type bigWig 0 30
noInherit on
color 0,117,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1494280 Hotspot_Score=0.6545 Hotspot_Percentile=87 GSM=GSM409308 dateUnrestricted=2010-05-03
track H1_H3K79me1_73
bigDataUrl H1_H3K79me1_73.bigWig
shortLabel H1 H3K79me1 73
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1751 Pcnt=29 Library:SAK73)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K79me1 donorID=SAK73
type bigWig 0 30
noInherit on
color 255,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1751 Hotspot_Percentile=29 GSM=GSM605319 dateUnrestricted=2011-07-07
track H1_H3K27me3_41
bigDataUrl H1_H3K27me3_41.bigWig
shortLabel H1 H3K27me3 41
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3607 Pcnt=88 Library:LL241)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=LL241
type bigWig 0 30
noInherit on
color 204,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3607 Hotspot_Percentile=88 GSM=GSM434776 dateUnrestricted=2010-05-03
track H9_H3K36me3_SK102
bigDataUrl H9_H3K36me3_SK102.bigWig
shortLabel H9 H3K36me3 02
longLabel H9 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3335 Pcnt=77 Library:SK102)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H9 assayType=H3K36me3 donorID=SK102
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.3335 Hotspot_Percentile=77 GSM=GSM605310 dateUnrestricted=2011-07-07
track H1_Input_I2
bigDataUrl H1_Input_I2.bigWig
shortLabel H1 Input I2
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1532 Pcnt=82 Library:LL-H1-I2)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=LL-H1-I2
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Male experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1532 Hotspot_Percentile=82 GSM=GSM605334 dateUnrestricted=2011-07-07
track IMR90_Input_KI1
bigDataUrl IMR90_Input_KI1.bigWig
shortLabel IMR90 Input SKI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2235 Pcnt=94 Library:SK-I1)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=Input donorID=SK-I1
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2235 Hotspot_Percentile=94 GSM=GSM521928 dateUnrestricted=2010-12-22
track IMR90_H2BK120ac_K15
bigDataUrl IMR90_H2BK120ac_K15.bigWig
shortLabel IMR90 H2BK120ac 15
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5479 Pcnt=100 Library:SK15)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK120ac donorID=SK15
type bigWig 0 30
noInherit on
color 0,168,84
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.5479 Hotspot_Percentile=100 GSM=GSM521870 dateUnrestricted=2010-12-22
track IMR90_H3K18ac_K09
bigDataUrl IMR90_H3K18ac_K09.bigWig
shortLabel IMR90 H3K18ac 09
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5626 Pcnt=75 Library:SK09)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K18ac donorID=SK09
type bigWig 0 30
noInherit on
color 150,0,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.5626 Hotspot_Percentile=75 GSM=GSM521884 dateUnrestricted=2010-12-22
track H1_H2AK5ac_97
bigDataUrl H1_H2AK5ac_97.bigWig
shortLabel H1 H2AK5ac 97
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2032 Pcnt=33 Library:YL97)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H2AK5ac donorID=YL97
type bigWig 0 30
noInherit on
color 194,97,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.2032 Hotspot_Percentile=33 GSM=GSM602257 dateUnrestricted=2011-07-07
track H1_H3K36me3_60
bigDataUrl H1_H3K36me3_60.bigWig
shortLabel H1 H3K36me3 60
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4284 Pcnt=91 Library:LL160)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=LL160
type bigWig 0 30
noInherit on
color 0,194,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4284 Hotspot_Percentile=91 GSM=GSM466737 dateUnrestricted=2010-10-07
track IMR90_H3K56ac_L61
bigDataUrl IMR90_H3K56ac_L61.bigWig
shortLabel IMR90 H3K56ac 61
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3096 Pcnt=67 Library:YL61)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H3K56ac donorID=YL61
type bigWig 0 30
noInherit on
color 0,255,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3096 Hotspot_Percentile=67 GSM=GSM521903 dateUnrestricted=2010-12-22
track H1_Input_08
bigDataUrl H1_Input_08.bigWig
shortLabel H1 Input 08
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.083 Pcnt=65 Library:YL208)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=YL208
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.083 Hotspot_Percentile=65 GSM=GSM605335 dateUnrestricted=2011-07-07
track H1_H3K27ac_13
bigDataUrl H1_H3K27ac_13.bigWig
shortLabel H1 H3K27ac 13
longLabel H1 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3968 Pcnt=50 Library:LL313)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27ac donorID=LL313
type bigWig 0 30
noInherit on
color 0,0,150
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.3968 Hotspot_Percentile=50 GSM=GSM466732 dateUnrestricted=2010-12-22
track H1_Input_19
bigDataUrl H1_Input_19.bigWig
shortLabel H1 Input 19
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1569 Pcnt=83 Library:DM219)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=DM219
type bigWig 0 30
noInherit on
color 0,0,133
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1569 Hotspot_Percentile=83 GSM=GSM605338 dateUnrestricted=2011-07-07
track IMR90_H2BK12ac_L18
bigDataUrl IMR90_H2BK12ac_L18.bigWig
shortLabel IMR90 H2BK12ac 18
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.502 Pcnt=75 Library:YL18)
subTrack EdaccRelease2UCSDHistoneModificationViewCOV
subGroups view=COV sampleType=IMR90 assayType=H2BK12ac donorID=YL18
type bigWig 0 30
noInherit on
color 0,0,255
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=451732 Hotspot_Score=0.502 Hotspot_Percentile=75 GSM=GSM521871 dateUnrestricted=2010-12-22
track EdaccRelease2BIHistone
compositeTrack on
shortLabel BI Histone
longLabel Histone Modification by Chip-seq Signal from REMC/Broad
group edacc2
subGroup1 view Views ALN=Alignments COV=Coverage
subGroup2 sampleType Sample_Type ADMSC=Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells AK=Adult_Kidney AL=Adult_Liver AN=Adipose_Nuclei BMDMSC=Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cu CD15=CD15_Primary_Cells CD19=CD19_Primary_Cells CD34=CD34_Primary_Cells CD34C=CD34_Cultured_Cells CD3=CD3_Primary_Cells CD4M=CD4_Memory_Primary_Cells CM=Colonic_Mucosa DM=Duodenum_Mucosa ESI3=ES-I3 ESWA7=ES-WA7 FB=Fetal_Brain FH=Fetal_Heart FK=Fetal_Kidney FL=Fetal_Lung H1=H1Es iPS11a=iPS11a iPS15b=iPS15b iPS18b=iPS18b iPS18c=iPS18c iPS20b=iPS20b MCD34=Mobilized_CD34_Primary MCD4=Mobilized_CD4_Primary_Cells MS=Muscle_Satellite_Cultured_Cells PI=Pancreatic_Islets RM=Rectal_Mucosa RSM=Rectal_Smooth_Muscle SM=Skeletal_Muscle SSM=Stomach_Smooth_Muscle Th17=Th17_Primary_Cells Treg=Treg_Primary_Cells
subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input
subGroup4 donorID Donor/Library 1=1 123=123 19=19 20=20 23.0=23.0 27=27 28=28 29=29 3.0=3.0 30=30 31=31 32=32 37=37 4=4 5.0=5.0 5=5 57=57 61=61 62=62 63=63 7=7 CD19_12/22/08=CD19_12/22/08 CD19_12/29/08=CD19_12/29/08 CD19_2/20/09=CD19_2/20/09 CD19_6/26/08=CD19_6/26/08 CD19_8/1/08=CD19_8/1/08 CD3_39661=CD3_39661 CD3_39804=CD3_39804 CD3_39811=CD3_39811 CD3_39840=CD3_39840 CD34_39629=CD34_39629 CD34_39661=CD34_39661 CD34_39804=CD34_39804 CD34_39811=CD34_39811 CD34_39889=CD34_39889 culturedCD34_2/20/09=culturedCD34_2/20/09 H-22510=H-22510 H-22676=H-22676 H-22727=H-22727 NA=NA pancreaticisletsnormal_0/0/00=pancreaticisletsnormal_0/0/00 pancreaticisletsnormal_3/27/09=pancreaticisletsnormal_3/27/09 RO01480=RO01480 RO01492=RO01492 RO01508=RO01508 RO01517=RO01517 RO01536=RO01536 RO01549=RO01549 Solexa-12524=Solexa-12524 Solexa-8039=Solexa-8039 Solexa-10213/Solexa-15380=Solexa-10213/Solexa-15380 Solexa-10219=Solexa-10219 Solexa-10232=Solexa-10232 Solexa-10398=Solexa-10398 Solexa-11733=Solexa-11733 Solexa-11734=Solexa-11734 Solexa-12522=Solexa-12522 Solexa-12523=Solexa-12523 Solexa-12532=Solexa-12532 Solexa-12609=Solexa-12609 Solexa-12610=Solexa-12610 Solexa-12611=Solexa-12611 Solexa-12613=Solexa-12613 Solexa-12678=Solexa-12678 Solexa-12681=Solexa-12681 Solexa-12682=Solexa-12682 Solexa-12683/Solexa-16494=Solexa-12683/Solexa-16494 Solexa-13061=Solexa-13061 Solexa-13062=Solexa-13062 Solexa-14961=Solexa-14961 Solexa-14962=Solexa-14962 Solexa-15157=Solexa-15157 Solexa-15159=Solexa-15159 Solexa-15173=Solexa-15173 Solexa-15381=Solexa-15381 Solexa-15382=Solexa-15382 Solexa-15383=Solexa-15383 Solexa-15474=Solexa-15474 Solexa-15475=Solexa-15475 Solexa-16493=Solexa-16493 Solexa-19747=Solexa-19747 Solexa-19756=Solexa-19756 Solexa-19774=Solexa-19774 Solexa-19791=Solexa-19791 Solexa-19808=Solexa-19808 Solexa-20732=Solexa-20732 Solexa-20743=Solexa-20743 Solexa-20747=Solexa-20747 Solexa-20749=Solexa-20749 Solexa-20763=Solexa-20763 Solexa-20764=Solexa-20764 Solexa-20765=Solexa-20765 Solexa-10531=Solexa-10531 Solexa-12525=Solexa-12525 Solexa-10529=Solexa-10529 Solexa-8038=Solexa-8038 Solexa-12526=Solexa-12526 DS11759=DS11759 DS11764=DS11764
dimensions dimensionX=assayType dimensionY=sampleType
sortOrder assayType=+ sampleType=+ donorID=+
dividers assayType
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 4
visibility hide
type bed 3
track EdaccRelease2BIHistoneModificationViewCOV
shortLabel Coverage
view COV
maxHeightPixels 64:32:16
subTrack EdaccRelease2BIHistone
track CM_H3K36me3_32
bigDataUrl CM_H3K36me3_32.bigWig
shortLabel CM H3K36me3 32
longLabel Colonic Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2745 Pcnt=55 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K36me3 donorID=32
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2745 Hotspot_Percentile=55 GSM=GSM621672 dateUnrestricted=2011-08-12
track AN_Input_7
bigDataUrl AN_Input_7.bigWig
shortLabel AN Input 7
longLabel Adipose Nuclei Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0063 Pcnt=21 DonorID:7)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AN assayType=Input donorID=7
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0063 Hotspot_Percentile=21 GSM=GSM621401 dateUnrestricted=2011-08-12
track MSCC_H3K9me3_hSKM2
bigDataUrl MSCC_H3K9me3_hSKM2.bigWig
shortLabel MS H3K9me3 2
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0538 Pcnt=14 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9me3 donorID=NA
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0538 Hotspot_Percentile=14 GSM=GSM621747 dateUnrestricted=2011-08-12
track CD34_H3K4me3_0_09
bigDataUrl CD34_H3K4me3_0_09.bigWig
shortLabel CD34 H3K4me3 20
longLabel CD34 Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4645 Pcnt=64 DonorID:culturedCD34_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=H3K4me3 donorID=culturedCD34_2/20/09
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4645 Hotspot_Percentile=64 GSM=GSM537629 dateUnrestricted=2011-01-28
track PI_H3K4me1_7_09
bigDataUrl PI_H3K4me1_7_09.bigWig
shortLabel PI H3K4me1 27
longLabel Pancreatic Islets H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3816 Pcnt=56 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K4me1 donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.3816 Hotspot_Percentile=56 GSM=GSM537642 dateUnrestricted=2011-01-28
track RM_H3K9me3_29
bigDataUrl RM_H3K9me3_29.bigWig
shortLabel RM H3K9me3 29
longLabel Rectal Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0546 Pcnt=15 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K9me3 donorID=29
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0546 Hotspot_Percentile=15 GSM=GSM621633 dateUnrestricted=2011-08-12
track CD34_H3K4me1_9889
bigDataUrl CD34_H3K4me1_9889.bigWig
shortLabel CD34 H3K4me1 89
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5216 Pcnt=81 DonorID:CD34_39889)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K4me1 donorID=CD34_39889
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5216 Hotspot_Percentile=81 GSM=GSM486707 dateUnrestricted=2011-02-11
track AL_H3K27me3_3
bigDataUrl AL_H3K27me3_3.bigWig
shortLabel AL H3K27me3 3.0
longLabel Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3609 Pcnt=90 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K27me3 donorID=3.0
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1540736 Hotspot_Score=0.3609 Hotspot_Percentile=90 GSM=GSM537698 dateUnrestricted=2011-01-28
track CD15_H3K4me3_23
bigDataUrl CD15_H3K4me3_23.bigWig
shortLabel CD15 H3K4me3 23.0
longLabel CD15 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.7312 Pcnt=97 DonorID:23.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD15 assayType=H3K4me3 donorID=23.0
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD15 Primary Cells" markers=CD15+ donor_id=23.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.7312 Hotspot_Percentile=97 GSM=GSM537702 dateUnrestricted=2011-01-28
track FK_H3K9me3_2676
bigDataUrl FK_H3K9me3_2676.bigWig
shortLabel FK H3K9me3 76
longLabel Fetal Kidney H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0385 Pcnt=2 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K9me3 donorID=H-22676
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0385 Hotspot_Percentile=2 GSM=GSM621441 dateUnrestricted=2011-08-12
track SM_H3K36me3_62
bigDataUrl SM_H3K36me3_62.bigWig
shortLabel SM H3K36me3 62
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2021 Pcnt=30 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K36me3 donorID=62
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2021 Hotspot_Percentile=30 GSM=GSM621684 dateUnrestricted=2011-08-12
track AL_H3K9ac_4
bigDataUrl AL_H3K9ac_4.bigWig
shortLabel AL H3K9ac 4
longLabel Adult Liver H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2282 Pcnt=43 DonorID:4)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K9ac donorID=4
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2282 Hotspot_Percentile=43 GSM=GSM621630 dateUnrestricted=2011-08-12
track CD4M_Input_20
bigDataUrl CD4M_Input_20.bigWig
shortLabel CD4M Input 20
longLabel CD4 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0599 Pcnt=47 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD4M assayType=Input donorID=20
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type="Memory CD4" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0599 Hotspot_Percentile=47 GSM=GSM621447 dateUnrestricted=2011-08-12
track FB_H3K27me3_2510
bigDataUrl FB_H3K27me3_2510.bigWig
shortLabel FB H3K27me3 10
longLabel Fetal Brain H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0944 Pcnt=15 DonorID:H-22510)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FB assayType=H3K27me3 donorID=H-22510
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0944 Hotspot_Percentile=15 GSM=GSM621393 dateUnrestricted=2011-08-12
track CM_Input_32
bigDataUrl CM_Input_32.bigWig
shortLabel CM Input 32
longLabel Colonic Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0221 Pcnt=36 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=Input donorID=32
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0221 Hotspot_Percentile=36 GSM=GSM621669 dateUnrestricted=2011-08-12
track ESI3_H3K4me1_5382
bigDataUrl ESI3_H3K4me1_5382.bigWig
shortLabel ESI3 H3K4me1 82
longLabel ES-I3 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4313 Pcnt=70 Library:Solexa-15382)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K4me1 donorID=Solexa-15382
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4313 Hotspot_Percentile=70 GSM=GSM537668 dateUnrestricted=2011-01-28
track ESWA7_H3K36me3_2610
bigDataUrl ESWA7_H3K36me3_2610.bigWig
shortLabel ESWA7 H3K36me3 10
longLabel ES-WA7 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1545 Pcnt=13 Library:Solexa-12610)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESWA7 assayType=H3K36me3 donorID=Solexa-12610
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.1545 Hotspot_Percentile=13 GSM=GSM537640 dateUnrestricted=2011-01-28
track AN_H3K4me3_7
bigDataUrl AN_H3K4me3_7.bigWig
shortLabel AN H3K4me3 7
longLabel Adipose Nuclei H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3453 Pcnt=39 DonorID:7)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AN assayType=H3K4me3 donorID=7
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3453 Hotspot_Percentile=39 GSM=GSM621435 dateUnrestricted=2011-08-12
track AL_H3K4me1_5
bigDataUrl AL_H3K4me1_5.bigWig
shortLabel AL H3K4me1 5
longLabel Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3989 Pcnt=60 DonorID:5)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K4me1 donorID=5
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=5 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3989 Hotspot_Percentile=60 GSM=GSM621654 dateUnrestricted=2011-08-12
track H1_H3K4me1_3061
bigDataUrl H1_H3K4me1_3061.bigWig
shortLabel H1 H3K4me1 61
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2723 Pcnt=19 Library:Solexa-13061)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=Solexa-13061
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2723 Hotspot_Percentile=19 GSM=GSM537679 dateUnrestricted=2011-01-28
track CD34_H3K27me3_0_09
bigDataUrl CD34_H3K27me3_0_09.bigWig
shortLabel CD34 H3K27me3 20
longLabel CD34 Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3021 Pcnt=79 DonorID:culturedCD34_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=H3K27me3 donorID=culturedCD34_2/20/09
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3021 Hotspot_Percentile=79 GSM=GSM537656 dateUnrestricted=2011-01-28
track CD3_H3K9me3_9840
bigDataUrl CD3_H3K9me3_9840.bigWig
shortLabel CD3 H3K9me3 40
longLabel CD3 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2465 Pcnt=80 DonorID:CD3_39840)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K9me3 donorID=CD3_39840
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39840 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2465 Hotspot_Percentile=80 GSM=GSM537645 dateUnrestricted=2011-01-28
track CD34_H3K36me3_1536
bigDataUrl CD34_H3K36me3_1536.bigWig
shortLabel MCD34 H3K36me3 36
longLabel Mobilized CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1295 Pcnt=8 DonorID:RO01536)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K36me3 donorID=RO01536
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1295 Hotspot_Percentile=8 GSM=GSM621666 dateUnrestricted=2011-08-12
track H1_Input_0531
bigDataUrl H1_Input_0531.bigWig
shortLabel H1 Input 31
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0894 Pcnt=73 Library:Solexa-10531)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=Solexa-10531
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39805 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0894 Hotspot_Percentile=73 GSM=GSM433179 dateUnrestricted=2010-05-05
track AL_H3K9ac_3
bigDataUrl AL_H3K9ac_3.bigWig
shortLabel AL H3K9ac 3.0
longLabel Adult Liver H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1628 Pcnt=29 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K9ac donorID=3.0
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.1628 Hotspot_Percentile=29 GSM=GSM537705 dateUnrestricted=2011-01-28
track CD19_H3K27me3_2_08
bigDataUrl CD19_H3K27me3_2_08.bigWig
shortLabel CD19 H3K27me3 22
longLabel CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2421 Pcnt=56 DonorID:CD19_12/22/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K27me3 donorID=CD19_12/22/08
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/22/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2421 Hotspot_Percentile=56 GSM=GSM537634 dateUnrestricted=2011-01-28
track MSCC_H3K4me2_hSKM2
bigDataUrl MSCC_H3K4me2_hSKM2.bigWig
shortLabel MS H3K4me2 2
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5496 Pcnt=38 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me2 donorID=NA
type bigWig 0 30
noInherit on
color 0,82,41
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5496 Hotspot_Percentile=38 GSM=GSM621750 dateUnrestricted=2011-08-12
track iPS20b_H3K27me3_7Me3
bigDataUrl iPS20b_H3K27me3_7Me3.bigWig
shortLabel iPS20b H3K27me3 e3
longLabel iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2568 Pcnt=62 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2568 Hotspot_Percentile=62 GSM=GSM621416 dateUnrestricted=2011-08-12
track DM_H3K4me1_61
bigDataUrl DM_H3K4me1_61.bigWig
shortLabel DM H3K4me1 61
longLabel Duodenum Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2163 Pcnt=16 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K4me1 donorID=61
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2163 Hotspot_Percentile=16 GSM=GSM621403 dateUnrestricted=2011-08-12
track AL_H3K9me3_3
bigDataUrl AL_H3K9me3_3.bigWig
shortLabel AL H3K9me3 3.0
longLabel Adult Liver H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1451 Pcnt=44 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K9me3 donorID=3.0
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1451 Hotspot_Percentile=44 GSM=GSM537695 dateUnrestricted=2011-01-28
track iPS20b_Input__WCE
bigDataUrl iPS20b_Input__WCE.bigWig
shortLabel iPS20b Input CE
longLabel iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0083 Pcnt=26 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0083 Hotspot_Percentile=26 GSM=GSM621412 dateUnrestricted=2011-08-12
track FL_H3K4me3_2676
bigDataUrl FL_H3K4me3_2676.bigWig
shortLabel FL H3K4me3 76
longLabel Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2218 Pcnt=13 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K4me3 donorID=H-22676
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2218 Hotspot_Percentile=13 GSM=GSM621405 dateUnrestricted=2011-08-12
track SSM_H3K4me3_28
bigDataUrl SSM_H3K4me3_28.bigWig
shortLabel SSM H3K4me3 28
longLabel Stomach Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4503 Pcnt=62 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=H3K4me3 donorID=28
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4503 Hotspot_Percentile=62 GSM=GSM621645 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1517
bigDataUrl MCD34_H3K4me3_1517.bigWig
shortLabel MCD34 H3K4me3 17
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5403 Pcnt=77 DonorID:RO01517)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01517
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01517" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5403 Hotspot_Percentile=77 GSM=GSM621404 dateUnrestricted=2011-08-12
track SM_H3K4me1_62
bigDataUrl SM_H3K4me1_62.bigWig
shortLabel SM H3K4me1 62
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.363 Pcnt=44 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me1 donorID=62
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.363 Hotspot_Percentile=44 GSM=GSM621686 dateUnrestricted=2011-08-12
track H1_H3K9me3_2525
bigDataUrl H1_H3K9me3_2525.bigWig
shortLabel H1 H3K9me3 25
longLabel H1 H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1525 Pcnt=46 Library:Solexa-12525)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=Solexa-12525
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1525 Hotspot_Percentile=46 GSM=GSM433174 dateUnrestricted=2010-05-05
track MCD34_H3K4me3_1480
bigDataUrl MCD34_H3K4me3_1480.bigWig
shortLabel MCD34 H3K4me3 80
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2457 Pcnt=16 DonorID:RO01480)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01480
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2457 Hotspot_Percentile=16 GSM=GSM621437 dateUnrestricted=2011-08-12
track PI_H3K36me3_7_09
bigDataUrl PI_H3K36me3_7_09.bigWig
shortLabel PI H3K36me3 27
longLabel Pancreatic Islets H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.27 Pcnt=49 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K36me3 donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=490367 Hotspot_Score=0.27 Hotspot_Percentile=49 GSM=GSM537661 dateUnrestricted=2011-01-28
track SSM_H3K36me3_28
bigDataUrl SSM_H3K36me3_28.bigWig
shortLabel SSM H3K36me3 28
longLabel Stomach Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2366 Pcnt=40 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=H3K36me3 donorID=28
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2366 Hotspot_Percentile=40 GSM=GSM621649 dateUnrestricted=2011-08-12
track iPS18c_Input__WCE
bigDataUrl iPS18c_Input__WCE.bigWig
shortLabel iPS18c Input CE
longLabel iPS 18c Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-18c differentiation_method=NA batch=hiPS-18c-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 Hotspot_Percentile=17 GSM=GSM621407 dateUnrestricted=2011-08-12
track ESI3_H3K9ac_2682
bigDataUrl ESI3_H3K9ac_2682.bigWig
shortLabel ESI3 H3K9ac 82
longLabel ES-I3 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2532 Pcnt=54 Library:Solexa-12682)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K9ac donorID=Solexa-12682
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.2532 Hotspot_Percentile=54 GSM=GSM537624 dateUnrestricted=2011-01-28
track MCD34_H3K4me1_8_09
bigDataUrl MCD34_H3K4me1_8_09.bigWig
shortLabel MCD34 H3K4me1 28
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5335 Pcnt=86 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me1 donorID=RO01508
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5335 Hotspot_Percentile=86 GSM=GSM537650 dateUnrestricted=2011-01-28
track RSM_H3K36me3_30
bigDataUrl RSM_H3K36me3_30.bigWig
shortLabel RSM H3K36me3 30
longLabel Rectal Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1552 Pcnt=15 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=H3K36me3 donorID=30
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1552 Hotspot_Percentile=15 GSM=GSM621656 dateUnrestricted=2011-08-12
track CD19_H3K36me3_1_08
bigDataUrl CD19_H3K36me3_1_08.bigWig
shortLabel CD19 H3K36me3 1
longLabel CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3103 Pcnt=66 DonorID:CD19_8/1/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K36me3 donorID=CD19_8/1/08
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.3103 Hotspot_Percentile=66 GSM=GSM537621 dateUnrestricted=2011-01-28
track BMDMSC_H3K27me3_57
bigDataUrl BMDMSC_H3K27me3_57.bigWig
shortLabel BMDMSC H3K27me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1741 Pcnt=42 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K27me3 donorID=57
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1741 Hotspot_Percentile=42 GSM=GSM621454 dateUnrestricted=2011-08-12
track CD3_H3K36me3_9804
bigDataUrl CD3_H3K36me3_9804.bigWig
shortLabel CD3 H3K36me3 04
longLabel CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4455 Pcnt=92 DonorID:CD3_39804)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K36me3 donorID=CD3_39804
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.4455 Hotspot_Percentile=92 GSM=GSM537666 dateUnrestricted=2011-01-28
track CD19_Input_1_08
bigDataUrl CD19_Input_1_08.bigWig
shortLabel CD19 Input 1
longLabel CD19 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0634 Pcnt=52 DonorID:CD19_8/1/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=Input donorID=CD19_8/1/08
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0634 Hotspot_Percentile=52 GSM=GSM537620 dateUnrestricted=2011-01-28
track MSCC_H3K4me1_hSKM1
bigDataUrl MSCC_H3K4me1_hSKM1.bigWig
shortLabel MS H3K4me1 1
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.512 Pcnt=79 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me1 donorID=NA
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.512 Hotspot_Percentile=79 GSM=GSM621741 dateUnrestricted=2011-08-12
track iPS15b_Input__WCE
bigDataUrl iPS15b_Input__WCE.bigWig
shortLabel iPS15b Input CE
longLabel iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0085 Pcnt=27 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-15b differentiation_method=NA batch=hiPS-15b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0085 Hotspot_Percentile=27 GSM=GSM621444 dateUnrestricted=2011-08-12
track AL_H3K27me3_5
bigDataUrl AL_H3K27me3_5.bigWig
shortLabel AL H3K27me3 5.0
longLabel Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=38 DonorID:5.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K27me3 donorID=5.0
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1540736 Hotspot_Score=0.1637 Hotspot_Percentile=38 GSM=GSM537707 dateUnrestricted=2011-01-28
track ADMSC_H3K4me1_1
bigDataUrl ADMSC_H3K4me1_1.bigWig
shortLabel ADMSC H3K4me1 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6144 Pcnt=98 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K4me1 donorID=1
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6144 Hotspot_Percentile=98 GSM=GSM621418 dateUnrestricted=2011-08-12
track FK_H3K9ac_2676
bigDataUrl FK_H3K9ac_2676.bigWig
shortLabel FK H3K9ac 76
longLabel Fetal Kidney H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.154 Pcnt=20 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K9ac donorID=H-22676
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.154 Hotspot_Percentile=20 GSM=GSM621430 dateUnrestricted=2011-08-12
track ESI3_Input__WCE
bigDataUrl ESI3_Input__WCE.bigWig
shortLabel ESI3 Input CE
longLabel ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.008 Pcnt=24 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=45 line="hES I3 TESR" differentiation_method=NA batch="hES I3 TESR-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.008 Hotspot_Percentile=24 GSM=GSM621386 dateUnrestricted=2011-08-12
track ESI3_H3K9me3_5475
bigDataUrl ESI3_H3K9me3_5475.bigWig
shortLabel ESI3 H3K9me3 75
longLabel ES-I3 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1778 Pcnt=54 Library:Solexa-15475)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K9me3 donorID=Solexa-15475
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1778 Hotspot_Percentile=54 GSM=GSM537664 dateUnrestricted=2011-01-28
track SM_H3K4me3_63
bigDataUrl SM_H3K4me3_63.bigWig
shortLabel SM H3K4me3 63
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2763 Pcnt=25 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me3 donorID=63
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2763 Hotspot_Percentile=25 GSM=GSM621694 dateUnrestricted=2011-08-12
track iPS18c_H3K36me3_9808
bigDataUrl iPS18c_H3K36me3_9808.bigWig
shortLabel iPS18c H3K36me3 08
longLabel iPS 18c H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3174 Pcnt=68 Library:Solexa-19808)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K36me3 donorID=Solexa-19808
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.3174 Hotspot_Percentile=68 GSM=GSM537675 dateUnrestricted=2011-01-28
track FH_H3K27me3_2727
bigDataUrl FH_H3K27me3_2727.bigWig
shortLabel FH H3K27me3 27
longLabel Fetal Heart H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1324 Pcnt=27 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FH assayType=H3K27me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1324 Hotspot_Percentile=27 GSM=GSM621450 dateUnrestricted=2011-08-12
track SM_H3K4me3_19
bigDataUrl SM_H3K4me3_19.bigWig
shortLabel SM H3K4me3 19
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2829 Pcnt=26 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me3 donorID=19
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2829 Hotspot_Percentile=26 GSM=GSM621637 dateUnrestricted=2011-08-12
track CD3_Input_9661
bigDataUrl CD3_Input_9661.bigWig
shortLabel CD3 Input 61
longLabel CD3 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0892 Pcnt=71 DonorID:CD3_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=Input donorID=CD3_39661
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0892 Hotspot_Percentile=71 GSM=GSM537619 dateUnrestricted=2011-01-28
track MSCC_H3K9ac_hSKM3
bigDataUrl MSCC_H3K9ac_hSKM3.bigWig
shortLabel MS H3K9ac 3
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5156 Pcnt=89 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9ac donorID=NA
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5156 Hotspot_Percentile=89 GSM=GSM621757 dateUnrestricted=2011-08-12
track AL_H3K4me3_4
bigDataUrl AL_H3K4me3_4.bigWig
shortLabel AL H3K4me3 4
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2413 Pcnt=15 DonorID:4)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K4me3 donorID=4
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2413 Hotspot_Percentile=15 GSM=GSM621675 dateUnrestricted=2011-08-12
track ADMSC_H3K9ac_1
bigDataUrl ADMSC_H3K9ac_1.bigWig
shortLabel ADMSC H3K9ac 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.395 Pcnt=71 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K9ac donorID=1
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.395 Hotspot_Percentile=71 GSM=GSM621394 dateUnrestricted=2011-08-12
track CD34_H3K36me3_9661
bigDataUrl CD34_H3K36me3_9661.bigWig
shortLabel CD34 H3K36me3 61
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3891 Pcnt=87 DonorID:CD34_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K36me3 donorID=CD34_39661
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3891 Hotspot_Percentile=87 GSM=GSM486705 dateUnrestricted=2010-10-06
track AL_Input_4
bigDataUrl AL_Input_4.bigWig
shortLabel AL Input 4
longLabel Adult Liver Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0846 Pcnt=68 DonorID:4)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=Input donorID=4
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0846 Hotspot_Percentile=68 GSM=GSM621629 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_8_09
bigDataUrl MCD34_H3K9me3_8_09.bigWig
shortLabel MCD34 H3K9me3 28
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3479 Pcnt=95 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K9me3 donorID=RO01508
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3479 Hotspot_Percentile=95 GSM=GSM537663 dateUnrestricted=2011-01-28
track Treg_H3K9me3_20
bigDataUrl Treg_H3K9me3_20.bigWig
shortLabel Treg H3K9me3 20
longLabel Treg Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1752 Pcnt=53 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Treg assayType=H3K9me3 donorID=20
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1752 Hotspot_Percentile=53 GSM=GSM621389 dateUnrestricted=2011-08-12
track AL_H3K9me3_5
bigDataUrl AL_H3K9me3_5.bigWig
shortLabel AL H3K9me3 5.0
longLabel Adult Liver H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1618 Pcnt=49 DonorID:5.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K9me3 donorID=5.0
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1618 Hotspot_Percentile=49 GSM=GSM537710 dateUnrestricted=2011-01-28
track RSM_H3K9ac_30
bigDataUrl RSM_H3K9ac_30.bigWig
shortLabel RSM H3K9ac 30
longLabel Rectal Smooth Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1036 Pcnt=3 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=H3K9ac donorID=30
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1036 Hotspot_Percentile=3 GSM=GSM621661 dateUnrestricted=2011-08-12
track CD3_H3K4me1_9840
bigDataUrl CD3_H3K4me1_9840.bigWig
shortLabel CD3 H3K4me1 40
longLabel CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4907 Pcnt=77 DonorID:CD3_39840)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K4me1 donorID=CD3_39840
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39840 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4907 Hotspot_Percentile=77 GSM=GSM537646 dateUnrestricted=2011-01-28
track CD34_H3K9me3_0_09
bigDataUrl CD34_H3K9me3_0_09.bigWig
shortLabel CD34 H3K9me3 20
longLabel CD34 Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2666 Pcnt=83 DonorID:culturedCD34_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=H3K9me3 donorID=culturedCD34_2/20/09
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2666 Hotspot_Percentile=83 GSM=GSM537653 dateUnrestricted=2011-01-28
track MSCC_Input_hSKM2
bigDataUrl MSCC_Input_hSKM2.bigWig
shortLabel MS Input 2
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0303 Pcnt=41 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0303 Hotspot_Percentile=41 GSM=GSM621746 dateUnrestricted=2011-08-12
track SM_Input_62
bigDataUrl SM_Input_62.bigWig
shortLabel SM Input 62
longLabel Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=Input donorID=62
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0033 Hotspot_Percentile=5 GSM=GSM621680 dateUnrestricted=2011-08-12
track CD19_H3K9me3_9_08
bigDataUrl CD19_H3K9me3_9_08.bigWig
shortLabel CD19 H3K9me3 29
longLabel CD19 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2197 Pcnt=76 DonorID:CD19_12/29/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K9me3 donorID=CD19_12/29/08
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/29/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2197 Hotspot_Percentile=76 GSM=GSM537635 dateUnrestricted=2011-01-28
track iPS18c_H3K4me3_9747
bigDataUrl iPS18c_H3K4me3_9747.bigWig
shortLabel iPS18c H3K4me3 47
longLabel iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5588 Pcnt=80 Library:Solexa-19747)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K4me3 donorID=Solexa-19747
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.5588 Hotspot_Percentile=80 GSM=GSM537676 dateUnrestricted=2011-01-28
track ESI3_Input_0219
bigDataUrl ESI3_Input_0219.bigWig
shortLabel ESI3 Input 19
longLabel ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0959 Pcnt=74 Library:Solexa-10219)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=Input donorID=Solexa-10219
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0959 Hotspot_Percentile=74 GSM=GSM537647 dateUnrestricted=2011-01-28
track MCD34_H3K36me3_1480
bigDataUrl MCD34_H3K36me3_1480.bigWig
shortLabel MCD34 H3K36me3 80
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1771 Pcnt=23 DonorID:RO01480)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K36me3 donorID=RO01480
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1771 Hotspot_Percentile=23 GSM=GSM621459 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1549
bigDataUrl MCD34_H3K4me3_1549.bigWig
shortLabel MCD34 H3K4me3 49
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5962 Pcnt=84 DonorID:RO01549)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01549
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5962 Hotspot_Percentile=84 GSM=GSM621439 dateUnrestricted=2011-08-12
track MCD34_H3K27me3_8_09
bigDataUrl MCD34_H3K27me3_8_09.bigWig
shortLabel MCD34 H3K27me3 28
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2825 Pcnt=73 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01508
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2825 Hotspot_Percentile=73 GSM=GSM537649 dateUnrestricted=2011-01-28
track CD34_Input_1536
bigDataUrl CD34_Input_1536.bigWig
shortLabel MCD34 Input 36
longLabel Mobilized CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0067 Pcnt=23 DonorID:RO01536)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01536
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0067 Hotspot_Percentile=23 GSM=GSM621689 dateUnrestricted=2011-08-12
track FL_H3K9ac_2727
bigDataUrl FL_H3K9ac_2727.bigWig
shortLabel FL H3K9ac 27
longLabel Fetal Lung H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1557 Pcnt=23 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K9ac donorID=H-22727
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1557 Hotspot_Percentile=23 GSM=GSM621400 dateUnrestricted=2011-08-12
track DM_H3K27me3_61
bigDataUrl DM_H3K27me3_61.bigWig
shortLabel DM H3K27me3 61
longLabel Duodenum Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0622 Pcnt=4 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K27me3 donorID=61
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0622 Hotspot_Percentile=4 GSM=GSM621460 dateUnrestricted=2011-08-12
track AN_H3K9me3_7
bigDataUrl AN_H3K9me3_7.bigWig
shortLabel AN H3K9me3 7
longLabel Adipose Nuclei H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0488 Pcnt=10 DonorID:7)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AN assayType=H3K9me3 donorID=7
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0488 Hotspot_Percentile=10 GSM=GSM621391 dateUnrestricted=2011-08-12
track CD34_H3K4me3_9629
bigDataUrl CD34_H3K4me3_9629.bigWig
shortLabel CD34 H3K4me3 29
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5312 Pcnt=74 DonorID:CD34_39629)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K4me3 donorID=CD34_39629
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39629 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.5312 Hotspot_Percentile=74 GSM=GSM486709 dateUnrestricted=2011-01-28
track CD34_H3K27me3_9661
bigDataUrl CD34_H3K27me3_9661.bigWig
shortLabel CD34 H3K27me3 61
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3095 Pcnt=83 DonorID:CD34_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K27me3 donorID=CD34_39661
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3095 Hotspot_Percentile=83 GSM=GSM486704 dateUnrestricted=2011-01-28
track RM_H3K27me3_29
bigDataUrl RM_H3K27me3_29.bigWig
shortLabel RM H3K27me3 29
longLabel Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0651 Pcnt=6 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K27me3 donorID=29
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0651 Hotspot_Percentile=6 GSM=GSM621650 dateUnrestricted=2011-08-12
track CD34_H3K36me3_9811
bigDataUrl CD34_H3K36me3_9811.bigWig
shortLabel CD34 H3K36me3 11
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3251 Pcnt=74 DonorID:CD34_39811)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K36me3 donorID=CD34_39811
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3251 Hotspot_Percentile=74 GSM=GSM486714 dateUnrestricted=2010-10-06
track SM_H3K9ac_63
bigDataUrl SM_H3K9ac_63.bigWig
shortLabel SM H3K9ac 63
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5013 Pcnt=86 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9ac donorID=63
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5013 Hotspot_Percentile=86 GSM=GSM621691 dateUnrestricted=2011-08-12
track ESWA7_H3K4me1_2611
bigDataUrl ESWA7_H3K4me1_2611.bigWig
shortLabel ESWA7 H3K4me1 11
longLabel ES-WA7 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4247 Pcnt=67 Library:Solexa-12611)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESWA7 assayType=H3K4me1 donorID=Solexa-12611
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4247 Hotspot_Percentile=67 GSM=GSM537641 dateUnrestricted=2011-01-28
track BMDMSC_H3K4me3_57
bigDataUrl BMDMSC_H3K4me3_57.bigWig
shortLabel BMDMSC H3K4me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6126 Pcnt=85 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K4me3 donorID=57
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6126 Hotspot_Percentile=85 GSM=GSM621422 dateUnrestricted=2011-08-12
track MSCC_H3K9me3_hSKM1
bigDataUrl MSCC_H3K9me3_hSKM1.bigWig
shortLabel MS H3K9me3 1
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0578 Pcnt=17 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9me3 donorID=NA
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0578 Hotspot_Percentile=17 GSM=GSM621744 dateUnrestricted=2011-08-12
track MSCC_H3K4me2_hSKM3
bigDataUrl MSCC_H3K4me2_hSKM3.bigWig
shortLabel MS H3K4me2 3
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5852 Pcnt=63 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me2 donorID=NA
type bigWig 0 30
noInherit on
color 0,82,41
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5852 Hotspot_Percentile=63 GSM=GSM621758 dateUnrestricted=2011-08-12
track CD19_H3K4me3_1_08
bigDataUrl CD19_H3K4me3_1_08.bigWig
shortLabel CD19 H3K4me3 1
longLabel CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3814 Pcnt=51 DonorID:CD19_8/1/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K4me3 donorID=CD19_8/1/08
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3814 Hotspot_Percentile=51 GSM=GSM537622 dateUnrestricted=2011-01-28
track Th17_H3K9me3_20
bigDataUrl Th17_H3K9me3_20.bigWig
shortLabel Th17 H3K9me3 20
longLabel Th17 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1903 Pcnt=63 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Th17 assayType=H3K9me3 donorID=20
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=Th17 donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1903 Hotspot_Percentile=63 GSM=GSM621428 dateUnrestricted=2011-08-12
track RSM_H3K27me3_30
bigDataUrl RSM_H3K27me3_30.bigWig
shortLabel RSM H3K27me3 30
longLabel Rectal Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0781 Pcnt=8 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=H3K27me3 donorID=30
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0781 Hotspot_Percentile=8 GSM=GSM621655 dateUnrestricted=2011-08-12
track iPS15b_H3K4me3_0743
bigDataUrl iPS15b_H3K4me3_0743.bigWig
shortLabel iPS15b H3K4me3 43
longLabel iPS 15b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3714 Pcnt=44 Library:Solexa-20743)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=H3K4me3 donorID=Solexa-20743
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.3714 Hotspot_Percentile=44 GSM=GSM537687 dateUnrestricted=2011-01-28
track CD34_H3K9me3_9889
bigDataUrl CD34_H3K9me3_9889.bigWig
shortLabel CD34 H3K9me3 89
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3378 Pcnt=93 DonorID:CD34_39889)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K9me3 donorID=CD34_39889
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3378 Hotspot_Percentile=93 GSM=GSM486710 dateUnrestricted=2010-10-06
track iPS18c_H3K9ac_9756
bigDataUrl iPS18c_H3K9ac_9756.bigWig
shortLabel iPS18c H3K9ac 56
longLabel iPS 18c H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2533 Pcnt=57 Library:Solexa-19756)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K9ac donorID=Solexa-19756
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.2533 Hotspot_Percentile=57 GSM=GSM537677 dateUnrestricted=2011-01-28
track MCD34_H3K36me3_8_09
bigDataUrl MCD34_H3K36me3_8_09.bigWig
shortLabel MCD34 H3K36me3 28
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4509 Pcnt=96 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K36me3 donorID=RO01508
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.4509 Hotspot_Percentile=96 GSM=GSM537651 dateUnrestricted=2011-01-28
track iPS11a_Input_1734
bigDataUrl iPS11a_Input_1734.bigWig
shortLabel iPS11a Input 34
longLabel iPS 11a Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0606 Pcnt=48 Library:Solexa-11734)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS11a assayType=Input donorID=Solexa-11734
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-11a lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=19 medium=KSR sex=Male batch=1/26/09 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0606 Hotspot_Percentile=48 GSM=GSM537693 dateUnrestricted=2011-01-28
track CM_H3K27me3_32
bigDataUrl CM_H3K27me3_32.bigWig
shortLabel CM H3K27me3 32
longLabel Colonic Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1847 Pcnt=44 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K27me3 donorID=32
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1847 Hotspot_Percentile=44 GSM=GSM621673 dateUnrestricted=2011-08-12
track CD34_H3K4me3_1492
bigDataUrl CD34_H3K4me3_1492.bigWig
shortLabel MCD34 H3K4me3 92
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2857 Pcnt=28 DonorID:RO01492)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01492
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Male biomaterial_type="Primary Cell" donor_id="UW RO 01492" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2857 Hotspot_Percentile=28 GSM=GSM621667 dateUnrestricted=2011-08-12
track iPS15b_H3K9me3_0732
bigDataUrl iPS15b_H3K9me3_0732.bigWig
shortLabel iPS15b H3K9me3 32
longLabel iPS 15b H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2184 Pcnt=75 Library:Solexa-20732)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=H3K9me3 donorID=Solexa-20732
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2184 Hotspot_Percentile=75 GSM=GSM537691 dateUnrestricted=2011-01-28
track Treg_Input_20
bigDataUrl Treg_Input_20.bigWig
shortLabel Treg Input 20
longLabel Treg Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=11 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Treg assayType=Input donorID=20
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 Hotspot_Percentile=11 GSM=GSM621453 dateUnrestricted=2011-08-12
track RM_H3K4me3_29
bigDataUrl RM_H3K4me3_29.bigWig
shortLabel RM H3K4me3 29
longLabel Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3461 Pcnt=41 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K4me3 donorID=29
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3461 Hotspot_Percentile=41 GSM=GSM621643 dateUnrestricted=2011-08-12
track AN_H3K4me1_7
bigDataUrl AN_H3K4me1_7.bigWig
shortLabel AN H3K4me1 7
longLabel Adipose Nuclei H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0885 Pcnt=2 DonorID:7)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AN assayType=H3K4me1 donorID=7
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0885 Hotspot_Percentile=2 GSM=GSM621425 dateUnrestricted=2011-08-12
track MCD34_Input_1549
bigDataUrl MCD34_Input_1549.bigWig
shortLabel MCD34 Input 49
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=9 DonorID:RO01549)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01549
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0042 Hotspot_Percentile=9 GSM=GSM621414 dateUnrestricted=2011-08-12
track PI_Input_7_09
bigDataUrl PI_Input_7_09.bigWig
shortLabel PI Input 27
longLabel Pancreatic Islets Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1354 Pcnt=80 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=Input donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.1354 Hotspot_Percentile=80 GSM=GSM537659 dateUnrestricted=2011-01-28
track CD34_Input_9661
bigDataUrl CD34_Input_9661.bigWig
shortLabel CD34 Input 61
longLabel CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0832 Pcnt=67 DonorID:CD34_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=Input donorID=CD34_39661
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0832 Hotspot_Percentile=67 GSM=GSM486702 dateUnrestricted=2010-10-06
track FL_H3K27me3_2727
bigDataUrl FL_H3K27me3_2727.bigWig
shortLabel FL H3K27me3 27
longLabel Fetal Lung H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1037 Pcnt=17 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K27me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1037 Hotspot_Percentile=17 GSM=GSM621390 dateUnrestricted=2011-08-12
track MSCC_Input_hSKM3
bigDataUrl MSCC_Input_hSKM3.bigWig
shortLabel MS Input 3
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0379 Pcnt=44 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0379 Hotspot_Percentile=44 GSM=GSM621756 dateUnrestricted=2011-08-12
track FH_H3K36me3_2727
bigDataUrl FH_H3K36me3_2727.bigWig
shortLabel FH H3K36me3 27
longLabel Fetal Heart H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.107 Pcnt=4 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FH assayType=H3K36me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.107 Hotspot_Percentile=4 GSM=GSM621392 dateUnrestricted=2011-08-12
track CD34_H3K27me3_9804
bigDataUrl CD34_H3K27me3_9804.bigWig
shortLabel CD34 H3K27me3 04
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=46 DonorID:CD34_39804)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K27me3 donorID=CD34_39804
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.214 Hotspot_Percentile=46 GSM=GSM486706 dateUnrestricted=2011-01-28
track SM_H3K36me3_19
bigDataUrl SM_H3K36me3_19.bigWig
shortLabel SM H3K36me3 19
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2706 Pcnt=51 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K36me3 donorID=19
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2706 Hotspot_Percentile=51 GSM=GSM621644 dateUnrestricted=2011-08-12
track FK_H3K4me3_2676
bigDataUrl FK_H3K4me3_2676.bigWig
shortLabel FK H3K4me3 76
longLabel Fetal Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2123 Pcnt=10 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K4me3 donorID=H-22676
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2123 Hotspot_Percentile=10 GSM=GSM621438 dateUnrestricted=2011-08-12
track SSM_Input_28
bigDataUrl SSM_Input_28.bigWig
shortLabel SSM Input 28
longLabel Stomach Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0611 Pcnt=50 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=Input donorID=28
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0611 Hotspot_Percentile=50 GSM=GSM621652 dateUnrestricted=2011-08-12
track RM_H3K4me1_29
bigDataUrl RM_H3K4me1_29.bigWig
shortLabel RM H3K4me1 29
longLabel Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1858 Pcnt=9 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K4me1 donorID=29
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1858 Hotspot_Percentile=9 GSM=GSM621639 dateUnrestricted=2011-08-12
track RSM_H3K9me3_30
bigDataUrl RSM_H3K9me3_30.bigWig
shortLabel RSM H3K9me3 30
longLabel Rectal Smooth Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0815 Pcnt=25 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=H3K9me3 donorID=30
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0815 Hotspot_Percentile=25 GSM=GSM621660 dateUnrestricted=2011-08-12
track SM_H3K4me1_63
bigDataUrl SM_H3K4me1_63.bigWig
shortLabel SM H3K4me1 63
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3679 Pcnt=47 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me1 donorID=63
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3679 Hotspot_Percentile=47 GSM=GSM621679 dateUnrestricted=2011-08-12
track FK_H3K36me3_2676
bigDataUrl FK_H3K36me3_2676.bigWig
shortLabel FK H3K36me3 76
longLabel Fetal Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1113 Pcnt=6 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K36me3 donorID=H-22676
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1113 Hotspot_Percentile=6 GSM=GSM621415 dateUnrestricted=2011-08-12
track RM_Input_29
bigDataUrl RM_Input_29.bigWig
shortLabel RM Input 29
longLabel Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0037 Pcnt=8 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=Input donorID=29
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0037 Hotspot_Percentile=8 GSM=GSM621647 dateUnrestricted=2011-08-12
track ESI3_H3K9me3_6494
bigDataUrl ESI3_H3K9me3_6494.bigWig
shortLabel ESI3 H3K9me3 94
longLabel ES-I3 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0703 Pcnt=24 Library:Solexa-12683/Solexa-16494)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K9me3 donorID=Solexa-12683/Solexa-16494
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.0703 Hotspot_Percentile=24 GSM=GSM537625 dateUnrestricted=2011-02-03
track SM_H3K9me3_62
bigDataUrl SM_H3K9me3_62.bigWig
shortLabel SM H3K9me3 62
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0487 Pcnt=8 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9me3 donorID=62
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0487 Hotspot_Percentile=8 GSM=GSM621681 dateUnrestricted=2011-08-12
track ESI3_H3K36me3_6493
bigDataUrl ESI3_H3K36me3_6493.bigWig
shortLabel ESI3 H3K36me3 93
longLabel ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2333 Pcnt=38 Library:Solexa-16493)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K36me3 donorID=Solexa-16493
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2333 Hotspot_Percentile=38 GSM=GSM537672 dateUnrestricted=2011-01-28
track ADMSC_H3K27me3_1
bigDataUrl ADMSC_H3K27me3_1.bigWig
shortLabel ADMSC H3K27me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0934 Pcnt=13 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K27me3 donorID=1
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0934 Hotspot_Percentile=13 GSM=GSM621420 dateUnrestricted=2011-08-12
track iPS20b_H3K9me3_0765
bigDataUrl iPS20b_H3K9me3_0765.bigWig
shortLabel iPS20b H3K9me3 65
longLabel iPS 20b H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1839 Pcnt=58 Library:Solexa-20765)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K9me3 donorID=Solexa-20765
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1839 Hotspot_Percentile=58 GSM=GSM537688 dateUnrestricted=2011-01-28
track CD34_H3K4me1_0_09
bigDataUrl CD34_H3K4me1_0_09.bigWig
shortLabel CD34 H3K4me1 20
longLabel CD34 Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4056 Pcnt=63 DonorID:culturedCD34_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=H3K4me1 donorID=culturedCD34_2/20/09
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.4056 Hotspot_Percentile=63 GSM=GSM537628 dateUnrestricted=2011-01-28
track Treg_H3K27me3_20
bigDataUrl Treg_H3K27me3_20.bigWig
shortLabel Treg H3K27me3 20
longLabel Treg Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1272 Pcnt=25 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Treg assayType=H3K27me3 donorID=20
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1272 Hotspot_Percentile=25 GSM=GSM621448 dateUnrestricted=2011-08-12
track MSCC_H3K27me3_hSKM3
bigDataUrl MSCC_H3K27me3_hSKM3.bigWig
shortLabel MS H3K27me3 3
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.173 Pcnt=40 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.173 Hotspot_Percentile=40 GSM=GSM621755 dateUnrestricted=2011-08-12
track iPS18c_H3K4me3_5173
bigDataUrl iPS18c_H3K4me3_5173.bigWig
shortLabel iPS18c H3K4me3 73
longLabel iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1963 Pcnt=5 Library:Solexa-15173)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K4me3 donorID=Solexa-15173
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.1963 Hotspot_Percentile=5 GSM=GSM537671 dateUnrestricted=2011-01-28
track MSCC_H3K4me1_hSKM2
bigDataUrl MSCC_H3K4me1_hSKM2.bigWig
shortLabel MS H3K4me1 2
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5688 Pcnt=91 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me1 donorID=NA
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5688 Hotspot_Percentile=91 GSM=GSM621752 dateUnrestricted=2011-08-12
track FB_H3K36me3_2510
bigDataUrl FB_H3K36me3_2510.bigWig
shortLabel FB H3K36me3 10
longLabel Fetal Brain H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0753 Pcnt=2 DonorID:H-22510)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FB assayType=H3K36me3 donorID=H-22510
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0753 Hotspot_Percentile=2 GSM=GSM621410 dateUnrestricted=2011-08-12
track AN_H3K36me3_7
bigDataUrl AN_H3K36me3_7.bigWig
shortLabel AN H3K36me3 7
longLabel Adipose Nuclei H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3075 Pcnt=64 DonorID:7)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AN assayType=H3K36me3 donorID=7
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3075 Hotspot_Percentile=64 GSM=GSM621461 dateUnrestricted=2011-08-12
track CD19_H3K36me3_9_08
bigDataUrl CD19_H3K36me3_9_08.bigWig
shortLabel CD19 H3K36me3 29
longLabel CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3741 Pcnt=83 DonorID:CD19_12/29/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K36me3 donorID=CD19_12/29/08
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/29/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3741 Hotspot_Percentile=83 GSM=GSM537630 dateUnrestricted=2011-01-28
track BMDMSC_H3K4me1_57
bigDataUrl BMDMSC_H3K4me1_57.bigWig
shortLabel BMDMSC H3K4me1 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6001 Pcnt=95 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K4me1 donorID=57
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6001 Hotspot_Percentile=95 GSM=GSM621402 dateUnrestricted=2011-08-12
track iPS15b_Input_5157
bigDataUrl iPS15b_Input_5157.bigWig
shortLabel iPS15b Input 57
longLabel iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-15157)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=Input donorID=Solexa-15157
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27.0 medium=KSR sex=Female batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537696 dateUnrestricted=2011-01-28
track H1_H3K9ac_4962
bigDataUrl H1_H3K9ac_4962.bigWig
shortLabel H1 H3K9ac 62
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1796 Pcnt=34 Library:Solexa-14962)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9ac donorID=Solexa-14962
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1796 Hotspot_Percentile=34 GSM=GSM537685 dateUnrestricted=2011-01-28
track MSCC_H3K36me3_hSKM2
bigDataUrl MSCC_H3K36me3_hSKM2.bigWig
shortLabel MS H3K36me3 2
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1966 Pcnt=28 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K36me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1966 Hotspot_Percentile=28 GSM=GSM621749 dateUnrestricted=2011-08-12
track ESI3_H3K4me3_5474
bigDataUrl ESI3_H3K4me3_5474.bigWig
shortLabel ESI3 H3K4me3 74
longLabel ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3698 Pcnt=43 Library:Solexa-15474)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K4me3 donorID=Solexa-15474
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.3698 Hotspot_Percentile=43 GSM=GSM537665 dateUnrestricted=2011-01-28
track iPS20b_H3K27me3_5159
bigDataUrl iPS20b_H3K27me3_5159.bigWig
shortLabel iPS20b H3K27me3 59
longLabel iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2299 Pcnt=52 Library:Solexa-15159)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K27me3 donorID=Solexa-15159
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2299 Hotspot_Percentile=52 GSM=GSM537700 dateUnrestricted=2011-01-28
track CD19_H3K4me3_2_08
bigDataUrl CD19_H3K4me3_2_08.bigWig
shortLabel CD19 H3K4me3 22
longLabel CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3823 Pcnt=52 DonorID:CD19_12/22/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K4me3 donorID=CD19_12/22/08
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/22/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3823 Hotspot_Percentile=52 GSM=GSM537632 dateUnrestricted=2011-01-28
track MSCC_H3K4me1_hSKM3
bigDataUrl MSCC_H3K4me1_hSKM3.bigWig
shortLabel MS H3K4me1 3
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5267 Pcnt=84 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me1 donorID=NA
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5267 Hotspot_Percentile=84 GSM=GSM621759 dateUnrestricted=2011-08-12
track AK_H3K9me3_7
bigDataUrl AK_H3K9me3_7.bigWig
shortLabel AK H3K9me3 27
longLabel Adult Kidney H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0388 Pcnt=3 DonorID:27)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AK assayType=H3K9me3 donorID=27
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0388 Hotspot_Percentile=3 GSM=GSM621651 dateUnrestricted=2011-08-12
track MSCC_H3K4me2_hSKM1
bigDataUrl MSCC_H3K4me2_hSKM1.bigWig
shortLabel MS H3K4me2 1
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.545 Pcnt=25 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me2 donorID=NA
type bigWig 0 30
noInherit on
color 0,82,41
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.545 Hotspot_Percentile=25 GSM=GSM621742 dateUnrestricted=2011-08-12
track RM_H3K9ac_29
bigDataUrl RM_H3K9ac_29.bigWig
shortLabel RM H3K9ac 29
longLabel Rectal Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1351 Pcnt=11 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K9ac donorID=29
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1351 Hotspot_Percentile=11 GSM=GSM621636 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_1480
bigDataUrl MCD34_H3K9me3_1480.bigWig
shortLabel MCD34 H3K9me3 80
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0994 Pcnt=34 DonorID:RO01480)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K9me3 donorID=RO01480
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0994 Hotspot_Percentile=34 GSM=GSM621399 dateUnrestricted=2011-08-12
track AL_H3K4me3_5
bigDataUrl AL_H3K4me3_5.bigWig
shortLabel AL H3K4me3 5.0
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA DonorID:5.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K4me3 donorID=5.0
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537709 dateUnrestricted=2011-01-28
track SSM_H3K27me3_28
bigDataUrl SSM_H3K27me3_28.bigWig
shortLabel SSM H3K27me3 28
longLabel Stomach Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1122 Pcnt=19 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=H3K27me3 donorID=28
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1122 Hotspot_Percentile=19 GSM=GSM621635 dateUnrestricted=2011-08-12
track H1_H3K27me3_2523
bigDataUrl H1_H3K27me3_2523.bigWig
shortLabel H1 H3K27me3 23
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3386 Pcnt=87 Library:Solexa-12523)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=Solexa-12523
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3386 Hotspot_Percentile=87 GSM=GSM537683 dateUnrestricted=2011-01-28
track CD3_H3K4me3_9661
bigDataUrl CD3_H3K4me3_9661.bigWig
shortLabel CD3 H3K4me3 61
longLabel CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4738 Pcnt=66 DonorID:CD3_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K4me3 donorID=CD3_39661
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=331024 Hotspot_Score=0.4738 Hotspot_Percentile=66 GSM=GSM537615 dateUnrestricted=2011-01-28
track FB_H3K4me3_2510
bigDataUrl FB_H3K4me3_2510.bigWig
shortLabel FB H3K4me3 10
longLabel Fetal Brain H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1128 Pcnt=2 DonorID:H-22510)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FB assayType=H3K4me3 donorID=H-22510
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1128 Hotspot_Percentile=2 GSM=GSM621457 dateUnrestricted=2011-08-12
track BMDMSC_H3K9ac_57
bigDataUrl BMDMSC_H3K9ac_57.bigWig
shortLabel BMDMSC H3K9ac 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4141 Pcnt=74 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K9ac donorID=57
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4141 Hotspot_Percentile=74 GSM=GSM621442 dateUnrestricted=2011-08-12
track RM_H3K9me3_31
bigDataUrl RM_H3K9me3_31.bigWig
shortLabel RM H3K9me3 31
longLabel Rectal Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0407 Pcnt=5 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K9me3 donorID=31
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0407 Hotspot_Percentile=5 GSM=GSM621678 dateUnrestricted=2011-08-12
track H1_H3K36me3_2524
bigDataUrl H1_H3K36me3_2524.bigWig
shortLabel H1 H3K36me3 24
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1645 Pcnt=19 DonorID:Solexa-12524)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=Solexa-12524
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.1645 Hotspot_Percentile=19 GSM=GSM433176 dateUnrestricted=2010-05-05
track H1_H3K4me1_0529
bigDataUrl H1_H3K4me1_0529.bigWig
shortLabel H1 H3K4me1 29
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2785 Pcnt=21 Library:Solexa-10529)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=Solexa-10529
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2785 Hotspot_Percentile=21 GSM=GSM433177 dateUnrestricted=2010-05-05
track PI_H3K9ac_7_09
bigDataUrl PI_H3K9ac_7_09.bigWig
shortLabel PI H3K9ac 27
longLabel Pancreatic Islets H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3653 Pcnt=69 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K9ac donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.3653 Hotspot_Percentile=69 GSM=GSM537660 dateUnrestricted=2011-01-28
track DM_H3K9me3_61
bigDataUrl DM_H3K9me3_61.bigWig
shortLabel DM H3K9me3 61
longLabel Duodenum Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0935 Pcnt=32 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K9me3 donorID=61
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0935 Hotspot_Percentile=32 GSM=GSM621395 dateUnrestricted=2011-08-12
track H1_H3K27me3_8039
bigDataUrl H1_H3K27me3_8039.bigWig
shortLabel H1 H3K27me3 39
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2783 Pcnt=71 DonorID:Solexa-8039)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=Solexa-8039
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1387952 Hotspot_Score=0.2783 Hotspot_Percentile=71 GSM=GSM433167 dateUnrestricted=2010-05-05
track iPS18c_H3K27me3_9791
bigDataUrl iPS18c_H3K27me3_9791.bigWig
shortLabel iPS18c H3K27me3 91
longLabel iPS 18c H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4168 Pcnt=98 Library:Solexa-19791)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K27me3 donorID=Solexa-19791
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.4168 Hotspot_Percentile=98 GSM=GSM537674 dateUnrestricted=2011-01-28
track RM_H3K4me1_31
bigDataUrl RM_H3K4me1_31.bigWig
shortLabel RM H3K4me1 31
longLabel Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2865 Pcnt=23 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K4me1 donorID=31
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2865 Hotspot_Percentile=23 GSM=GSM621659 dateUnrestricted=2011-08-12
track MSCC_Input_hSKM1
bigDataUrl MSCC_Input_hSKM1.bigWig
shortLabel MS Input 1
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0256 Pcnt=38 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0256 Hotspot_Percentile=38 GSM=GSM621743 dateUnrestricted=2011-08-12
track H1_H3K4me3_0398
bigDataUrl H1_H3K4me3_0398.bigWig
shortLabel H1 H3K4me3 98
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3314 Pcnt=36 Library:Solexa-10398)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=Solexa-10398
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=12/23/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1541166 Hotspot_Score=0.3314 Hotspot_Percentile=36 GSM=GSM537680 dateUnrestricted=2011-01-28
track FL_H3K4me3_2727
bigDataUrl FL_H3K4me3_2727.bigWig
shortLabel FL H3K4me3 27
longLabel Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=3 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K4me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 Hotspot_Percentile=3 GSM=GSM621417 dateUnrestricted=2011-08-12
track ESI3_H3K27me3_5380
bigDataUrl ESI3_H3K27me3_5380.bigWig
shortLabel ESI3 H3K27me3 80
longLabel ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3761 Pcnt=92 Library:Solexa-10213/Solexa-15380)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K27me3 donorID=Solexa-10213/Solexa-15380
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3761 Hotspot_Percentile=92 GSM=GSM537648 dateUnrestricted=2011-02-03
track MSCC_H3K4me3_hSKM3
bigDataUrl MSCC_H3K4me3_hSKM3.bigWig
shortLabel MS H3K4me3 3
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4243 Pcnt=59 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4243 Hotspot_Percentile=59 GSM=GSM621760 dateUnrestricted=2011-08-12
track MSCC_H3K36me3_hSKM1
bigDataUrl MSCC_H3K36me3_hSKM1.bigWig
shortLabel MS H3K36me3 1
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1615 Pcnt=17 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K36me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1615 Hotspot_Percentile=17 GSM=GSM621739 dateUnrestricted=2011-08-12
track iPS20b_Input_0232
bigDataUrl iPS20b_Input_0232.bigWig
shortLabel iPS20b Input 32
longLabel iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.071 Pcnt=55 Library:Solexa-10232)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=Input donorID=Solexa-10232
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR sex=Male batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.071 Hotspot_Percentile=55 GSM=GSM537701 dateUnrestricted=2011-01-28
track FK_H3K27me3_2676
bigDataUrl FK_H3K27me3_2676.bigWig
shortLabel FK H3K27me3 76
longLabel Fetal Kidney H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0827 Pcnt=10 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K27me3 donorID=H-22676
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0827 Hotspot_Percentile=10 GSM=GSM621424 dateUnrestricted=2011-08-12
track CD34_H3K36me3_0_09
bigDataUrl CD34_H3K36me3_0_09.bigWig
shortLabel CD34 H3K36me3 20
longLabel CD34 Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3809 Pcnt=85 DonorID:culturedCD34_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=H3K36me3 donorID=culturedCD34_2/20/09
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3809 Hotspot_Percentile=85 GSM=GSM537655 dateUnrestricted=2011-01-28
track PI_H3K27me3_7_09
bigDataUrl PI_H3K27me3_7_09.bigWig
shortLabel PI H3K27me3 27
longLabel Pancreatic Islets H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2476 Pcnt=60 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K27me3 donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=CS200603 chip_antibody_lot=DAM1499359 Hotspot_Score=0.2476 Hotspot_Percentile=60 GSM=GSM537658 dateUnrestricted=2011-01-28
track RM_Input_31
bigDataUrl RM_Input_31.bigWig
shortLabel RM Input 31
longLabel Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0034 Pcnt=6 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=Input donorID=31
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0034 Hotspot_Percentile=6 GSM=GSM621677 dateUnrestricted=2011-08-12
track FL_H3K4me1_2727
bigDataUrl FL_H3K4me1_2727.bigWig
shortLabel FL H3K4me1 27
longLabel Fetal Lung H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2044 Pcnt=14 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K4me1 donorID=H-22727
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2044 Hotspot_Percentile=14 GSM=GSM621429 dateUnrestricted=2011-08-12
track MCD34_H3K4me1_1549
bigDataUrl MCD34_H3K4me1_1549.bigWig
shortLabel MCD34 H3K4me1 49
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4797 Pcnt=74 DonorID:RO01549)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me1 donorID=RO01549
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4797 Hotspot_Percentile=74 GSM=GSM621451 dateUnrestricted=2011-08-12
track AK_H3K4me3_7
bigDataUrl AK_H3K4me3_7.bigWig
shortLabel AK H3K4me3 27
longLabel Adult Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2112 Pcnt=8 DonorID:27)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AK assayType=H3K4me3 donorID=27
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2112 Hotspot_Percentile=8 GSM=GSM621648 dateUnrestricted=2011-08-12
track CD34_H3K9me3_1536
bigDataUrl CD34_H3K9me3_1536.bigWig
shortLabel MCD34 H3K9me3 36
longLabel Mobilized CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1396 Pcnt=41 DonorID:RO01536)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K9me3 donorID=RO01536
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1396 Hotspot_Percentile=41 GSM=GSM621663 dateUnrestricted=2011-08-12
track MSCC_H3K27me3_hSKM1
bigDataUrl MSCC_H3K27me3_hSKM1.bigWig
shortLabel MS H3K27me3 1
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1512 Pcnt=33 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1512 Hotspot_Percentile=33 GSM=GSM621740 dateUnrestricted=2011-08-12
track DM_H3K9ac_61
bigDataUrl DM_H3K9ac_61.bigWig
shortLabel DM H3K9ac 61
longLabel Duodenum Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1351 Pcnt=11 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K9ac donorID=61
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1351 Hotspot_Percentile=11 GSM=GSM621445 dateUnrestricted=2011-08-12
track RM_H3K36me3_31
bigDataUrl RM_H3K36me3_31.bigWig
shortLabel RM H3K36me3 31
longLabel Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1942 Pcnt=26 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K36me3 donorID=31
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1942 Hotspot_Percentile=26 GSM=GSM621687 dateUnrestricted=2011-08-12
track MSCC_H3K27me3_hSKM2
bigDataUrl MSCC_H3K27me3_hSKM2.bigWig
shortLabel MS H3K27me3 2
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.113 Pcnt=21 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.113 Hotspot_Percentile=21 GSM=GSM621751 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_8_09
bigDataUrl MCD34_H3K4me3_8_09.bigWig
shortLabel MCD34 H3K4me3 28
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6676 Pcnt=90 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01508
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.6676 Hotspot_Percentile=90 GSM=GSM537652 dateUnrestricted=2011-01-28
track CD3_H3K36me3_9661
bigDataUrl CD3_H3K36me3_9661.bigWig
shortLabel CD3 H3K36me3 61
longLabel CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2994 Pcnt=62 DonorID:CD3_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K36me3 donorID=CD3_39661
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2994 Hotspot_Percentile=62 GSM=GSM537612 dateUnrestricted=2011-02-03
track iPS11a_H3K4me3_1733
bigDataUrl iPS11a_H3K4me3_1733.bigWig
shortLabel iPS11a H3K4me3 33
longLabel iPS 11a H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3159 Pcnt=33 Library:Solexa-11733)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS11a assayType=H3K4me3 donorID=Solexa-11733
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-11a lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=19 medium=KSR sex=Male batch=1/26/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1541166 Hotspot_Score=0.3159 Hotspot_Percentile=33 GSM=GSM537694 dateUnrestricted=2011-01-28
track FH_Input_2727
bigDataUrl FH_Input_2727.bigWig
shortLabel FH Input 27
longLabel Fetal Heart Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0794 Pcnt=58 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FH assayType=Input donorID=H-22727
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0794 Hotspot_Percentile=58 GSM=GSM621396 dateUnrestricted=2011-08-12
track ESI3_H3K4me3_2681
bigDataUrl ESI3_H3K4me3_2681.bigWig
shortLabel ESI3 H3K4me3 81
longLabel ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4174 Pcnt=56 Library:Solexa-12681)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K4me3 donorID=Solexa-12681
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4174 Hotspot_Percentile=56 GSM=GSM537626 dateUnrestricted=2011-01-28
track SM_H3K27me3_19
bigDataUrl SM_H3K27me3_19.bigWig
shortLabel SM H3K27me3 19
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1542 Pcnt=35 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K27me3 donorID=19
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1542 Hotspot_Percentile=35 GSM=GSM621653 dateUnrestricted=2011-08-12
track Treg_H3K4me3_20
bigDataUrl Treg_H3K4me3_20.bigWig
shortLabel Treg H3K4me3 20
longLabel Treg Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4929 Pcnt=69 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Treg assayType=H3K4me3 donorID=20
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4929 Hotspot_Percentile=69 GSM=GSM621388 dateUnrestricted=2011-08-12
track SM_H3K4me1_19
bigDataUrl SM_H3K4me1_19.bigWig
shortLabel SM H3K4me1 19
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4091 Pcnt=65 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me1 donorID=19
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4091 Hotspot_Percentile=65 GSM=GSM621640 dateUnrestricted=2011-08-12
track SM_H3K9me3_19
bigDataUrl SM_H3K9me3_19.bigWig
shortLabel SM H3K9me3 19
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1044 Pcnt=36 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9me3 donorID=19
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1044 Hotspot_Percentile=36 GSM=GSM621632 dateUnrestricted=2011-08-12
track MCD4_Input_37
bigDataUrl MCD4_Input_37.bigWig
shortLabel MCD4 Input 37
longLabel Mobilized_CD4_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0049 Pcnt=14 DonorID:37)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD4 assayType=Input donorID=37
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD4+ passage_if_expanded=NA cell_type="Adult peripheral CD4" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=37 biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0049 Hotspot_Percentile=14 GSM=GSM621413 dateUnrestricted=2011-08-12
track CM_H3K9ac_32
bigDataUrl CM_H3K9ac_32.bigWig
shortLabel CM H3K9ac 32
longLabel Colonic Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2838 Pcnt=63 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K9ac donorID=32
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2838 Hotspot_Percentile=63 GSM=GSM621674 dateUnrestricted=2011-08-12
track AL_H3K4me1_3
bigDataUrl AL_H3K4me1_3.bigWig
shortLabel AL H3K4me1 3.0
longLabel Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4319 Pcnt=72 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K4me1 donorID=3.0
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.4319 Hotspot_Percentile=72 GSM=GSM537706 dateUnrestricted=2011-01-28
track DM_Input_61
bigDataUrl DM_Input_61.bigWig
shortLabel DM Input 61
longLabel Duodenum Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=Input donorID=61
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0033 Hotspot_Percentile=5 GSM=GSM621406 dateUnrestricted=2011-08-12
track MCD34_Input_1480
bigDataUrl MCD34_Input_1480.bigWig
shortLabel MCD34 Input 80
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0022 Pcnt=2 DonorID:RO01480)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01480
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0022 Hotspot_Percentile=2 GSM=GSM621456 dateUnrestricted=2011-08-12
track iPS18b_Input__WCE
bigDataUrl iPS18b_Input__WCE.bigWig
shortLabel iPS18b Input CE
longLabel iPS 18b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1046 Pcnt=76 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18b assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-18b differentiation_method=NA batch=hiPS-18b-1 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1046 Hotspot_Percentile=76 GSM=GSM621411 dateUnrestricted=2011-08-12
track SM_H3K27me3_62
bigDataUrl SM_H3K27me3_62.bigWig
shortLabel SM H3K27me3 62
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0918 Pcnt=12 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K27me3 donorID=62
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0918 Hotspot_Percentile=12 GSM=GSM621683 dateUnrestricted=2011-08-12
track AL_H3K36me3_5
bigDataUrl AL_H3K36me3_5.bigWig
shortLabel AL H3K36me3 5.0
longLabel Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2738 Pcnt=53 DonorID:5.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K36me3 donorID=5.0
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.2738 Hotspot_Percentile=53 GSM=GSM537708 dateUnrestricted=2011-01-28
track MSCC_H3K9ac_hSKM1
bigDataUrl MSCC_H3K9ac_hSKM1.bigWig
shortLabel MS H3K9ac 1
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5427 Pcnt=94 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9ac donorID=NA
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5427 Hotspot_Percentile=94 GSM=GSM621738 dateUnrestricted=2011-08-12
track Th17_Input_20
bigDataUrl Th17_Input_20.bigWig
shortLabel Th17 Input 20
longLabel Th17 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0863 Pcnt=70 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Th17 assayType=Input donorID=20
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=Th17 donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0863 Hotspot_Percentile=70 GSM=GSM621455 dateUnrestricted=2011-08-12
track CD3_H3K27me3_9661
bigDataUrl CD3_H3K27me3_9661.bigWig
shortLabel CD3 H3K27me3 61
longLabel CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3042 Pcnt=81 DonorID:CD3_39661)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K27me3 donorID=CD3_39661
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1387952 Hotspot_Score=0.3042 Hotspot_Percentile=81 GSM=GSM537613 dateUnrestricted=2011-02-03
track SSM_H3K4me1_28
bigDataUrl SSM_H3K4me1_28.bigWig
shortLabel SSM H3K4me1 28
longLabel Stomach Smooth Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.354 Pcnt=40 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=H3K4me1 donorID=28
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.354 Hotspot_Percentile=40 GSM=GSM621642 dateUnrestricted=2011-08-12
track CD34_H3K27me3_1536
bigDataUrl CD34_H3K27me3_1536.bigWig
shortLabel MCD34 H3K27me3 36
longLabel Mobilized CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1353 Pcnt=29 DonorID:RO01536)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01536
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.1353 Hotspot_Percentile=29 GSM=GSM621664 dateUnrestricted=2011-08-12
track CD19_H3K9me3_0_09
bigDataUrl CD19_H3K9me3_0_09.bigWig
shortLabel CD19 H3K9me3 20
longLabel CD19 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2524 Pcnt=81 DonorID:CD19_2/20/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K9me3 donorID=CD19_2/20/09
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_2/20/09 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2524 Hotspot_Percentile=81 GSM=GSM537654 dateUnrestricted=2011-01-28
track ESI3_H3K27me3_2678
bigDataUrl ESI3_H3K27me3_2678.bigWig
shortLabel ESI3 H3K27me3 78
longLabel ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2653 Pcnt=63 Library:Solexa-12678)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K27me3 donorID=Solexa-12678
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2653 Hotspot_Percentile=63 GSM=GSM537627 dateUnrestricted=2011-01-28
track MSCC_H3K36me3_hSKM3
bigDataUrl MSCC_H3K36me3_hSKM3.bigWig
shortLabel MS H3K36me3 3
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1494 Pcnt=9 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K36me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1494 Hotspot_Percentile=9 GSM=GSM621754 dateUnrestricted=2011-08-12
track MCD34_Input_8_09
bigDataUrl MCD34_Input_8_09.bigWig
shortLabel MCD34 Input 28
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.082 Pcnt=64 DonorID:RO01508)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=Input donorID=RO01508
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.082 Hotspot_Percentile=64 GSM=GSM537662 dateUnrestricted=2011-01-28
track SM_H3K9me3_63
bigDataUrl SM_H3K9me3_63.bigWig
shortLabel SM H3K9me3 63
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0518 Pcnt=12 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9me3 donorID=63
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0518 Hotspot_Percentile=12 GSM=GSM621690 dateUnrestricted=2011-08-12
track MCD34_H3K27me3_1549
bigDataUrl MCD34_H3K27me3_1549.bigWig
shortLabel MCD34 H3K27me3 49
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2998 Pcnt=77 DonorID:RO01549)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K27me3 donorID=RO01549
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2998 Hotspot_Percentile=77 GSM=GSM621431 dateUnrestricted=2011-08-12
track CD34_Input_123
bigDataUrl CD34_Input_123.bigWig
shortLabel CD34 Input 23
longLabel CD34 Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0062 Pcnt=20 DonorID:123)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34C assayType=Input donorID=123
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0062 Hotspot_Percentile=20 GSM=GSM621452 dateUnrestricted=2011-08-12
track ESWA7_H3K27me3_2609
bigDataUrl ESWA7_H3K27me3_2609.bigWig
shortLabel ESWA7 H3K27me3 09
longLabel ES-WA7 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2923 Pcnt=75 Library:Solexa-12609)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESWA7 assayType=H3K27me3 donorID=Solexa-12609
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2923 Hotspot_Percentile=75 GSM=GSM537657 dateUnrestricted=2011-01-28
track iPS15b_H3K27me3_7Me3
bigDataUrl iPS15b_H3K27me3_7Me3.bigWig
shortLabel iPS15b H3K27me3 e3
longLabel iPS 15b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2758 Pcnt=67 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-15b differentiation_method=NA batch=hiPS-15b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2758 Hotspot_Percentile=67 GSM=GSM621433 dateUnrestricted=2011-08-12
track ADMSC_H3K36me3_1
bigDataUrl ADMSC_H3K36me3_1.bigWig
shortLabel ADMSC H3K36me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2387 Pcnt=42 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K36me3 donorID=1
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2387 Hotspot_Percentile=42 GSM=GSM621446 dateUnrestricted=2011-08-12
track iPS20b_H3K9ac_0764
bigDataUrl iPS20b_H3K9ac_0764.bigWig
shortLabel iPS20b H3K9ac 64
longLabel iPS 20b H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1303 Pcnt=6 Library:Solexa-20764)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K9ac donorID=Solexa-20764
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1303 Hotspot_Percentile=6 GSM=GSM537689 dateUnrestricted=2011-01-28
track H1_Input_2532
bigDataUrl H1_Input_2532.bigWig
shortLabel H1 Input 32
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0809 Pcnt=61 Library:Solexa-12532)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=Solexa-12532
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0809 Hotspot_Percentile=61 GSM=GSM537682 dateUnrestricted=2011-01-28
track AK_H3K36me3_7
bigDataUrl AK_H3K36me3_7.bigWig
shortLabel AK H3K36me3 27
longLabel Adult Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1515 Pcnt=11 DonorID:27)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AK assayType=H3K36me3 donorID=27
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1515 Hotspot_Percentile=11 GSM=GSM621634 dateUnrestricted=2011-08-12
track CD34_H3K9me3_9811
bigDataUrl CD34_H3K9me3_9811.bigWig
shortLabel CD34 H3K9me3 11
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2121 Pcnt=71 DonorID:CD34_39811)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K9me3 donorID=CD34_39811
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2121 Hotspot_Percentile=71 GSM=GSM486712 dateUnrestricted=2010-10-06
track FK_H3K4me1_2676
bigDataUrl FK_H3K4me1_2676.bigWig
shortLabel FK H3K4me1 76
longLabel Fetal Kidney H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1268 Pcnt=5 DonorID:H-22676)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FK assayType=H3K4me1 donorID=H-22676
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1268 Hotspot_Percentile=5 GSM=GSM621409 dateUnrestricted=2011-08-12
track RM_H3K36me3_29
bigDataUrl RM_H3K36me3_29.bigWig
shortLabel RM H3K36me3 29
longLabel Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2316 Pcnt=36 DonorID:29)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K36me3 donorID=29
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2316 Hotspot_Percentile=36 GSM=GSM621646 dateUnrestricted=2011-08-12
track RSM_H3K4me3_30
bigDataUrl RSM_H3K4me3_30.bigWig
shortLabel RSM H3K4me3 30
longLabel Rectal Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3023 Pcnt=31 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=H3K4me3 donorID=30
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3023 Hotspot_Percentile=31 GSM=GSM621662 dateUnrestricted=2011-08-12
track CM_H3K4me1_32
bigDataUrl CM_H3K4me1_32.bigWig
shortLabel CM H3K4me1 32
longLabel Colonic Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.31 Pcnt=30 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K4me1 donorID=32
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.31 Hotspot_Percentile=30 GSM=GSM621670 dateUnrestricted=2011-08-12
track FH_H3K9me3_2727
bigDataUrl FH_H3K9me3_2727.bigWig
shortLabel FH H3K9me3 27
longLabel Fetal Heart H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0676 Pcnt=22 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FH assayType=H3K9me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0676 Hotspot_Percentile=22 GSM=GSM621434 dateUnrestricted=2011-08-12
track CD3_H3K4me1_9811
bigDataUrl CD3_H3K4me1_9811.bigWig
shortLabel CD3 H3K4me1 11
longLabel CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3765 Pcnt=49 DonorID:CD3_39811)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K4me1 donorID=CD3_39811
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.3765 Hotspot_Percentile=49 GSM=GSM537636 dateUnrestricted=2011-01-28
track SM_H3K27me3_63
bigDataUrl SM_H3K27me3_63.bigWig
shortLabel SM H3K27me3 63
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1189 Pcnt=23 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K27me3 donorID=63
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1189 Hotspot_Percentile=23 GSM=GSM621692 dateUnrestricted=2011-08-12
track CD3_H3K4me3_9804
bigDataUrl CD3_H3K4me3_9804.bigWig
shortLabel CD3 H3K4me3 04
longLabel CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3808 Pcnt=49 DonorID:CD3_39804)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K4me3 donorID=CD3_39804
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3808 Hotspot_Percentile=49 GSM=GSM537633 dateUnrestricted=2011-01-28
track iPS20b_H3K36me3_0763
bigDataUrl iPS20b_H3K36me3_0763.bigWig
shortLabel iPS20b H3K36me3 63
longLabel iPS 20b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2405 Pcnt=43 Library:Solexa-20763)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K36me3 donorID=Solexa-20763
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.2405 Hotspot_Percentile=43 GSM=GSM537704 dateUnrestricted=2011-01-28
track FL_H3K36me3_2727
bigDataUrl FL_H3K36me3_2727.bigWig
shortLabel FL H3K36me3 27
longLabel Fetal Lung H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1924 Pcnt=25 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K36me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1924 Hotspot_Percentile=25 GSM=GSM621387 dateUnrestricted=2011-08-12
track AK_Input_7
bigDataUrl AK_Input_7.bigWig
shortLabel AK Input 27
longLabel Adult Kidney Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:27)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AK assayType=Input donorID=27
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 Hotspot_Percentile=17 GSM=GSM621638 dateUnrestricted=2011-08-12
track CD34_H3K4me3_9804
bigDataUrl CD34_H3K4me3_9804.bigWig
shortLabel CD34 H3K4me3 04
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3749 Pcnt=46 DonorID:CD34_39804)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K4me3 donorID=CD34_39804
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3749 Hotspot_Percentile=46 GSM=GSM486711 dateUnrestricted=2011-01-28
track ESI3_H3K9ac_5383
bigDataUrl ESI3_H3K9ac_5383.bigWig
shortLabel ESI3 H3K9ac 83
longLabel ES-I3 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6464 Pcnt=100 Library:Solexa-15383)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K9ac donorID=Solexa-15383
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.6464 Hotspot_Percentile=100 GSM=GSM537670 dateUnrestricted=2011-01-28
track BMDMSC_H3K9me3_57
bigDataUrl BMDMSC_H3K9me3_57.bigWig
shortLabel BMDMSC H3K9me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0841 Pcnt=27 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K9me3 donorID=57
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0841 Hotspot_Percentile=27 GSM=GSM621426 dateUnrestricted=2011-08-12
track CD3_H3K9me3_9811
bigDataUrl CD3_H3K9me3_9811.bigWig
shortLabel CD3 H3K9me3 11
longLabel CD3 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1669 Pcnt=51 DonorID:CD3_39811)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K9me3 donorID=CD3_39811
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1669 Hotspot_Percentile=51 GSM=GSM537637 dateUnrestricted=2011-01-28
track MSCC_H3K9me3_hSKM3
bigDataUrl MSCC_H3K9me3_hSKM3.bigWig
shortLabel MS H3K9me3 3
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0852 Pcnt=29 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9me3 donorID=NA
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0852 Hotspot_Percentile=29 GSM=GSM621753 dateUnrestricted=2011-08-12
track CD19_H3K27me3_6_08
bigDataUrl CD19_H3K27me3_6_08.bigWig
shortLabel CD19 H3K27me3 26
longLabel CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2152 Pcnt=48 DonorID:CD19_6/26/08)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD19 assayType=H3K27me3 donorID=CD19_6/26/08
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_6/26/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27me3 chip_antibody_provider=none chip_antibody_catalog=none chip_antibody_lot=none Hotspot_Score=0.2152 Hotspot_Percentile=48 GSM=GSM537638 dateUnrestricted=2011-01-28
track RSM_Input_30
bigDataUrl RSM_Input_30.bigWig
shortLabel RSM Input 30
longLabel Rectal Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0061 Pcnt=18 DonorID:30)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RSM assayType=Input donorID=30
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0061 Hotspot_Percentile=18 GSM=GSM621657 dateUnrestricted=2011-08-12
track SSM_H3K9me3_28
bigDataUrl SSM_H3K9me3_28.bigWig
shortLabel SSM H3K9me3 28
longLabel Stomach Smooth Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0863 Pcnt=31 DonorID:28)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SSM assayType=H3K9me3 donorID=28
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0863 Hotspot_Percentile=31 GSM=GSM621631 dateUnrestricted=2011-08-12
track CD34_H3K4me1_9811
bigDataUrl CD34_H3K4me1_9811.bigWig
shortLabel CD34 H3K4me1 11
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3781 Pcnt=53 DonorID:CD34_39811)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD34 assayType=H3K4me1 donorID=CD34_39811
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.3781 Hotspot_Percentile=53 GSM=GSM486708 dateUnrestricted=2011-01-28
track MSCC_H3K4me3_hSKM2
bigDataUrl MSCC_H3K4me3_hSKM2.bigWig
shortLabel MS H3K4me3 2
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4229 Pcnt=57 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4229 Hotspot_Percentile=57 GSM=GSM621745 dateUnrestricted=2011-08-12
track AL_H3K4me3_3
bigDataUrl AL_H3K4me3_3.bigWig
shortLabel AL H3K4me3 3.0
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2193 Pcnt=11 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K4me3 donorID=3.0
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.2193 Hotspot_Percentile=11 GSM=GSM537697 dateUnrestricted=2011-01-28
track MCD34_H3K9me3_1549
bigDataUrl MCD34_H3K9me3_1549.bigWig
shortLabel MCD34 H3K9me3 49
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3224 Pcnt=92 DonorID:RO01549)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K9me3 donorID=RO01549
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3224 Hotspot_Percentile=92 GSM=GSM621436 dateUnrestricted=2011-08-12
track iPS15b_H3K36me3_0749
bigDataUrl iPS15b_H3K36me3_0749.bigWig
shortLabel iPS15b H3K36me3 49
longLabel iPS 15b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2221 Pcnt=32 Library:Solexa-20749)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=H3K36me3 donorID=Solexa-20749
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.2221 Hotspot_Percentile=32 GSM=GSM537690 dateUnrestricted=2011-01-28
track DM_H3K4me3_61
bigDataUrl DM_H3K4me3_61.bigWig
shortLabel DM H3K4me3 61
longLabel Duodenum Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3018 Pcnt=30 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K4me3 donorID=61
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3018 Hotspot_Percentile=30 GSM=GSM621432 dateUnrestricted=2011-08-12
track SM_H3K9ac_62
bigDataUrl SM_H3K9ac_62.bigWig
shortLabel SM H3K9ac 62
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4828 Pcnt=80 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9ac donorID=62
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4828 Hotspot_Percentile=80 GSM=GSM621682 dateUnrestricted=2011-08-12
track ESI3_H3K36me3_5381
bigDataUrl ESI3_H3K36me3_5381.bigWig
shortLabel ESI3 H3K36me3 81
longLabel ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2282 Pcnt=34 Library:Solexa-15381)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESI3 assayType=H3K36me3 donorID=Solexa-15381
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2282 Hotspot_Percentile=34 GSM=GSM537669 dateUnrestricted=2011-01-28
track CD34_H3K4me3_1536
bigDataUrl CD34_H3K4me3_1536.bigWig
shortLabel MCD34 H3K4me3 36
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2531 Pcnt=18 DonorID:RO01536)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MCD34 assayType=H3K4me3 donorID=RO01536
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2531 Hotspot_Percentile=18 GSM=GSM621665 dateUnrestricted=2011-08-12
track CD3_H3K27me3_9804
bigDataUrl CD3_H3K27me3_9804.bigWig
shortLabel CD3 H3K27me3 04
longLabel CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2211 Pcnt=50 DonorID:CD3_39804)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD3 assayType=H3K27me3 donorID=CD3_39804
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2211 Hotspot_Percentile=50 GSM=GSM537631 dateUnrestricted=2011-01-28
track CM_H3K4me3_32
bigDataUrl CM_H3K4me3_32.bigWig
shortLabel CM H3K4me3 32
longLabel Colonic Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4897 Pcnt=67 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K4me3 donorID=32
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4897 Hotspot_Percentile=67 GSM=GSM621671 dateUnrestricted=2011-08-12
track H1_H3K36me3_4961
bigDataUrl H1_H3K36me3_4961.bigWig
shortLabel H1 H3K36me3 61
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-14961)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=Solexa-14961
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537684 dateUnrestricted=2011-01-28
track Treg_H3K36me3_20
bigDataUrl Treg_H3K36me3_20.bigWig
shortLabel Treg H3K36me3 20
longLabel Treg Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4144 Pcnt=89 DonorID:20)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=Treg assayType=H3K36me3 donorID=20
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4144 Hotspot_Percentile=89 GSM=GSM621449 dateUnrestricted=2011-08-12
track FB_H3K9me3_2510
bigDataUrl FB_H3K9me3_2510.bigWig
shortLabel FB H3K9me3 10
longLabel Fetal Brain H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0596 Pcnt=19 DonorID:H-22510)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FB assayType=H3K9me3 donorID=H-22510
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0596 Hotspot_Percentile=19 GSM=GSM621427 dateUnrestricted=2011-08-12
track H1_H3K4me3_2522
bigDataUrl H1_H3K4me3_2522.bigWig
shortLabel H1 H3K4me3 22
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2734 Pcnt=23 Library:Solexa-12522)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=Solexa-12522
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2734 Hotspot_Percentile=23 GSM=GSM537681 dateUnrestricted=2011-01-28
track SM_H3K4me3_62
bigDataUrl SM_H3K4me3_62.bigWig
shortLabel SM H3K4me3 62
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3359 Pcnt=38 DonorID:62)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K4me3 donorID=62
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3359 Hotspot_Percentile=38 GSM=GSM621685 dateUnrestricted=2011-08-12
track RM_H3K4me3_31
bigDataUrl RM_H3K4me3_31.bigWig
shortLabel RM H3K4me3 31
longLabel Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3226 Pcnt=34 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K4me3 donorID=31
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3226 Hotspot_Percentile=34 GSM=GSM621658 dateUnrestricted=2011-08-12
track SM_H3K9ac_19
bigDataUrl SM_H3K9ac_19.bigWig
shortLabel SM H3K9ac 19
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4472 Pcnt=77 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K9ac donorID=19
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4472 Hotspot_Percentile=77 GSM=GSM621688 dateUnrestricted=2011-08-12
track iPS20b_H3K4me3_4Me3
bigDataUrl iPS20b_H3K4me3_4Me3.bigWig
shortLabel iPS20b H3K4me3 e3
longLabel iPS 20b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2085 Pcnt=7 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS20b assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2085 Hotspot_Percentile=7 GSM=GSM621423 dateUnrestricted=2011-08-12
track iPS18c_H3K9me3_9774
bigDataUrl iPS18c_H3K9me3_9774.bigWig
shortLabel iPS18c H3K9me3 74
longLabel iPS 18c H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2451 Pcnt=78 Library:Solexa-19774)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS18c assayType=H3K9me3 donorID=Solexa-19774
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2451 Hotspot_Percentile=78 GSM=GSM537678 dateUnrestricted=2011-01-28
track FL_H3K9me3_2727
bigDataUrl FL_H3K9me3_2727.bigWig
shortLabel FL H3K9me3 27
longLabel Fetal Lung H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0411 Pcnt=7 DonorID:H-22727)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=FL assayType=H3K9me3 donorID=H-22727
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0411 Hotspot_Percentile=7 GSM=GSM621397 dateUnrestricted=2011-08-12
track ESWA7_H3K4me3_3062
bigDataUrl ESWA7_H3K4me3_3062.bigWig
shortLabel ESWA7 H3K4me3 62
longLabel ES-WA7 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4014 Pcnt=54 Library:Solexa-13062)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESWA7 assayType=H3K4me3 donorID=Solexa-13062
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4014 Hotspot_Percentile=54 GSM=GSM537623 dateUnrestricted=2011-01-28
track PI_H3K4me3_7_09
bigDataUrl PI_H3K4me3_7_09.bigWig
shortLabel PI H3K4me3 27
longLabel Pancreatic Islets H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5002 Pcnt=70 DonorID:pancreaticisletsnormal_3/27/09)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K4me3 donorID=pancreaticisletsnormal_3/27/09
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=374056 Hotspot_Score=0.5002 Hotspot_Percentile=70 GSM=GSM537643 dateUnrestricted=2011-01-28
track AL_H3K36me3_3
bigDataUrl AL_H3K36me3_3.bigWig
shortLabel AL H3K36me3 3.0
longLabel Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2812 Pcnt=57 DonorID:3.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=AL assayType=H3K36me3 donorID=3.0
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.2812 Hotspot_Percentile=57 GSM=GSM537699 dateUnrestricted=2011-01-28
track RM_H3K27me3_31
bigDataUrl RM_H3K27me3_31.bigWig
shortLabel RM H3K27me3 31
longLabel Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0572 Pcnt=2 DonorID:31)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=RM assayType=H3K27me3 donorID=31
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0572 Hotspot_Percentile=2 GSM=GSM621676 dateUnrestricted=2011-08-12
track ADMSC_Input_1
bigDataUrl ADMSC_Input_1.bigWig
shortLabel ADMSC Input 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0093 Pcnt=29 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=Input donorID=1
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0093 Hotspot_Percentile=29 GSM=GSM621443 dateUnrestricted=2011-08-12
track CD15_H3K27me3_23
bigDataUrl CD15_H3K27me3_23.bigWig
shortLabel CD15 H3K27me3 23.0
longLabel CD15 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3763 Pcnt=94 DonorID:23.0)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CD15 assayType=H3K27me3 donorID=23.0
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD15 Primary Cells" markers=CD15+ donor_id=23.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.3763 Hotspot_Percentile=94 GSM=GSM537703 dateUnrestricted=2011-01-28
track H1_H3K4me3_8038
bigDataUrl H1_H3K4me3_8038.bigWig
shortLabel H1 H3K4me3 38
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4388 Pcnt=61 Library:Solexa-8038)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=Solexa-8038
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=331024 Hotspot_Score=0.4388 Hotspot_Percentile=61 GSM=GSM433170 dateUnrestricted=2010-05-05
track H1_H3K9ac_2526
bigDataUrl H1_H3K9ac_2526.bigWig
shortLabel H1 H3K9ac 26
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2242 Pcnt=40 Library:Solexa-12526)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9ac donorID=Solexa-12526
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.2242 Hotspot_Percentile=40 GSM=GSM433171 dateUnrestricted=2010-05-05
track iPS15b_H3K9ac_0747
bigDataUrl iPS15b_H3K9ac_0747.bigWig
shortLabel iPS15b H3K9ac 47
longLabel iPS 15b H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1426 Pcnt=14 Library:Solexa-20747)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=iPS15b assayType=H3K9ac donorID=Solexa-20747
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1426 Hotspot_Percentile=14 GSM=GSM537692 dateUnrestricted=2011-01-28
track BMDMSC_H3K36me3_57
bigDataUrl BMDMSC_H3K36me3_57.bigWig
shortLabel BMDMSC H3K36me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3677 Pcnt=81 DonorID:57)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=BMDMSC assayType=H3K36me3 donorID=57
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3677 Hotspot_Percentile=81 GSM=GSM621419 dateUnrestricted=2011-08-12
track ADMSC_H3K4me3_1
bigDataUrl ADMSC_H3K4me3_1.bigWig
shortLabel ADMSC H3K4me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5364 Pcnt=75 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K4me3 donorID=1
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5364 Hotspot_Percentile=75 GSM=GSM621458 dateUnrestricted=2011-08-12
track SM_H3K36me3_63
bigDataUrl SM_H3K36me3_63.bigWig
shortLabel SM H3K36me3 63
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1734 Pcnt=21 DonorID:63)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=H3K36me3 donorID=63
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1734 Hotspot_Percentile=21 GSM=GSM621693 dateUnrestricted=2011-08-12
track CM_H3K9me3_32
bigDataUrl CM_H3K9me3_32.bigWig
shortLabel CM H3K9me3 32
longLabel Colonic Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1436 Pcnt=42 DonorID:32)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=CM assayType=H3K9me3 donorID=32
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1436 Hotspot_Percentile=42 GSM=GSM621668 dateUnrestricted=2011-08-12
track SM_Input_19
bigDataUrl SM_Input_19.bigWig
shortLabel SM Input 19
longLabel Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=12 DonorID:19)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=SM assayType=Input donorID=19
type bigWig 0 30
noInherit on
color 0,0,133
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0047 Hotspot_Percentile=12 GSM=GSM621641 dateUnrestricted=2011-08-12
track ESWA7_H3K9me3_2613
bigDataUrl ESWA7_H3K9me3_2613.bigWig
shortLabel ESWA7 H3K9me3 13
longLabel ES-WA7 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1543 Pcnt=47 Library:Solexa-12613)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ESWA7 assayType=H3K9me3 donorID=Solexa-12613
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1543 Hotspot_Percentile=47 GSM=GSM537639 dateUnrestricted=2011-01-28
track ADMSC_H3K9me3_1
bigDataUrl ADMSC_H3K9me3_1.bigWig
shortLabel ADMSC H3K9me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0606 Pcnt=20 DonorID:1)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=ADMSC assayType=H3K9me3 donorID=1
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0606 Hotspot_Percentile=20 GSM=GSM621398 dateUnrestricted=2011-08-12
track MSCC_H3K9ac_hSKM2
bigDataUrl MSCC_H3K9ac_hSKM2.bigWig
shortLabel MS H3K9ac 2
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4984 Pcnt=83 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K9ac donorID=NA
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4984 Hotspot_Percentile=83 GSM=GSM621748 dateUnrestricted=2011-08-12
track DM_H3K36me3_61
bigDataUrl DM_H3K36me3_61.bigWig
shortLabel DM H3K36me3 61
longLabel Duodenum Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2461 Pcnt=47 DonorID:61)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=DM assayType=H3K36me3 donorID=61
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2461 Hotspot_Percentile=47 GSM=GSM621421 dateUnrestricted=2011-08-12
track MSCC_H3K4me3_hSKM1
bigDataUrl MSCC_H3K4me3_hSKM1.bigWig
shortLabel MS H3K4me3 1
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5469 Pcnt=79 DonorID:NA)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=MS assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5469 Hotspot_Percentile=79 GSM=GSM621737 dateUnrestricted=2011-08-12
track PI_H3K9me3_0_00
bigDataUrl PI_H3K9me3_0_00.bigWig
shortLabel PI H3K9me3 0
longLabel Pancreatic Islets H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1883 Pcnt=61 DonorID:pancreaticisletsnormal_0/0/00)
subTrack EdaccRelease2BIHistoneModificationViewCOV
subGroups view=COV sampleType=PI assayType=H3K9me3 donorID=pancreaticisletsnormal_0/0/00
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_0/0/00" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=566416 Hotspot_Score=0.1883 Hotspot_Percentile=61 GSM=GSM537686 dateUnrestricted=2011-01-28
track EdaccRelease2DNase
compositeTrack on
shortLabel DNase
longLabel DNase Hypersensitivity Raw Signal from REMC/UW
group edacc2
subGroup1 view Views ALN=Alignments COV=Coverage CG=CpG_Score
subGroup2 sampleType Sample_Type FAG=Fetal_Adrenal_Gland FB=Fetal_Brain FH=Fetal_Heart FK=Fetal_Kidney FL=Fetal_Lung IMR90=IMR90 MCD34=Mobilized_CD34
subGroup3 assayType Assay_Type DNase=Chromatin_Accessibility
subGroup4 donorID Donor/Library DS13219=DS13219 DS13229=DS13229 H-22337=H-22337 H-22510=H-22510 H-22662=H-22662 H-22676=H-22676 H-22727=H-22727 H-22911=H-22911 H-22934B=H-22934B H-23090=H-23090 H-23247=H-23247 H-23266=H-23266 H-23284=H-23284 H-23365=H-23365 NA=NA RO00738=RO00738 RO01480=RO01480 RO01492=RO01492 RO01508=RO01508 RO01517=RO01517 RO01520=RO01520 RO01527=RO01527 RO01535=RO01535 RO01536=RO01536 RO01549=RO01549 RO01562=RO01562 DS11759=DS11759 DS11764=DS11764
dimensions dimensionX=assayType dimensionY=sampleType
sortOrder assayType=+ sampleType=+ donorID=+
dividers assayType
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 9
visibility hide
type bed 3
track EdaccRelease2DNaseViewCOV
shortLabel Coverage
view COV
maxHeightPixels 64:32:16
subTrack EdaccRelease2DNase
track FAG_DNase_62
bigDataUrl FAG_DNase_62.bigWig
shortLabel FAG DNase 62 28
longLabel Fetal Adrenal Gland DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4016 Pcnt=42 DonorID:H-22662)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FAG assayType=DNase donorID=H-22662
type bigWig 1 80
noInherit on
color 0,150,0
# itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal adrenal" tissue_depot=UW collection_method=fetal donor_id=H-22662 donor_age="96 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4016 Hotspot_Percentile=42 GSM=GSM530653 dateUnrestricted=2011-01-28
track FB_DNase_10_72
bigDataUrl FB_DNase_10_72.bigWig
shortLabel FB DNase 10 72
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6461 Pcnt=97 DonorID:H-22510)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-22510
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22510 donor_age="122 days" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6461 Hotspot_Percentile=97 GSM=GSM530651 dateUnrestricted=2011-01-28
track FB_DNase_10_77
bigDataUrl FB_DNase_10_77.bigWig
shortLabel FB DNase 10 77
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.559 Pcnt=85 DonorID:H-22510)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-22510
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22510 donor_age="122 days" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.559 Hotspot_Percentile=85 GSM=GSM595913 dateUnrestricted=2011-06-21
track FB_DNase_11
bigDataUrl FB_DNase_11.bigWig
shortLabel FB DNase 11 64
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5464 Pcnt=80 DonorID:H-22911)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-22911
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22911 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5464 Hotspot_Percentile=80 GSM=GSM595920 dateUnrestricted=2011-06-21
track FB_DNase_66_17
bigDataUrl FB_DNase_66_17.bigWig
shortLabel FB DNase 66 17
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3922 Pcnt=32 DonorID:H-23266)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-23266
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3922 Hotspot_Percentile=32 GSM=GSM595922 dateUnrestricted=2011-06-21
track FB_DNase_66_18
bigDataUrl FB_DNase_66_18.bigWig
shortLabel FB DNase 66 18
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4083 Pcnt=45 DonorID:H-23266)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-23266
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4083 Hotspot_Percentile=45 GSM=GSM595923 dateUnrestricted=2011-06-21
track FB_DNase_84_03
bigDataUrl FB_DNase_84_03.bigWig
shortLabel FB DNase 84 03
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5007 Pcnt=65 DonorID:H-23284)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-23284
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5007 Hotspot_Percentile=65 GSM=GSM595926 dateUnrestricted=2011-06-21
track FB_DNase_84_15
bigDataUrl FB_DNase_84_15.bigWig
shortLabel FB DNase 84 15
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5392 Pcnt=75 DonorID:H-23284)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FB assayType=DNase donorID=H-23284
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5392 Hotspot_Percentile=75 GSM=GSM595928 dateUnrestricted=2011-06-21
track FH_DNase_62
bigDataUrl FH_DNase_62.bigWig
shortLabel FH DNase 62 31
longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5319 Pcnt=72 DonorID:H-22662)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FH assayType=DNase donorID=H-22662
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal heart" tissue_depot=UW collection_method=fetal donor_id=H-22662 donor_age="96 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5319 Hotspot_Percentile=72 GSM=GSM530654 dateUnrestricted=2011-01-28
track FH_DNase_27
bigDataUrl FH_DNase_27.bigWig
shortLabel FH DNase 27 10
longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3944 Pcnt=37 DonorID:H-22727)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FH assayType=DNase donorID=H-22727
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal heart" tissue_depot=UW collection_method=fetal donor_id=H-22727 donor_age="101 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3944 Hotspot_Percentile=37 GSM=GSM530661 dateUnrestricted=2011-01-28
track FK_DNase_37
bigDataUrl FK_DNase_37.bigWig
shortLabel FK DNase 37 86
longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.397 Pcnt=40 DonorID:H-22337)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FK assayType=DNase donorID=H-22337
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal kidney" tissue_depot=UW collection_method=fetal donor_id=H-22337 donor_age="82 days" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.397 Hotspot_Percentile=40 GSM=GSM493385 dateUnrestricted=2010-12-22
track FK_DNase_76
bigDataUrl FK_DNase_76.bigWig
shortLabel FK DNase 76 35
longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4301 Pcnt=52 DonorID:H-22676)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FK assayType=DNase donorID=H-22676
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal kidney" tissue_depot=UW collection_method=fetal donor_id=H-22676 donor_age="122 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4301 Hotspot_Percentile=52 GSM=GSM530655 dateUnrestricted=2011-01-28
track FL_DNase_76
bigDataUrl FL_DNase_76.bigWig
shortLabel FL DNase 76 46
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4301 Pcnt=52 DonorID:H-22676)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-22676
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22676 donor_age="122 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4301 Hotspot_Percentile=52 GSM=GSM530656 dateUnrestricted=2011-01-28
track FL_DNase_27
bigDataUrl FL_DNase_27.bigWig
shortLabel FL DNase 27 17
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6099 Pcnt=90 DonorID:H-22727)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-22727
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22727 donor_age="101 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6099 Hotspot_Percentile=90 GSM=GSM530662 dateUnrestricted=2011-01-28
track FL_DNase_4B
bigDataUrl FL_DNase_4B.bigWig
shortLabel FL DNase 4B 07
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4924 Pcnt=60 DonorID:H-22934B)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-22934B
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22934B donor_age="day 108" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4924 Hotspot_Percentile=60 GSM=GSM595915 dateUnrestricted=2011-06-21
track FL_DNase_90
bigDataUrl FL_DNase_90.bigWig
shortLabel FL DNase 90 85
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3625 Pcnt=20 DonorID:H-23090)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23090
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23090 donor_age="day 103" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3625 Hotspot_Percentile=20 GSM=GSM595916 dateUnrestricted=2011-06-21
track FL_DNase_47
bigDataUrl FL_DNase_47.bigWig
shortLabel FL DNase 47 66
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.389 Pcnt=30 DonorID:H-23247)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23247
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23247 donor_age="day 67" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.389 Hotspot_Percentile=30 GSM=GSM595921 dateUnrestricted=2011-06-21
track FL_DNase_66_51
bigDataUrl FL_DNase_66_51.bigWig
shortLabel FL DNase 66 51
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5007 Pcnt=65 DonorID:H-23266)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23266
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5007 Hotspot_Percentile=65 GSM=GSM595925 dateUnrestricted=2011-06-21
track FL_DNase_66_24
bigDataUrl FL_DNase_66_24.bigWig
shortLabel FL DNase 66 24
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6395 Pcnt=92 DonorID:H-23266)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23266
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6395 Hotspot_Percentile=92 GSM=GSM595924 dateUnrestricted=2011-06-21
track FL_DNase_84_09
bigDataUrl FL_DNase_84_09.bigWig
shortLabel FL DNase 84 09
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5432 Pcnt=77 DonorID:H-23284)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23284
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5432 Hotspot_Percentile=77 GSM=GSM595927 dateUnrestricted=2011-06-21
track FL_DNase_84_20
bigDataUrl FL_DNase_84_20.bigWig
shortLabel FL DNase 84 20
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.494 Pcnt=62 DonorID:H-23284)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23284
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.494 Hotspot_Percentile=62 GSM=GSM595929 dateUnrestricted=2011-06-21
track FL_DNase_65
bigDataUrl FL_DNase_65.bigWig
shortLabel FL DNase 65 27
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3588 Pcnt=17 DonorID:H-23365)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=FL assayType=DNase donorID=H-23365
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23365 donor_age="day 108" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3588 Hotspot_Percentile=17 GSM=GSM595930 dateUnrestricted=2011-06-21
track IMR90_DNase_59
bigDataUrl IMR90_DNase_59.bigWig
shortLabel IMR90 DNase 59 59
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2914 Pcnt=5 Library:DS11759)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=IMR90 assayType=DNase donorID=DS11759
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2914 Hotspot_Percentile=5 GSM=GSM468792 dateUnrestricted=2010-10-06
track IMR90_DNase_64
bigDataUrl IMR90_DNase_64.bigWig
shortLabel IMR90 DNase 64 64
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2892 Pcnt=2 Library:DS11764)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=IMR90 assayType=DNase donorID=DS11764
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2892 Hotspot_Percentile=2 GSM=GSM468801 dateUnrestricted=2010-10-06
track IMR90_DNase_19
bigDataUrl IMR90_DNase_19.bigWig
shortLabel IMR90 DNase 19 19
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4554 Pcnt=57 Library:DS13219)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=IMR90 assayType=DNase donorID=DS13219
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4554 Hotspot_Percentile=57 GSM=GSM530665 dateUnrestricted=2011-01-28
track IMR90_DNase_29
bigDataUrl IMR90_DNase_29.bigWig
shortLabel IMR90 DNase 29 29
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3425 Pcnt=15 Library:DS13229)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=IMR90 assayType=DNase donorID=DS13229
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3425 Hotspot_Percentile=15 GSM=GSM530666 dateUnrestricted=2011-01-28
track MCD34_DNase_38
bigDataUrl MCD34_DNase_38.bigWig
shortLabel MCD34 DNase 38 99
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3195 Pcnt=10 DonorID:RO00738)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO00738
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 00738" donor_age="49 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3195 Hotspot_Percentile=10 GSM=GSM530664 dateUnrestricted=2011-01-28
track MCD34_DNase_80
bigDataUrl MCD34_DNase_80.bigWig
shortLabel MCD34 DNase 80 71
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5473 Pcnt=82 DonorID:RO01480)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01480
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01480" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5473 Hotspot_Percentile=82 GSM=GSM530658 dateUnrestricted=2011-01-28
track MCD34_DNase_92_06
bigDataUrl MCD34_DNase_92_06.bigWig
shortLabel MCD34 DNase 92 06
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4157 Pcnt=47 DonorID:RO01492)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01492
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4157 Hotspot_Percentile=47 GSM=GSM595919 dateUnrestricted=2011-06-21
track MCD34_DNase_92_74
bigDataUrl MCD34_DNase_92_74.bigWig
shortLabel MCD34 DNase 92 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5938 Pcnt=87 DonorID:RO01492)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01492
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5938 Hotspot_Percentile=87 GSM=GSM530659 dateUnrestricted=2011-01-28
track MCD34_DNase_08
bigDataUrl MCD34_DNase_08.bigWig
shortLabel MCD34 DNase 08 02
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3758 Pcnt=25 DonorID:RO01508)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01508
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01508" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3758 Hotspot_Percentile=25 GSM=GSM493386 dateUnrestricted=2011-06-21
track MCD34_DNase_17
bigDataUrl MCD34_DNase_17.bigWig
shortLabel MCD34 DNase 17 29
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4378 Pcnt=55 DonorID:RO01517)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01517
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01517" donor_age="year 43" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4378 Hotspot_Percentile=55 GSM=GSM595917 dateUnrestricted=2011-06-21
track MCD34_DNase_20
bigDataUrl MCD34_DNase_20.bigWig
shortLabel MCD34 DNase 20 85
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5165 Pcnt=70 DonorID:RO01520)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01520
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01520" donor_age="50 years" donor_health_status=NA donor_sex=Female donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5165 Hotspot_Percentile=70 GSM=GSM530660 dateUnrestricted=2011-01-28
track MCD34_DNase_27
bigDataUrl MCD34_DNase_27.bigWig
shortLabel MCD34 DNase 27 66
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3399 Pcnt=12 DonorID:RO01527)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01527
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01527" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3399 Hotspot_Percentile=12 GSM=GSM493387 dateUnrestricted=2011-06-21
track MCD34_DNase_35_74
bigDataUrl MCD34_DNase_35_74.bigWig
shortLabel MCD34 DNase 35 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6446 Pcnt=95 DonorID:RO01535)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01535
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6446 Hotspot_Percentile=95 GSM=GSM493384 dateUnrestricted=2011-06-21
track MCD34_DNase_35_97
bigDataUrl MCD34_DNase_35_97.bigWig
shortLabel MCD34 DNase 35 97
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3815 Pcnt=27 DonorID:RO01535)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01535
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3815 Hotspot_Percentile=27 GSM=GSM595918 dateUnrestricted=2011-06-21
track MCD34_DNase_36_36
bigDataUrl MCD34_DNase_36_36.bigWig
shortLabel MCD34 DNase 36 36
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3003 Pcnt=7 DonorID:RO01536)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01536
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3003 Hotspot_Percentile=7 GSM=GSM595914 dateUnrestricted=2011-06-21
track MCD34_DNase_36_39
bigDataUrl MCD34_DNase_36_39.bigWig
shortLabel MCD34 DNase 36 39
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3943 Pcnt=35 DonorID:RO01536)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01536
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3943 Hotspot_Percentile=35 GSM=GSM530652 dateUnrestricted=2011-01-28
track MCD34_DNase_49
bigDataUrl MCD34_DNase_49.bigWig
shortLabel MCD34 DNase 49 34
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6542 Pcnt=100 DonorID:RO01549)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01549
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6542 Hotspot_Percentile=100 GSM=GSM530657 dateUnrestricted=2011-01-28
track MCD34_DNase_62
bigDataUrl MCD34_DNase_62.bigWig
shortLabel MCD34 DNase 62 96
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3667 Pcnt=22 DonorID:RO01562)
subTrack EdaccRelease2DNaseViewCOV
subGroups view=COV sampleType=MCD34 assayType=DNase donorID=RO01562
type bigWig 1 80
noInherit on
color 0,150,0
#itemRgb on
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3667 Hotspot_Percentile=22 GSM=GSM530663 dateUnrestricted=2011-01-28
track EdaccRelease2UCSFRNA
compositeTrack on
shortLabel RNA
longLabel RNA-seq Signal from REMC/UCSF-UBC
group edacc2
subGroup1 view Views ALN=Alignments COV=Coverage CG=CpG_Score
subGroup2 sampleType Sample_Type BLEC=Breast_Luminal_Epithelial_Cells BMC=Breast_Myoepithelial_Cells Bv=Breast_vHMEC H1=H1Es
subGroup3 assayType Assay_Type mRNA=mRNA-Seq smRNA=smRNA-Seq
subGroup4 donorID Donor/Library RM035=RM035 NA=NA H1EScd1_batch2_vial2=H1EScd1_batch2_vial2 H1EScd1_batch2_vial1=H1EScd1_batch2_vial1
dimensions dimensionX=assayType dimensionY=sampleType
sortOrder assayType=+ sampleType=+ donorID=+
dividers assayType
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 10
visibility hide
type bed 3
track EdaccRelease2UCSFRNAViewCOV
shortLabel Coverage
view COV
maxHeightPixels 64:32:16
subTrack EdaccRelease2UCSFRNA
track BreLum_mRNA_RM035
bigDataUrl BreLum_mRNA_RM035.bigWig
shortLabel BLEC mRNA 35
longLabel Breast_Luminal_Epithelial_Cells mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=BLEC assayType=mRNA donorID=RM035
type bigWig 0 127
noInherit on
color 66,113,255
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Luminal Epithelial" markers=CD227+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM543029 dateUnrestricted=2011-02-17
track BreMyo_mRNA_RM035
bigDataUrl BreMyo_mRNA_RM035.bigWig
shortLabel BMC mRNA 35
longLabel Breast_Myoepithelial_Cells mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=BMC assayType=mRNA donorID=RM035
type bigWig 0 127
noInherit on
color 66,113,255
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Myoepithelial" markers=CD10+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM543031 dateUnrestricted=2011-02-17
track BrevHM_mRNA_RM035
bigDataUrl BrevHM_mRNA_RM035.bigWig
shortLabel Bv mRNA 35
longLabel Breast vHMEC mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=Bv assayType=mRNA donorID=RM035
type bigWig 0 127
noInherit on
color 66,113,255
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type=mRNA-Seq extraction_protocol="McManus Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.1" rna_preparation_initial_rna_qnty=10ug rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=100-300bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C hold" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM613867 dateUnrestricted=2011-07-28
track BrevHM_smRNA_RM035
bigDataUrl BrevHM_smRNA_RM035.bigWig
shortLabel Bv smRNA 35
longLabel Breast vHMEC smRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=Bv assayType=smRNA donorID=RM035
type bigWig 0 127
noInherit on
color 0,43,173
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type=smRNA-Seq extraction_protocol="Total RNA was extracted using Trizol from Invitrogen as per manufacturer's instuctions." extraction_protocol_smrna_enrichment="The small RNA fraction was separated by electrophoresis on a Novex 10% TBE-Urea gel and the fraction between approximately 14-30nt was excised. The excisd fraction was then eluted from gel fragements, followed by EtOH precipitation and was resuspended in 6.3ul." smrna_preparation_initial_smrna_qnty="1000 ng" rna_preparation_5'_rna_adapter_sequence="5' GUUCAGAGUUCUACAGUCCGACGAUC 3'" rna_preparation_3'_rna_adapter_sequence="5' pUCGUAUGCCGUCUUCUGCUUGidT 3' (p=phosphate, idT=inverted deoxythyidine)" rna_preparation_reverse_transcription_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" rna_preparation_3'_rna_adapter_ligation_protocol="3' RNA adapter ligation was set up with 6.3ul of purified 5' ligation product, 1.2ul of 10uM 3' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion)), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). The ligation reaction was incubated at 16oC overnight." rna_preparation_5'_rna_adapter_ligation_protocol="5' RNA adapter ligation was set up with 6.2ul of purified small RNA fraction (14-30nt), 1.3ul of 5uM 5' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). Ligation reaction was incubated at 16oC overnight." rna_preparation_reverse_transcription_protocol="To 4.5ul of purified ligated RNA, 0.5ul of 100uM Small RNA RT-Primer was added and heat denatured at 70oC for 2 mins. Sample was then placed on a rack at room temperature and the following reagents were added immediately to the sample (2.0ul of 5X First Strand Buffer, 0.65ul of 10mM dNTPs (Invitrogen), 1ul of 100mM DTT (Invitrogen) and 0.5ul of RNaseOUT (40U/ul from Invitrogen). Reaction was heated at 48oC for 3mins. 1.0ul of Superscript II RT (200U/ul from Invitrogen) was added to the reaction and was incubated at 44oC for 1 hr. After 1hr of incubation, tube was placed on ice. 12ul of DEPC water was added to the first strand cDNA product to make a final total volume of approximately 20ul." library_generation_pcr_template="10ul of the first strand cDNA product was used in the PCR" library_generation_pcr_polymerase_type="Phusion DNA Polymerase (Hot Start), 2U/ul (from NEB)" library_generation_pcr_thermocycling_program="98°C for 30sec; 98°C for 10sec, 60°C for 30sec, 72°C for 15sec for 15 cycles; 72°C for 5min" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA 3'" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" library_generation_pcr_primer_conc=0.25uM library_generation_pcr_product_isolation_protocol="PCR product was separated by electrophoresis on 8% TBE Novex Gel and the PCR product between 92-125bp was excised. Product was then eluted from gel fragements, followed by EtOH precipitation" GSM=GSM543034 dateUnrestricted=2011-02-17
track H1_mRNA_vial2
bigDataUrl H1_mRNA_vial2.bigWig
shortLabel H1 mRNA l2
longLabel H1 Cell Line mRNA-seq Signal from REMC/UCSF-UBC (DonorID:H1EScd1 batch2 vial2)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=H1 assayType=mRNA donorID=H1EScd1_batch2_vial2
type bigWig 0 127
noInherit on
color 66,113,255
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule= disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male batch=#2 experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM484408 dateUnrestricted=2010-10-07
track H1_smRNA_vial1
bigDataUrl H1_smRNA_vial1.bigWig
shortLabel H1 smRNA l1
longLabel H1 Cell Line smRNA-seq Signal from REMC/UCSF-UBC (DonorID:H1EScd1 batch2 vial1)
subTrack EdaccRelease2UCSFRNAViewCOV
subGroups view=COV sampleType=H1 assayType=smRNA donorID=H1EScd1_batch2_vial1
type bigWig 0 127
noInherit on
color 0,43,173
# itemRgb on
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule= disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type=smRNA-Seq extraction_protocol="Total RNA was extracted using Trizol from Invitrogen as per manufacturer's instuctions." extraction_protocol_smrna_enrichment="The small RNA fraction was separated by electrophoresis on a Novex 10% TBE-Urea gel and the fraction between approximately 14-30nt was excised. The excisd fraction was then eluted from gel fragements, followed by EtOH precipitation and was resuspended in 6.3ul." smrna_preparation_initial_smrna_qnty="10000 ng" rna_preparation_5'_rna_adapter_sequence="5' GUUCAGAGUUCUACAGUCCGACGAUC 3'" rna_preparation_3'_rna_adapter_sequence="5' pUCGUAUGCCGUCUUCUGCUUGidT 3' (p=phosphate, idT=inverted deoxythyidine)" rna_preparation_reverse_transcription_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" rna_preparation_3'_rna_adapter_ligation_protocol="3' RNA adapter ligation was set up with 6.3ul of purified 5' ligation product, 1.2ul of 10uM 3' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion)), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). The ligation reaction was incubated at 16oC overnight." rna_preparation_5'_rna_adapter_ligation_protocol="5' RNA adapter ligation was set up with 6.2ul of purified small RNA fraction (14-30nt), 1.3ul of 5uM 5' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). Ligation reaction was incubated at 16oC overnight." rna_preparation_reverse_transcription_protocol="To 4.5ul of purified ligated RNA, 0.5ul of 100uM Small RNA RT-Primer was added and heat denatured at 70oC for 2 mins. Sample was then placed on a rack at room temperature and the following reagents were added immediately to the sample (2.0ul of 5X First Strand Buffer, 0.65ul of 10mM dNTPs (Invitrogen), 1ul of 100mM DTT (Invitrogen) and 0.5ul of RNaseOUT (40U/ul from Invitrogen). Reaction was heated at 48oC for 3mins. 1.0ul of Superscript II RT (200U/ul from Invitrogen) was added to the reaction and was incubated at 44oC for 1 hr. After 1hr of incubation, tube was placed on ice. 12ul of DEPC water was added to the first strand cDNA product to make a final total volume of approximately 20ul." library_generation_pcr_template="10ul of the first strand cDNA product was used in the PCR" library_generation_pcr_polymerase_type="Phusion DNA Polymerase (Hot Start), 2U/ul (from NEB)" library_generation_pcr_thermocycling_program="98°C for 30sec; 98°C for 10sec, 60°C for 30sec, 72°C for 15sec for 15 cycles; 72°C for 5min" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA 3'" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" library_generation_pcr_primer_conc=0.25uM library_generation_pcr_product_isolation_protocol="PCR product was separated by electrophoresis on 8% TBE Novex Gel and the PCR product between 92-125bp was excised. Product was then eluted from gel fragements, followed by EtOH precipitation" GSM=GSM450239 dateUnrestricted=2010-10-07
track EdaccRelease2UCSFHistone
compositeTrack on
shortLabel UCSF Histone
longLabel Histone Modification by Chip-seq Signal from REMC/UCSF
group edacc2
subGroup1 view Views ALN=Alignments COV=Coverage CG=CpG_Score
subGroup2 sampleType Sample_Type BMC=Breast_Myoepithelial_Cells Bv=Breast_vHMEC CD4N=CD4_Naive_Primary_Cells CD8N=CD8_Naive_Primary_Cells H1=H1Es PBM=Peripheral_Blood_Mononuclear_Primary_Cells
BreLumRM035=Breast_Luminal_Epithelial_Cells_RM035 BreMyoRM035=Breast_Myoepithelial_Cells_RM035 BreMyoRM066=Breast_Myoepithelial_Cells_RM066 BreMyoRM080=Breast_Myoepithelial_Cells_RM080 BrevHM035=Breast_vHMEC_RM035 CD4NTC001=CD4_Naive_Primary_Cells_TC001 CD8NTC001=CD8_Naive_Primary_Cells_TC001 CD8NTC010=CD8_Naive_Primary_Cells_TC010 H1H1EScd1_A=H1ES_cd1-A H1H1EScd1_D=H1ES_cd1-D H1H1EScd2_B=H1ES_cd2-B H1H1EScd2_C=H1ES_cd2-C H1TOTAL=H1Es_TOTAL H1TOTAL_2=H1Es_TOTAL-2 PBMC010=Peripheral_Blood_Mononuclear_Primary_Cells_TC010 PBMC012=Peripheral_Blood_Mononuclear_Primary_Cells_TC012
subGroup3 assayType Assay_Type H2BK20ac=H2BK20ac H3K27me3=H3K27me3 H3K4me3=H3K4me3 H3K9me3=H3K9me3 H2AK5ac=H2AK5ac H3K36me3=H3K36me3 H3K56ac=H3K56ac H4K20me1=H4K20me1 H2BK120ac=H2BK120ac H3K18ac=H3K18ac H3K4ac=H3K4ac H3K79me1=H3K79me1 H4K5ac=H4K5ac H2BK12ac=H2BK12ac H3K23me2=H3K23me2 H3K4me1=H3K4me1 H3K79me2=H3K79me2 H4K91ac=H4K91ac H2BK15ac=H2BK15ac H3K27ac=H3K27ac H3K4me2=H3K4me2 H3K9ac=H3K9ac Input=Input
subGroup4 donorID Donor/Library NA=NA RM035=RM035 RM066=RM066 RM080=RM080 TC001=TC001 TC010=TC010 TC012=TC012
dimensions dimensionX=assayType dimensionY=sampleType
sortOrder assayType=+ sampleType=+ donorID=+
dividers assayType
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 6
visibility hide
type bed 3
track EdaccRelease2UCSFHistoneViewCOV
shortLabel Coverage
view COV
maxHeightPixels 64:32:16
subTrack EdaccRelease2UCSFHistone
track H1_H3K36me3_H1EScd1_A
bigDataUrl H1_H3K36me3_H1EScd1_A.bigWig
shortLabel H1 H3K36me3 A
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.245 Pcnt=45 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male batch=#1 experiment_type="Histone H3K36me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=32.7ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=30uL chip_protocol_antibody_amount=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=NA Hotspot_Score=0.245 Hotspot_Percentile=45 GSM=GSM428296 dateUnrestricted=2010-05-03
track BreMyo_H3K9me3_RM080
bigDataUrl BreMyo_H3K9me3_RM080.bigWig
shortLabel BMC H3K9me3 80
longLabel Breast_Myoepithelial_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2698 Pcnt=86 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K9me3 donorID=RM080
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=63-271bp chip_antibody=H3K9me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb056050 chip_antibody_lot=A930042 Hotspot_Score=0.2698 Hotspot_Percentile=86 GSM=GSM613886 dateUnrestricted=2011-08-11
track H1_H3K4me3_H1EScd1_A
bigDataUrl H1_H3K4me3_H1EScd1_A.bigWig
shortLabel H1 H3K4me3 A
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5868 Pcnt=82 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage="REMC batch1" medium="CDI protocol" sex=Male experiment_type="Histone H3K4me1" extraction_protocol=n/a extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=n/a chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=1 Hotspot_Score=0.5868 Hotspot_Percentile=82 GSM=GSM410808 dateUnrestricted=2010-05-03
track BreMyo_H3K4me3_RM066
bigDataUrl BreMyo_H3K4me3_RM066.bigWig
shortLabel BMC H3K4me3 66
longLabel Breast_Myoepithelial_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3786 Pcnt=48 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K4me3 donorID=RM066
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=10ug size_fraction=NA chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.3786 Hotspot_Percentile=48 GSM=GSM613869 dateUnrestricted=2011-08-11
track BreMyo_H3K27me3_RM066
bigDataUrl BreMyo_H3K27me3_RM066.bigWig
shortLabel BMC H3K27me3 66
longLabel Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1583 Pcnt=37 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K27me3 donorID=RM066
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K27me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.33ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=NA chip_antibody=H3K27me3 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-069-050 chip_antibody_lot=A299-00241 Hotspot_Score=0.1583 Hotspot_Percentile=37 GSM=GSM613872 dateUnrestricted=2011-08-11
track BreMyo_H3K9me3_RM066
bigDataUrl BreMyo_H3K9me3_RM066.bigWig
shortLabel BMC H3K9me3 66
longLabel Breast_Myoepithelial_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3223 Pcnt=90 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K9me3 donorID=RM066
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.3ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=NA chip_antibody=H3K9me3 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-056-050 chip_antibody_lot=A93-0042 Hotspot_Score=0.3223 Hotspot_Percentile=90 GSM=GSM613871 dateUnrestricted=2011-08-11
track BrevHM_H3K4me3_RM035
bigDataUrl BrevHM_H3K4me3_RM035.bigWig
shortLabel Bv H3K4me3 35 15
longLabel Breast_vHMEC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5139 Pcnt=72 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=H3K4me3 donorID=RM035
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=81-281bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.5139 Hotspot_Percentile=72 GSM=GSM613874 dateUnrestricted=2011-08-11
track H1_H3K36me3_H1EScd2_B
bigDataUrl H1_H3K36me3_H1EScd2_B.bigWig
shortLabel H1 H3K36me3 B
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3604 Pcnt=79 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K36me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K36me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=395432 Hotspot_Score=0.3604 Hotspot_Percentile=79 GSM=GSM450268 dateUnrestricted=2010-10-07
track PBMC_H3K36me3_TC010
bigDataUrl PBMC_H3K36me3_TC010.bigWig
shortLabel PBM H3K36me3 10 24
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4862 Pcnt=100 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K36me3 donorID=TC010
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=73-372bp chip_antibody=H3K36me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9763S chip_antibody_lot=1 Hotspot_Score=0.4862 Hotspot_Percentile=100 GSM=GSM613880 dateUnrestricted=2011-08-11
track BreMyo_Input_RM080
bigDataUrl BreMyo_Input_RM080.bigWig
shortLabel BMC Input 80
longLabel Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0094 Pcnt=30 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=Input donorID=RM080
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="ChIP-Seq Input" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol=Input chip_protocol_chromatin_amount=2.08ug size_fraction=46-291bp Hotspot_Score=0.0094 Hotspot_Percentile=30 GSM=GSM613897 dateUnrestricted=2011-08-11
track H1_H3K4me3_H1EScd2_C
bigDataUrl H1_H3K4me3_H1EScd2_C.bigWig
shortLabel H1 H3K4me3 C
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.7097 Pcnt=95 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me3 donorID=NA
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K4me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="7.06 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=2 Hotspot_Score=0.7097 Hotspot_Percentile=95 GSM=GSM432392 dateUnrestricted=2010-05-03
track H1_Input_TOTAL_2
bigDataUrl H1_Input_TOTAL_2.bigWig
shortLabel H1 Input 2
longLabel H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1575 Pcnt=85 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="ChIP-Seq Input" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=Input chip_protocol_chromatin_amount="35.3 ug" Hotspot_Score=0.1575 Hotspot_Percentile=85 GSM=GSM450270 dateUnrestricted=2010-12-22
track BrevHM_Input_S1995
bigDataUrl BrevHM_Input_S1995.bigWig
shortLabel Bv Input 35 95
longLabel Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.019 Pcnt=33 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=Input donorID=RM035
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=25min chip_protocol=Input chip_protocol_chromatin_amount=100ng size_fraction=213-563bp Hotspot_Score=0.019 Hotspot_Percentile=33 GSM=GSM613890 dateUnrestricted=2011-08-11
track PBMC_H3K9ac_TC012
bigDataUrl PBMC_H3K9ac_TC012.bigWig
shortLabel PBM H3K9ac 12 44
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1502 Pcnt=17 DonorID:TC012)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K9ac donorID=TC012
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=92-253bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1502 Hotspot_Percentile=17 GSM=GSM613883 dateUnrestricted=2011-08-11
track BrevHM_H3K9me3_RM035
bigDataUrl BrevHM_H3K9me3_RM035.bigWig
shortLabel Bv H3K9me3 35 17
longLabel Breast_vHMEC H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1198 Pcnt=37 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=H3K9me3 donorID=RM035
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=260-572bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.1198 Hotspot_Percentile=37 GSM=GSM613875 dateUnrestricted=2011-08-11
track BrevHM_H3K4me1_S2618
bigDataUrl BrevHM_H3K4me1_S2618.bigWig
shortLabel Bv H3K4me1 35 18
longLabel Breast_vHMEC H3K4me1HS2618 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3533 Pcnt=37 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=H3K4me1 donorID=RM035
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=3ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=37-279bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.3533 Hotspot_Percentile=37 GSM=GSM613876 dateUnrestricted=2011-08-11
track H1_Input_TOTAL
bigDataUrl H1_Input_TOTAL.bigWig
shortLabel H1 Input d1
longLabel H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.033 Pcnt=42 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=Input donorID=NA
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a sex=Male batch=#1 experiment_type="ChIP-Seq Input" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol=Input chip_protocol_chromatin_amount=NA Hotspot_Score=0.033 Hotspot_Percentile=42 GSM=GSM428289 dateUnrestricted=2010-05-03
track BreMyo_H3K9ac_RM080
bigDataUrl BreMyo_H3K9ac_RM080.bigWig
shortLabel BMC H3K9ac 80
longLabel Breast_Myoepithelial_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1622 Pcnt=26 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K9ac donorID=RM080
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K9ac" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=10ul size_fraction=44-291bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signalling" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1622 Hotspot_Percentile=26 GSM=GSM613889 dateUnrestricted=2011-08-11
track PBMC_H3K9ac_TC010
bigDataUrl PBMC_H3K9ac_TC010.bigWig
shortLabel PBM H3K9ac 10 23
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2855 Pcnt=66 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K9ac donorID=TC010
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=50-372bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.2855 Hotspot_Percentile=66 GSM=GSM613879 dateUnrestricted=2011-08-11
track CD8N_H3K4me3_TC001
bigDataUrl CD8N_H3K4me3_TC001.bigWig
shortLabel CD8N H3K4me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2562 Pcnt=20 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K4me3 donorID=TC001
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="5 ul" chip_antibody=H3K4me3 size_fraction=400-600bp chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.2562 Hotspot_Percentile=20 GSM=GSM613811 dateUnrestricted=2011-08-11
track PBMC_H3K27me3_TC010
bigDataUrl PBMC_H3K27me3_TC010.bigWig
shortLabel PBM H3K27me3 10 21
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2764 Pcnt=69 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K27me3 donorID=TC010
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=4ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=271-517bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.2764 Hotspot_Percentile=69 GSM=GSM613877 dateUnrestricted=2011-08-11
track H1_H3K9me3_H1EScd2_B
bigDataUrl H1_H3K9me3_H1EScd2_B.bigWig
shortLabel H1 H3K9me3 B
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3856 Pcnt=97 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=NA
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K9me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=492774 Hotspot_Score=0.3856 Hotspot_Percentile=97 GSM=GSM450266 dateUnrestricted=2010-10-07
track H1_H3K27me3_H1EScd1_A
bigDataUrl H1_H3K27me3_H1EScd1_A.bigWig
shortLabel H1 H3K27me3 A
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2469 Pcnt=58 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K27me3 donorID=NA
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male batch=#1 experiment_type="Histone H3K27me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=30uL chip_protocol_antibody_amount=NA chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733 chip_antibody_lot=1 Hotspot_Score=0.2469 Hotspot_Percentile=58 GSM=GSM428295 dateUnrestricted=2010-05-03
track BrevHM_Input_S2620
bigDataUrl BrevHM_Input_S2620.bigWig
shortLabel Bv Input 35 20
longLabel Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0258 Pcnt=39 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=Input donorID=RM035
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=500ng size_fraction=39-322bp Hotspot_Score=0.0258 Hotspot_Percentile=39 GSM=GSM613892 dateUnrestricted=2011-08-11
track CD4N_H3K9ac_TC001
bigDataUrl CD4N_H3K9ac_TC001.bigWig
shortLabel CD4N H3K9ac 01
longLabel CD4_Naive_Primary_Cells Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2771 Pcnt=60 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD4N assayType=H3K9ac donorID=TC001
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive Primary Cell" markers=CD4+,CD45RA+ donor_id=TC001 donor_age=21 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=10ul chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.2771 Hotspot_Percentile=60 GSM=GSM543004 dateUnrestricted=2011-02-17
track BreMyo_H3K4me1_RM080
bigDataUrl BreMyo_H3K4me1_RM080.bigWig
shortLabel BMC H3K4me1 80
longLabel Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3773 Pcnt=51 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K4me1 donorID=RM080
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=59-295bp chip_antibody=H3K4me1 chip_antibody_provider=diagenode chip_antibody_catalog=pAb037050 chip_antibody_lot=A3990011 Hotspot_Score=0.3773 Hotspot_Percentile=51 GSM=GSM613885 dateUnrestricted=2011-08-11
track CD8N_H3K27me3_TC001
bigDataUrl CD8N_H3K27me3_TC001.bigWig
shortLabel CD8N H3K27me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1489 Pcnt=31 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K27me3 donorID=TC001
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="10 ul" chip_antibody=H3K27me3 size_fraction=200-400bp chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.1489 Hotspot_Percentile=31 GSM=GSM613815 dateUnrestricted=2011-08-11
track BreMyo_H3K36me3_RM080
bigDataUrl BreMyo_H3K36me3_RM080.bigWig
shortLabel BMC H3K36me3 80
longLabel Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.324 Pcnt=72 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K36me3 donorID=RM080
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=2.5ug size_fraction=37-266bp chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=134025 Hotspot_Score=0.324 Hotspot_Percentile=72 GSM=GSM613888 dateUnrestricted=2011-08-11
track PBMC_H3K4me1_TC012
bigDataUrl PBMC_H3K4me1_TC012.bigWig
shortLabel PBM H3K4me1 12 45
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1534 Pcnt=7 DonorID:TC012)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K4me1 donorID=TC012
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=3ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=81-331bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.1534 Hotspot_Percentile=7 GSM=GSM613884 dateUnrestricted=2011-08-11
track BrevHM_H3K4me1_S1994
bigDataUrl BrevHM_H3K4me1_S1994.bigWig
shortLabel Bv H3K4me1 35 94
longLabel Breast_vHMEC H3K4me1HS1994 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2869 Pcnt=26 DonorID:RM035)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=Bv assayType=H3K4me1 donorID=RM035
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=25min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=47-347bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.2869 Hotspot_Percentile=26 GSM=GSM613868 dateUnrestricted=2011-08-11
track BreMyo_H3K36me3_RM066
bigDataUrl BreMyo_H3K36me3_RM066.bigWig
shortLabel BMC H3K36me3 66
longLabel Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2882 Pcnt=60 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K36me3 donorID=RM066
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.3ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=6.25ul size_fraction=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050-100 chip_antibody_lot=134025 Hotspot_Score=0.2882 Hotspot_Percentile=60 GSM=GSM613873 dateUnrestricted=2011-08-11
track CD4N_H3K36me3_TC001
bigDataUrl CD4N_H3K36me3_TC001.bigWig
shortLabel CD4N H3K36me3 01
longLabel CD4_Naive_Primary_Cells Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3205 Pcnt=70 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD4N assayType=H3K36me3 donorID=TC001
type bigWig 0 30
noInherit on
color 0,194,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive Primary Cell" markers=CD4+,CD45RA+ donor_id=TC001 donor_age=21 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=2ug chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=395432 Hotspot_Score=0.3205 Hotspot_Percentile=70 GSM=GSM543035 dateUnrestricted=2011-02-17
track CD8N_H3K9me3_TC001
bigDataUrl CD8N_H3K9me3_TC001.bigWig
shortLabel CD8N H3K9me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1293 Pcnt=39 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K9me3 donorID=TC001
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="2 ug" chip_antibody=H3K9me3 chip_antibody_provider=Diagenode size_fraction=400-600bp chip_antibody_catalog=pAb-056-050 chip_antibody_lot=A93-0012 Hotspot_Score=0.1293 Hotspot_Percentile=39 GSM=GSM613812 dateUnrestricted=2011-08-11
track H1_H3K9ac_H1EScd1_A
bigDataUrl H1_H3K9ac_H1EScd1_A.bigWig
shortLabel H1 H3K9ac A
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2077 Pcnt=37 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9ac donorID=NA
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage="REMC batch1" medium="CDI protocol" sex=Male experiment_type="Histone H3K9ac" extraction_protocol=n/a extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=n/a chip_antibody=H3K9Ac chip_antibody_provider=Millipore chip_antibody_catalog=07-352 chip_antibody_lot=24661 Hotspot_Score=0.2077 Hotspot_Percentile=37 GSM=GSM410807 dateUnrestricted=2010-05-03
track CD8N_H3K4me3_TC010
bigDataUrl CD8N_H3K4me3_TC010.bigWig
shortLabel CD8N H3K4me3 10
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2599 Pcnt=21 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K4me3 donorID=TC010
type bigWig 0 30
noInherit on
color 0,117,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers=CD8+,CD45RA+ donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XY" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=9ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=78-313bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.2599 Hotspot_Percentile=21 GSM=GSM613881 dateUnrestricted=2011-08-11
track PBMC_Input_S2625
bigDataUrl PBMC_Input_S2625.bigWig
shortLabel PBM Input 10 25
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0645 Pcnt=53 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=Input donorID=TC010
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=1ug size_fraction=172-451bp Hotspot_Score=0.0645 Hotspot_Percentile=53 GSM=GSM613893 dateUnrestricted=2011-08-11
track H1_H3K9me3_H1EScd1_A
bigDataUrl H1_H3K9me3_H1EScd1_A.bigWig
shortLabel H1 H3K9me3 A
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2167 Pcnt=73 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K9me3 donorID=NA
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium="CDI protocol" sex=Male batch=#1 experiment_type="Histone H3K9me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=NA chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=492774 Hotspot_Score=0.2167 Hotspot_Percentile=73 GSM=GSM428291 dateUnrestricted=2010-05-03
track PBMC_Input_HS2626
bigDataUrl PBMC_Input_HS2626.bigWig
shortLabel PBM Input 10 26
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0434 Pcnt=45 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=Input donorID=TC010
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=1ug size_fraction=38-269bp Hotspot_Score=0.0434 Hotspot_Percentile=45 GSM=GSM613894 dateUnrestricted=2011-08-11
track CD8N_Input_TC001
bigDataUrl CD8N_Input_TC001.bigWig
shortLabel CD8N Input 01
longLabel CD8_Naive_Primary_Cells Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0211 Pcnt=35 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=Input donorID=TC001
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol=Input size_fraction=200-400bp chip_protocol_chromatin_amount="1 ug" Hotspot_Score=0.0211 Hotspot_Percentile=35 GSM=GSM613816 dateUnrestricted=2011-08-11
track BreMyo_Input_RM066
bigDataUrl BreMyo_Input_RM066.bigWig
shortLabel BMC Input 66
longLabel Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0159 Pcnt=32 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=Input donorID=RM066
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="ChIP-Seq Input" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher Sonic Dismembrator 550" extraction_protocol_sonication_cycles=10min chip_protocol=Input chip_protocol_chromatin_amount=1.16ug size_fraction=100-300bp Hotspot_Score=0.0159 Hotspot_Percentile=32 GSM=GSM613891 dateUnrestricted=2011-08-11
track CD8N_H3K4me1_TC001
bigDataUrl CD8N_H3K4me1_TC001.bigWig
shortLabel CD8N H3K4me1 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3514 Pcnt=35 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K4me1 donorID=TC001
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="2 ug" size_fraction=400-600bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.3514 Hotspot_Percentile=35 GSM=GSM613814 dateUnrestricted=2011-08-11
#track CD8N_Input_TC010
#bigDataUrl CD8N_Input_TC010.bigWig
#shortLabel CD8N Input 10
#longLabel CD8_Naive_Primary_Cells Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2181 Pcnt=92 DonorID:TC010)
#subTrack EdaccRelease2UCSFHistoneViewCOV
#subGroups view=COV sampleType=CD8N assayType=Input donorID=TC010
#type bigWig 0 30
#noInherit on
#color 135,206,235
#autoScale off
#maxHeightPixels 64:32:16
#priority 1
#metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers=CD8+,CD45RA+ donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XY" parity=NA experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=450ng size_fraction=81-300bp Hotspot_Score=0.2181 Hotspot_Percentile=92 GSM=GSM613895 dateUnrestricted=
track PBMC_Input_TC012
bigDataUrl PBMC_Input_TC012.bigWig
shortLabel PBM Input 12 43
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0725 Pcnt=56 DonorID:TC012)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=Input donorID=TC012
type bigWig 0 30
noInherit on
color 135,206,235
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=100ng size_fraction=93-315bp Hotspot_Score=0.0725 Hotspot_Percentile=56 GSM=GSM613896 dateUnrestricted=2011-08-11
track PBMC_H3K9me3_TC012
bigDataUrl PBMC_H3K9me3_TC012.bigWig
shortLabel PBM H3K9me3 12 42
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.206 Pcnt=69 DonorID:TC012)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K9me3 donorID=TC012
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=270-474bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.206 Hotspot_Percentile=69 GSM=GSM613882 dateUnrestricted=2011-08-11
track BreMyo_H3K27me3_RM080
bigDataUrl BreMyo_H3K27me3_RM080.bigWig
shortLabel BMC H3K27me3 80
longLabel Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2704 Pcnt=65 DonorID:RM080)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K27me3 donorID=RM080
type bigWig 0 30
noInherit on
color 204,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K27me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=50-276bp chip_antibody=H3K27me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb069050 chip_antibody_lot=A29900241 Hotspot_Score=0.2704 Hotspot_Percentile=65 GSM=GSM613887 dateUnrestricted=2011-08-11
track H1_H3K4me1_H1EScd1_D
bigDataUrl H1_H3K4me1_H1EScd1_D.bigWig
shortLabel H1 H3K4me1 D
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3605 Pcnt=42 DonorID:NA)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=H1 assayType=H3K4me1 donorID=NA
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#1 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K4me1" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.3605 Hotspot_Percentile=42 GSM=GSM434762 dateUnrestricted=2010-05-03
track CD8N_H3K9ac_TC001
bigDataUrl CD8N_H3K9ac_TC001.bigWig
shortLabel CD8N H3K9ac 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1685 Pcnt=31 DonorID:TC001)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=CD8N assayType=H3K9ac donorID=TC001
type bigWig 0 30
noInherit on
color 84,168,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" size_fraction=200-400bp chip_protocol_antibody_amount="10 ul" chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1685 Hotspot_Percentile=31 GSM=GSM613813 dateUnrestricted=2011-08-11
track BreMyo_H3K4me1_RM066
bigDataUrl BreMyo_H3K4me1_RM066.bigWig
shortLabel BMC H3K4me1 66
longLabel Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2918 Pcnt=28 DonorID:RM066)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=BMC assayType=H3K4me1 donorID=RM066
type bigWig 0 30
noInherit on
color 0,133,66
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=NA chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-011 Hotspot_Score=0.2918 Hotspot_Percentile=28 GSM=GSM613870 dateUnrestricted=2011-08-11
track PBMC_H3K9me3_TC010
bigDataUrl PBMC_H3K9me3_TC010.bigWig
shortLabel PBM H3K9me3 10 22
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1958 Pcnt=66 DonorID:TC010)
subTrack EdaccRelease2UCSFHistoneViewCOV
subGroups view=COV sampleType=PBM assayType=H3K9me3 donorID=TC010
type bigWig 0 30
noInherit on
color 179,0,92
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=223-531bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.1958 Hotspot_Percentile=66 GSM=GSM613878 dateUnrestricted=2011-08-11
track EdaccRelease2Methylation
compositeTrack on
shortLabel DNA Methylation
longLabel DNA Methylation from REMC
group edacc2
subGroup1 view Views ALN=Alignments COV1=MeDIP_Coverage COV2=MRE_Coverage COV3=RRBS_Coverage COV4=BS_Coverage
subGroup2 sampleType Sample_Type AK=Adult_Kidney BLEC=Breast_Luminal_Epithelial_Cells BMC=Breast_Myoepithelial_Cells BSC=Breast_Stem_Cells Bv=Breast_vHMEC CD19=CD19_Primary_Cells CD34=CD34_Primary_Cells CD4M=CD4_Memory_Primary_Cells CD4N=CD4_Naive_Primary_Cells CD8N=CD8_Naive_Primary_Cells CM=Colonic_Mucosa DM=Duodenum_Mucosa ESI3=ES-I3 ESWA7=ES-WA7 H1BMP4=H1-BMP4 H1=H1Es HUES1=HUES1 HUES28=HUES28 HUES3=HUES3 HUES48=HUES48 HUES49=HUES49 HUES53=HUES53 HUES62=HUES62 HUES63=HUES63 HUES64=HUES64 HUES65=HUES65 HUES66=HUES66 HUES6=HUES6 HUES8=HUES8 HUES9=HUES9 IMR90=IMR90 iPS11a=iPS11a iPS11b=iPS11b iPS15b=iPS15b iPS17a=iPS17a iPS17b=iPS17b iPS18a=iPS18a iPS18b=iPS18b iPS18c=iPS18c iPS20b=iPS20b PBM=Peripheral_Blood_Mononuclear_Primary_Cells PI=Pancreatic_Islets RM=Rectal_Mucosa RSM=Rectal_Smooth_Muscle SM=Skeletal_Muscle SSM=Stomach_Smooth_Muscle
subGroup3 assayType Assay_Type MeDIP=MeDIP MRE=MRE BS=Bisulfite_Seq RRBS=RRBS
subGroup4 donorID Donor/Library RM071=RM071 27=27 28=28 30=30 31=31 32=32 61=61 62=62 63=63 CD19_0/0/00=CD19_0/0/00 CD34_0/0/00=CD34_0/0/00 HS1376=HS1376 HS1473=HS1473 methylC-seq_h1+bmp4_r1a=methylC-seq_h1+bmp4_r1a methylC-seq_h1_r2a=methylC-seq_h1_r2a methylC-seq_imr90_r1a=methylC-seq_imr90_r1a NA=NA pancreaticisletsnormal_0/0/00=pancreaticisletsnormal_0/0/00 RM035=RM035 RM037=RM037 RM066=RM066 RM070=RM070 RM071=RM071 RRBS354/RRBS355=RRBS354/RRBS355 RRBS356/RRBS357/Solexa-11964=RRBS356/RRBS357/Solexa-11964 RRBS366/RRBS367=RRBS366/RRBS367 RRBS398/RRBS399=RRBS398/RRBS399 RRBS418/RRBS419=RRBS418/RRBS419 RRBS420/RRBS421=RRBS420/RRBS421 RRBS516/RRBS517=RRBS516/RRBS517 RRBS519=RRBS519 RRBS520/RRBS521=RRBS520/RRBS521 RRBS524/RRBS525=RRBS524/RRBS525 RRBS534/RRBS535=RRBS534/RRBS535 RRBS536/RRBS537=RRBS536/RRBS537 RRBS540/RRBS541=RRBS540/RRBS541 RRBS542/RRBS543=RRBS542/RRBS543 RRBS548/RRBS549=RRBS548/RRBS549 RRBS550/RRBS551=RRBS550/RRBS551 RRBS552/RRBS553=RRBS552/RRBS553 RRBS554=RRBS554 RRBS556/RRBS557=RRBS556/RRBS557 RRBS569/RRBS571=RRBS569/RRBS571 RRBS589/RRBS590=RRBS589/RRBS590 RRBS591/RRBS592=RRBS591/RRBS592 RRBS677/RRBS678=RRBS677/RRBS678 RRBS768/RRBS769/RRBS770/RRBS771=RRBS768/RRBS769/RRBS770/RRBS771 RRBS772/RRBS772/RRBS775=RRBS772/RRBS772/RRBS775 RRBS776/RRBS777/RRBS778/RRBS779=RRBS776/RRBS777/RRBS778/RRBS779 Solexa-11956/Solexa-11957=Solexa-11956/Solexa-11957 Solexa-11958/Solexa-11959=Solexa-11958/Solexa-11959 Solexa-11961=Solexa-11961 Solexa-13232/Solexa-13233=Solexa-13232/Solexa-13233 Solexa-13317/Solexa-13235=Solexa-13317/Solexa-13235 Solexa-13943=Solexa-13943 Solexa-17914=Solexa-17914 Solexa-17917/Solexa-17944=Solexa-17917/Solexa-17944 Solexa-17950/Solexa-17937=Solexa-17950/Solexa-17937 TC003=TC003 TC007=TC007 TC009=TC009 JOC13=JOC13 RM037=RM037
dimensions dimensionX=assayType dimensionY=sampleType
sortOrder assayType=+ sampleType=+ donorID=+
dividers assayType
#hierachy view ALN=2 COV=3 CG=4
dragAndDrop subTracks
priority 8
visibility full
type bed 3
track EdaccRelease2MethylViewCOV1
shortLabel MeDIP_Coverage
view COV1
visibility hide
maxHeightPixels 64:32:16
subTrack EdaccRelease2Methylation
track H1_MeDIP_76
bigDataUrl H1_MeDIP_76.bigWig
shortLabel H1 MeDIP 76
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3687 Pcnt=62 Library:HS1376)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=H1 assayType=MeDIP donorID=HS1376
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=pluripotent differentiation_stage=undifferentiated differentiation_method=NA passage=30 medium="CDI protocol" Sex=Male batch=#1 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=5ug medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3687 Hotspot_Percentile=62 GSM=GSM543016 dateUnrestricted=2011-07-28
track H1_MeDIP_03
bigDataUrl H1_MeDIP_03.bigWig
shortLabel H1 MeDIP 03
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3021 Pcnt=37 Library:JOC13)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=H1 assayType=MeDIP donorID=JOC13
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3021 Hotspot_Percentile=37 GSM=GSM456941 dateUnrestricted=2010-12-22
track CD8N_MeDIP_07
bigDataUrl CD8N_MeDIP_07.bigWig
shortLabel CD8N MeDIP 07
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4017 Pcnt=75 DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD8N assayType=MeDIP donorID=TC007
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4017 Hotspot_Percentile=75 GSM=GSM613917 dateUnrestricted=2011-07-28
track BLEC_MeDIP_35
bigDataUrl BLEC_MeDIP_35.bigWig
shortLabel BLEC MeDIP 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4531 Pcnt=87 DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BLEC assayType=MeDIP donorID=RM035
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Hlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4531 Hotspot_Percentile=87 GSM=GSM493615 dateUnrestricted=2010-12-22
track BMC_MeDIP_35
bigDataUrl BMC_MeDIP_35.bigWig
shortLabel BMC MeDIP 35
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4554 Pcnt=91 DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BMC assayType=MeDIP donorID=RM035
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Myoepithelial" markers=CD10+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4554 Hotspot_Percentile=91 GSM=GSM543017 dateUnrestricted=2011-02-17
track BLEC_MeDIP_66
bigDataUrl BLEC_MeDIP_66.bigWig
shortLabel BLEC MeDIP 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.291 Pcnt=33 DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BLEC assayType=MeDIP donorID=RM066
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=8060 Hotspot_Score=0.291 Hotspot_Percentile=33 GSM=GSM613856 dateUnrestricted=2011-07-28
track CD4N_MeDIP_03
bigDataUrl CD4N_MeDIP_03.bigWig
shortLabel CD4N MeDIP 03
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2893 Pcnt=29 DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD4N assayType=MeDIP donorID=TC003
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2893 Hotspot_Percentile=29 GSM=GSM543025 dateUnrestricted=2011-02-17
track BSC_MeDIP_35
bigDataUrl BSC_MeDIP_35.bigWig
shortLabel BSC MeDIP 35
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4841 Pcnt=100 DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BSC assayType=MeDIP donorID=RM035
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Breast stem cell" markers=CD73+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4841 Hotspot_Percentile=100 GSM=GSM543019 dateUnrestricted=2011-02-17
track PBM_MeDIP_07
bigDataUrl PBM_MeDIP_07.bigWig
shortLabel PBM MeDIP 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.0094 Pcnt=30 DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=PBM assayType=MeDIP donorID=TC007
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.0094 Hotspot_Percentile=30 GSM=GSM613911 dateUnrestricted=2011-07-28
track CD4M_MeDIP_07
bigDataUrl CD4M_MeDIP_07.bigWig
shortLabel CD4M MeDIP 07
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3391 Pcnt=50 DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD4M assayType=MeDIP donorID=TC007
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3391 Hotspot_Percentile=50 GSM=GSM613914 dateUnrestricted=2011-07-28
track BMC_MeDIP_66
bigDataUrl BMC_MeDIP_66.bigWig
shortLabel BMC MeDIP 66
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1854 Pcnt=8 DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BMC assayType=MeDIP donorID=RM066
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1854 Hotspot_Percentile=8 GSM=GSM613857 dateUnrestricted=2011-07-28
track CD4N_MeDIP_07
bigDataUrl CD4N_MeDIP_07.bigWig
shortLabel CD4N MeDIP 07
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4174 Pcnt=83 DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD4N assayType=MeDIP donorID=TC007
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4174 Hotspot_Percentile=83 GSM=GSM613913 dateUnrestricted=2011-07-28
track BSC_MeDIP_70
bigDataUrl BSC_MeDIP_70.bigWig
shortLabel BSC MeDIP 70
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3101 Pcnt=41 DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BSC assayType=MeDIP donorID=RM070
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3101 Hotspot_Percentile=41 GSM=GSM613847 dateUnrestricted=2011-07-28
track Bv_MeDIP_35
bigDataUrl Bv_MeDIP_35.bigWig
shortLabel Bv MeDIP 35
longLabel Breast vHMEC DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4648 Pcnt=95 DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=Bv assayType=MeDIP donorID=RM035
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543021 dateUnrestricted=2011-02-17
track BSC_MeDIP_71
bigDataUrl BSC_MeDIP_71.bigWig
shortLabel BSC MeDIP 71
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2697 Pcnt=25 DonorID:RM071)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BSC assayType=MeDIP donorID=RM071
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2697 Hotspot_Percentile=25 GSM=GSM613853 dateUnrestricted=2011-07-28
track PBM_MeDIP_03
bigDataUrl PBM_MeDIP_03.bigWig
shortLabel PBM MeDIP 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3758 Pcnt=66 DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=PBM assayType=MeDIP donorID=TC003
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3758 Hotspot_Percentile=66 GSM=GSM543023 dateUnrestricted=2011-02-17
track BLEC_MeDIP_37
bigDataUrl BLEC_MeDIP_37.bigWig
shortLabel BLEC MeDIP 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2494 Pcnt=16 DonorID:RM037)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BLEC assayType=MeDIP donorID=RM037
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM037 donor_age="39 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2494 Hotspot_Percentile=16 GSM=GSM613864 dateUnrestricted=2011-07-28
track CD4M_MeDIP_03
bigDataUrl CD4M_MeDIP_03.bigWig
shortLabel CD4M MeDIP 03
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.201 Pcnt=12 DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD4M assayType=MeDIP donorID=TC003
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.201 Hotspot_Percentile=12 GSM=GSM613862 dateUnrestricted=2011-07-28
track BMC_MeDIP_70
bigDataUrl BMC_MeDIP_70.bigWig
shortLabel BMC MeDIP 70
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3369 Pcnt=45 DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BMC assayType=MeDIP donorID=RM070
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3369 Hotspot_Percentile=45 GSM=GSM613846 dateUnrestricted=2011-07-28
#track BMC_MeDIP_71
#bigDataUrl BMC_MeDIP_71.bigWig
#shortLabel BMC MeDIP 71
#longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3537 Pcnt=54 DonorID:RM071)
#subTrack EdaccRelease2MethylViewCOV1
#subGroups view=COV1 sampleType=BMC assayType=MeDIP donorID=RM071
#type bigWig 0 30
#noInherit on
#color 100,0,0
#autoScale off
#maxHeightPixels 64:32:16
#priority 1
#metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3537 Hotspot_Percentile=54 GSM=GSM613850 dateUnrestricted=
track BLEC_MeDIP_70
bigDataUrl BLEC_MeDIP_70.bigWig
shortLabel BLEC MeDIP 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2634 Pcnt=20 DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BLEC assayType=MeDIP donorID=RM070
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2634 Hotspot_Percentile=20 GSM=GSM613843 dateUnrestricted=2011-07-28
#track BLEC_MeDIP_71
#bigDataUrl BLEC_MeDIP_71.bigWig
#shortLabel BLEC MeDIP 71
#longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4128 Pcnt=79 DonorID:RM071)
#subTrack EdaccRelease2MethylViewCOV1
#subGroups view=COV1 sampleType=BLEC assayType=MeDIP donorID=RM071
#type bigWig 0 30
#noInherit on
#color 100,0,0
#autoScale off
#maxHeightPixels 64:32:16
#priority 1
#metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4128 Hotspot_Percentile=79 GSM=GSM613852 dateUnrestricted=
track CD8N_MeDIP_03
bigDataUrl CD8N_MeDIP_03.bigWig
shortLabel CD8N MeDIP 03
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3667 Pcnt=58 DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=CD8N assayType=MeDIP donorID=TC003
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3667 Hotspot_Percentile=58 GSM=GSM543027 dateUnrestricted=2011-02-17
track BSC_MeDIP_66
bigDataUrl BSC_MeDIP_66.bigWig
shortLabel BSC MeDIP 66
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1738 Pcnt=4 DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV1
subGroups view=COV1 sampleType=BSC assayType=MeDIP donorID=RM066
type bigWig 0 30
noInherit on
color 100,0,0
autoScale off
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1738 Hotspot_Percentile=4 GSM=GSM613859 dateUnrestricted=2011-07-28
track EdaccRelease2MethylViewCOV2
shortLabel MRE_Coverage
view COV2
maxHeightPixels 64:32:16
subTrack EdaccRelease2Methylation
track CD4N_MRE_09
bigDataUrl CD4N_MRE_09.bigWig
shortLabel CD4N MRE 09
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD4N assayType=MRE donorID=TC009
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=34-284bp Percent_Reads_Mapping_To_Restriction_Fragments=99.59 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=96 GSM=GSM613920 dateUnrestricted=2011-07-28
track CD4M_MRE_07
bigDataUrl CD4M_MRE_07.bigWig
shortLabel CD4M MRE 07
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD4M assayType=MRE donorID=TC007
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=44-299bp Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=75 GSM=GSM613903 dateUnrestricted=2011-07-28
track BMC_MRE_70
bigDataUrl BMC_MRE_70.bigWig
shortLabel BMC MRE 70
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BMC assayType=MRE donorID=RM070
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-296 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.93 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=42 GSM=GSM613821 dateUnrestricted=2011-07-28
track CD4M_MRE_03
bigDataUrl CD4M_MRE_03.bigWig
shortLabel CD4M MRE 03
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD4M assayType=MRE donorID=TC003
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="1.5 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="50-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=95.8 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=17 GSM=GSM613842 dateUnrestricted=2011-07-28
track BSC_MRE_70
bigDataUrl BSC_MRE_70.bigWig
shortLabel BSC MRE 70
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BSC assayType=MRE donorID=RM070
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=1.5ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=33-265bp Percent_Reads_Mapping_To_Restriction_Fragments=97.68 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=35 GSM=GSM613907 dateUnrestricted=2011-07-28
track CD8N_MRE_03
bigDataUrl CD8N_MRE_03.bigWig
shortLabel CD8N MRE 03
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD8N assayType=MRE donorID=TC003
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=99.39 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=85 GSM=GSM543013 dateUnrestricted=2011-02-17
track BSC_MRE_71
bigDataUrl BSC_MRE_71.bigWig
shortLabel BSC MRE 71
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BSC assayType=MRE donorID=RM071
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.09 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=67 GSM=GSM613829 dateUnrestricted=2011-07-28
track PBM_MRE_09
bigDataUrl PBM_MRE_09.bigWig
shortLabel PBM MRE 09
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=PBM assayType=MRE donorID=TC009
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-298bp Percent_Reads_Mapping_To_Restriction_Fragments=99.61 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=100 GSM=GSM613919 dateUnrestricted=2011-07-28
track CD8N_MRE_09
bigDataUrl CD8N_MRE_09.bigWig
shortLabel CD8N MRE 09
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD8N assayType=MRE donorID=TC009
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=30-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=89 GSM=GSM613923 dateUnrestricted=2011-07-28
track Bv_MRE_35
bigDataUrl Bv_MRE_35.bigWig
shortLabel Bv MRE 35
longLabel Breast vHMEC DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=Bv assayType=MRE donorID=RM035
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" mre_protocol="Costello Lab Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=100-300bp Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543007 dateUnrestricted=2011-02-17
track PBM_MRE_03
bigDataUrl PBM_MRE_03.bigWig
shortLabel PBM MRE 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=PBM assayType=MRE donorID=TC003
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=98.99 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=64 GSM=GSM543009 dateUnrestricted=2011-02-17
track PBM_MRE_07
bigDataUrl PBM_MRE_07.bigWig
shortLabel PBM MRE 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=PBM assayType=MRE donorID=TC007
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=48-265bp Percent_Reads_Mapping_To_Restriction_Fragments=99.15 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=71 GSM=GSM613898 dateUnrestricted=2011-07-28
track CD4N_MRE_07
bigDataUrl CD4N_MRE_07.bigWig
shortLabel CD4N MRE 07
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD4N assayType=MRE donorID=TC007
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=38-271bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=92 GSM=GSM613901 dateUnrestricted=2011-07-28
track CD4N_MRE_03
bigDataUrl CD4N_MRE_03.bigWig
shortLabel CD4N MRE 03
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD4N assayType=MRE donorID=TC003
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Hotspot_Score=0.2771 Hotspot_Percentile=60 GSM=GSM543011 dateUnrestricted=2011-02-17
track H1_MRE_73
bigDataUrl H1_MRE_73.bigWig
shortLabel H1 MRE 73
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (Library:HS1473)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=H1 assayType=MRE donorID=HS1473
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage="pluripotent" differentiation_stage=undifferentiated differentiation_method=NA passage="32" medium="CDI Protocol" Sex=Male experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="1ug" mre_protocol_restriction_enzyme="MspI" mre_protocol_size_fraction="100-300bp" Percent_Reads_Mapping_To_Restriction_Fragments=90.19 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=10 GSM=GSM543005 dateUnrestricted=2011-07-21
track BLEC_MRE_70
bigDataUrl BLEC_MRE_70.bigWig
shortLabel BLEC MRE 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BLEC assayType=MRE donorID=RM070
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-336 bp" Percent_Reads_Mapping_To_Restriction_Fragments=96.3 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=25 GSM=GSM613818 dateUnrestricted=2011-07-28
track BLEC_MRE_71
bigDataUrl BLEC_MRE_71.bigWig
shortLabel BLEC MRE 71
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BLEC assayType=MRE donorID=RM071
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="55-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.88 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=39 GSM=GSM613826 dateUnrestricted=2011-07-28
track CD8N_MRE_07
bigDataUrl CD8N_MRE_07.bigWig
shortLabel CD8N MRE 07
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=CD8N assayType=MRE donorID=TC007
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=42-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.36 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=82 GSM=GSM613905 dateUnrestricted=2011-07-28
track BMC_MRE_71
bigDataUrl BMC_MRE_71.bigWig
shortLabel BMC MRE 71
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BMC assayType=MRE donorID=RM071
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=53-282bp Percent_Reads_Mapping_To_Restriction_Fragments=98.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=50 GSM=GSM613908 dateUnrestricted=2011-07-28
track BLEC_MRE_35
bigDataUrl BLEC_MRE_35.bigWig
shortLabel BLEC MRE 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BLEC assayType=MRE donorID=RM035
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=97.14 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=32 GSM=GSM493620 dateUnrestricted=2010-10-07
track H1_MRE_52
bigDataUrl H1_MRE_52.bigWig
shortLabel H1 MRE 52
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=H1 assayType=MRE donorID=NA
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a Sex=Male experiment_type="DNA Methylation" mre_protocol="costello lab protocol" mre_protocol_chromatin_amount=44ug mre_protocol_restriction_enzyme=HpaII,Hin6I,AciI mre_protocol_size_fraction=100-300bp Percent_Reads_Mapping_To_Restriction_Fragments=82.85 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=3 GSM=GSM428286 dateUnrestricted=2010-10-07
track H1_MRE_53
bigDataUrl H1_MRE_53.bigWig
shortLabel H1 MRE 53
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=H1 assayType=MRE donorID=NA
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=89.07 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=7 GSM=GSM450236 dateUnrestricted=2010-10-07
track BSC_MRE_66
bigDataUrl BSC_MRE_66.bigWig
shortLabel BSC MRE 66
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BSC assayType=MRE donorID=RM066
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.12 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=46 GSM=GSM613837 dateUnrestricted=2011-07-28
track BSC_MRE_35
bigDataUrl BSC_MRE_35.bigWig
shortLabel BSC MRE 35
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BSC assayType=MRE donorID=RM035
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="stem cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=96.86 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=28 GSM=GSM493626 dateUnrestricted=2010-10-07
track BMC_MRE_35
bigDataUrl BMC_MRE_35.bigWig
shortLabel BMC MRE 35
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BMC assayType=MRE donorID=RM035
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="myo epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=95.83 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=21 GSM=GSM493624 dateUnrestricted=2010-10-07
track BLEC_MRE_37
bigDataUrl BLEC_MRE_37.bigWig
shortLabel BLEC MRE 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM037)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BLEC assayType=MRE donorID=RM037
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA GSM=GSM493617 dateUnrestricted=2010-10-07
track BLEC_MRE_66
bigDataUrl BLEC_MRE_66.bigWig
shortLabel BLEC MRE 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BLEC assayType=MRE donorID=RM066
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=78 GSM=GSM613833 dateUnrestricted=2011-07-28
track BMC_MRE_66
bigDataUrl BMC_MRE_66.bigWig
shortLabel BMC MRE 66
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
subTrack EdaccRelease2MethylViewCOV2
subGroups view=COV2 sampleType=BMC assayType=MRE donorID=RM066
type bigWig 0 90000
noInherit on
color 0,100,0
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.79 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=60 GSM=GSM613834 dateUnrestricted=2011-07-28
track EdaccRelease2MethylViewCOV3
shortLabel RRBS_Coverage
view COV3
maxHeightPixels 64:32:16
subTrack EdaccRelease2Methylation
track iPS18b_RRBS_367
bigDataUrl iPS18b_RRBS_367.bigWig
shortLabel iPS18b RRBS 66
longLabel iPS-18b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS366/RRBS367)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS18b assayType=RRBS donorID=RRBS366/RRBS367
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=hiPS-18b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.74 GSM=GSM621695 dateUnrestricted=2011-08-11
track iPS18a_RRBS_399
bigDataUrl iPS18a_RRBS_399.bigWig
shortLabel iPS18a RRBS 98
longLabel iPS-18a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS398/RRBS399)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS18a assayType=RRBS donorID=RRBS398/RRBS399
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p30 line=hiPS-18a differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-140 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.52 GSM=GSM621696 dateUnrestricted=2011-08-11
track iPS20b_RRBS_592
bigDataUrl iPS20b_RRBS_592.bigWig
shortLabel iPS20b RRBS 91
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS591/RRBS592)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS20b assayType=RRBS donorID=RRBS591/RRBS592
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p43 line=hiPS-20b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-260 or 160-380" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-170 or 70-290" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.29 GSM=GSM621735 dateUnrestricted=2011-08-11
track HUES48_RRBS_549
bigDataUrl HUES48_RRBS_549.bigWig
shortLabel HUES48 RRBS 48
longLabel HUES48 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS548/RRBS549)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES48 assayType=RRBS donorID=RRBS548/RRBS549
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES48 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621598 dateUnrestricted=2011-08-11
track RM_RRBS_31
bigDataUrl RM_RRBS_31.bigWig
shortLabel RM RRBS 31
longLabel Rectal_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:31)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=RM assayType=RRBS donorID=31
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.89 GSM=GSM621702 dateUnrestricted=2011-08-11
track HUES63_RRBS_519
bigDataUrl HUES63_RRBS_519.bigWig
shortLabel HUES63 RRBS 19
longLabel HUES63 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS519)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES63 assayType=RRBS donorID=RRBS519
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES63 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.56 GSM=GSM621591 dateUnrestricted=2011-08-11
track CD19_RRBS__00
bigDataUrl CD19_RRBS__00.bigWig
shortLabel CD19 RRBS 0
longLabel CD19 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD19_0/0/00)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=CD19 assayType=RRBS donorID=CD19_0/0/00
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_0/0/00 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.37 GSM=GSM621560 dateUnrestricted=2011-08-11
track iPS11b_RRBS_421
bigDataUrl iPS11b_RRBS_421.bigWig
shortLabel iPS11b RRBS 20
longLabel iPS-11b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS420/RRBS421)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS11b assayType=RRBS donorID=RRBS420/RRBS421
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p13 line=hiPS-11b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.82 GSM=GSM621715 dateUnrestricted=2011-08-11
track iPS15b_RRBS_523
bigDataUrl iPS15b_RRBS_523.bigWig
shortLabel iPS15b RRBS 22
longLabel iPS-15b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17917/Solexa-17944)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS15b assayType=RRBS donorID=Solexa-17917/Solexa-17944
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621557 dateUnrestricted=2011-08-11
track HUES28_RRBS_543
bigDataUrl HUES28_RRBS_543.bigWig
shortLabel HUES28 RRBS 42
longLabel HUES28 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS542/RRBS543)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES28 assayType=RRBS donorID=RRBS542/RRBS543
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES28 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.08 GSM=GSM621606 dateUnrestricted=2011-08-11
track HUES8_RRBS_775
bigDataUrl HUES8_RRBS_775.bigWig
shortLabel HUES8 RRBS 72
longLabel HUES8 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS772/RRBS772/RRBS775)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES8 assayType=RRBS donorID=RRBS772/RRBS772/RRBS775
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage="p29 or p30" line="HUES_8p29 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.19 GSM=GSM621709 dateUnrestricted=2011-08-11
track PI_RRBS__00
bigDataUrl PI_RRBS__00.bigWig
shortLabel PI RRBS 0
longLabel Pancreatic_Islets DNA Methylation by RRBS Signal from REMC/Broad (DonorID:pancreaticisletsnormal_0/0/00)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=PI assayType=RRBS donorID=pancreaticisletsnormal_0/0/00
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_0/0/00" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.45 GSM=GSM621567 dateUnrestricted=2011-08-11
track HUES64_RRBS_521
bigDataUrl HUES64_RRBS_521.bigWig
shortLabel HUES64 RRBS 20
longLabel HUES64 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS520/RRBS521)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES64 assayType=RRBS donorID=RRBS520/RRBS521
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES64 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.11 GSM=GSM621594 dateUnrestricted=2011-08-11
track H1_RRBS_779
bigDataUrl H1_RRBS_779.bigWig
shortLabel H1 RRBS 76
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS776/RRBS777/RRBS778/RRBS779)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=H1 assayType=RRBS donorID=RRBS776/RRBS777/RRBS778/RRBS779
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage="p37 or p38" line="H1p37 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.65 GSM=GSM621705 dateUnrestricted=2011-08-11
track HUES6_RRBS_537
bigDataUrl HUES6_RRBS_537.bigWig
shortLabel HUES6 RRBS 36
longLabel HUES6 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS536/RRBS537)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES6 assayType=RRBS donorID=RRBS536/RRBS537
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p25 line="HUES 6" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-270 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-180 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.85 GSM=GSM621700 dateUnrestricted=2011-08-11
track ESI3_RRBS_349
bigDataUrl ESI3_RRBS_349.bigWig
shortLabel ESI3 RRBS 48
longLabel ES-I3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11956/Solexa-11957)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=ESI3 assayType=RRBS donorID=Solexa-11956/Solexa-11957
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage="49 or 45" medium="KSR or TESR" Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.96 GSM=GSM621348 dateUnrestricted=2011-08-11
track HUES66_RRBS_554
bigDataUrl HUES66_RRBS_554.bigWig
shortLabel HUES66 RRBS 54
longLabel HUES66 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS554)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES66 assayType=RRBS donorID=RRBS554
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p20 line=HUES66 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.65 GSM=GSM621592 dateUnrestricted=2011-08-11
track H1_RRBS_535
bigDataUrl H1_RRBS_535.bigWig
shortLabel H1 RRBS 34
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS534/RRBS535)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=H1 assayType=RRBS donorID=RRBS534/RRBS535
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=p32 line=H1 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.56 GSM=GSM621763 dateUnrestricted=2011-08-11
track H1_RRBS_361
bigDataUrl H1_RRBS_361.bigWig
shortLabel H1 RRBS 60
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13232/Solexa-13233)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=H1 assayType=RRBS donorID=Solexa-13232/Solexa-13233
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR Sex=Male batch=39805 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.75 GSM=GSM621357 dateUnrestricted=2011-08-11
track iPS20b_RRBS_527
bigDataUrl iPS20b_RRBS_527.bigWig
shortLabel iPS20b RRBS 26
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17950/Solexa-17937)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS20b assayType=RRBS donorID=Solexa-17950/Solexa-17937
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR Sex=Male batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.83 GSM=GSM621562 dateUnrestricted=2011-08-11
track HUES1_RRBS_771
bigDataUrl HUES1_RRBS_771.bigWig
shortLabel HUES1 RRBS 68
longLabel HUES1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS768/RRBS769/RRBS770/RRBS771)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES1 assayType=RRBS donorID=RRBS768/RRBS769/RRBS770/RRBS771
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage="p28 or p29" line="HUES_1p28 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.9 GSM=GSM621734 dateUnrestricted=2011-08-11
track iPS18c_RRBS_525
bigDataUrl iPS18c_RRBS_525.bigWig
shortLabel iPS18c RRBS 24
longLabel iPS-18c Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS524/RRBS525)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS18c assayType=RRBS donorID=RRBS524/RRBS525
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p36 line=hiPS-18c differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.9 GSM=GSM621725 dateUnrestricted=2011-08-11
track SSM_RRBS_28
bigDataUrl SSM_RRBS_28.bigWig
shortLabel SSM RRBS 28
longLabel Stomach_Smooth_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:28)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=SSM assayType=RRBS donorID=28
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.83 GSM=GSM621732 dateUnrestricted=2011-08-11
track iPS18c_RRBS_396
bigDataUrl iPS18c_RRBS_396.bigWig
shortLabel iPS18c RRBS 96
longLabel iPS-18c Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13943)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS18c assayType=RRBS donorID=Solexa-13943
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=90-260 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.0 GSM=GSM621564 dateUnrestricted=2011-08-11
track iPS15b_RRBS_357
bigDataUrl iPS15b_RRBS_357.bigWig
shortLabel iPS15b RRBS 56
longLabel iPS-15b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS356/RRBS357/Solexa-11964)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS15b assayType=RRBS donorID=RRBS356/RRBS357/Solexa-11964
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=hiPS-15b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.97 GSM=GSM621721 dateUnrestricted=2011-08-11
track SM_RRBS_62
bigDataUrl SM_RRBS_62.bigWig
shortLabel SM RRBS 62
longLabel Skeletal_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:62)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=SM assayType=RRBS donorID=62
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.77 GSM=GSM621726 dateUnrestricted=2011-08-11
track AK_RRBS_27
bigDataUrl AK_RRBS_27.bigWig
shortLabel AK RRBS 27
longLabel Adult_Kidney DNA Methylation by RRBS Signal from REMC/Broad (DonorID:27)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=AK assayType=RRBS donorID=27
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.74 GSM=GSM621713 dateUnrestricted=2011-08-11
track iPS20b_RRBS_353
bigDataUrl iPS20b_RRBS_353.bigWig
shortLabel iPS20b RRBS 53
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11961)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS20b assayType=RRBS donorID=Solexa-11961
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR Sex=Male batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=90-260 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.11 GSM=GSM621552 dateUnrestricted=2011-08-11
track RSM_RRBS_30
bigDataUrl RSM_RRBS_30.bigWig
shortLabel RSM RRBS 30
longLabel Rectal_Smooth_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:30)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=RSM assayType=RRBS donorID=30
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.97 GSM=GSM621730 dateUnrestricted=2011-08-11
track iPS17a_RRBS_419
bigDataUrl iPS17a_RRBS_419.bigWig
shortLabel iPS17a RRBS 18
longLabel iPS-17a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS418/RRBS419)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS17a assayType=RRBS donorID=RRBS418/RRBS419
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p14 line=hiPS-17a differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621699 dateUnrestricted=2011-08-11
track HUES9_RRBS_541
bigDataUrl HUES9_RRBS_541.bigWig
shortLabel HUES9 RRBS 40
longLabel HUES9 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS540/RRBS541)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES9 assayType=RRBS donorID=RRBS540/RRBS541
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p21 line=HUES9 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.86 GSM=GSM621718 dateUnrestricted=2011-08-11
track CD34_RRBS_515
bigDataUrl CD34_RRBS_515.bigWig
shortLabel CD34 RRBS 14
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=CD34 assayType=RRBS donorID=CD34_0/0/00
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.52 GSM=GSM621561 dateUnrestricted=2011-08-11
track HUES49_RRBS_557
bigDataUrl HUES49_RRBS_557.bigWig
shortLabel HUES49 RRBS 56
longLabel HUES49 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS556/RRBS557)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES49 assayType=RRBS donorID=RRBS556/RRBS557
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES49 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.35 GSM=GSM621603 dateUnrestricted=2011-08-11
track HUES62_RRBS_517
bigDataUrl HUES62_RRBS_517.bigWig
shortLabel HUES62 RRBS 16
longLabel HUES62 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS516/RRBS517)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES62 assayType=RRBS donorID=RRBS516/RRBS517
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p14 line=HUES62 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.37 GSM=GSM621595 dateUnrestricted=2011-08-11
track HUES53_RRBS_551
bigDataUrl HUES53_RRBS_551.bigWig
shortLabel HUES53 RRBS 50
longLabel HUES53 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS550/RRBS551)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES53 assayType=RRBS donorID=RRBS550/RRBS551
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES53 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.0 GSM=GSM621601 dateUnrestricted=2011-08-11
track ESWA7_RRBS_528
bigDataUrl ESWA7_RRBS_528.bigWig
shortLabel ESWA7 RRBS 28
longLabel ES-WA7 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17914)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=ESWA7 assayType=RRBS donorID=Solexa-17914
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=48.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=40-160 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.64 GSM=GSM621353 dateUnrestricted=2011-08-11
track H1_RRBS_678
bigDataUrl H1_RRBS_678.bigWig
shortLabel H1 RRBS 77
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS677/RRBS678)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=H1 assayType=RRBS donorID=RRBS677/RRBS678
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=p25 line="Human ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-290 or 170-430" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.8 GSM=GSM621765 dateUnrestricted=2011-08-11
track ESI3_RRBS_369
bigDataUrl ESI3_RRBS_369.bigWig
shortLabel ESI3 RRBS 68
longLabel ES-I3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13317/Solexa-13235)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=ESI3 assayType=RRBS donorID=Solexa-13317/Solexa-13235
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45.0 medium=TESR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.89 GSM=GSM621345 dateUnrestricted=2011-08-11
track iPS17b_RRBS_590
bigDataUrl iPS17b_RRBS_590.bigWig
shortLabel iPS17b RRBS 89
longLabel iPS-17b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS589/RRBS590)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS17b assayType=RRBS donorID=RRBS589/RRBS590
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-260 or 160-380" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-170 or 70-290" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.16 GSM=GSM621714 dateUnrestricted=2011-08-11
track SMSM_RRBS_63
bigDataUrl SMSM_RRBS_63.bigWig
shortLabel SM RRBS 63
longLabel Skeletal_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:63)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=SM assayType=RRBS donorID=63
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=99.08 GSM=GSM621727 dateUnrestricted=2011-08-11
track iPS11a_RRBS_355
bigDataUrl iPS11a_RRBS_355.bigWig
shortLabel iPS11a RRBS 54
longLabel iPS-11a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS354/RRBS355)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=iPS11a assayType=RRBS donorID=RRBS354/RRBS355
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p22 line="hiPS cells(3F)/11a(1)-P22" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.34 GSM=GSM621719 dateUnrestricted=2011-08-11
track CD34_RRBS_533
bigDataUrl CD34_RRBS_533.bigWig
shortLabel CD34 RRBS 32
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=CD34 assayType=RRBS donorID=CD34_0/0/00
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.28 GSM=GSM621559 dateUnrestricted=2011-08-11
track HUES65_RRBS_553
bigDataUrl HUES65_RRBS_553.bigWig
shortLabel HUES65 RRBS 52
longLabel HUES65 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS552/RRBS553)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES65 assayType=RRBS donorID=RRBS552/RRBS553
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES65 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.87 GSM=GSM621599 dateUnrestricted=2011-08-11
track ESWA7_RRBS_351
bigDataUrl ESWA7_RRBS_351.bigWig
shortLabel ESWA7 RRBS 50
longLabel ES-WA7 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11958/Solexa-11959)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=ESWA7 assayType=RRBS donorID=Solexa-11958/Solexa-11959
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=44.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.3 GSM=GSM621347 dateUnrestricted=2011-08-11
track CM_RRBS_32
bigDataUrl CM_RRBS_32.bigWig
shortLabel CM RRBS 32
longLabel Colonic_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:32)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=CM assayType=RRBS donorID=32
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.86 GSM=GSM621728 dateUnrestricted=2011-08-11
track HUES3_RRBS_571
bigDataUrl HUES3_RRBS_571.bigWig
shortLabel HUES3 RRBS 69
longLabel HUES3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS569/RRBS571)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=HUES3 assayType=RRBS donorID=RRBS569/RRBS571
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=HUES3 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="120-230 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="30-140 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.86 GSM=GSM621767 dateUnrestricted=2011-08-11
track DM_RRBS_61
bigDataUrl DM_RRBS_61.bigWig
shortLabel DM RRBS 61
longLabel Duodenum_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:61)
subTrack EdaccRelease2MethylViewCOV3
subGroups view=COV3 sampleType=DM assayType=RRBS donorID=61
type bigWig 0 90000
noInherit on
color 255,105,180
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.68 GSM=GSM621729 dateUnrestricted=2011-08-11
track EdaccRelease2MethylViewCOV4
shortLabel BS_Coverage
view COV4
visibility full
maxHeightPixels 64:32:16
subTrack EdaccRelease2Methylation
track H1_BisulfiteSeq_ed
bigDataUrl H1_BisulfiteSeq_ed.bigWig
shortLabel H1 BS 2a
longLabel H1 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_h1_r2a)
subTrack EdaccRelease2MethylViewCOV4
subGroups view=COV4 sampleType=H1 assayType=BS donorID=methylC-seq_h1_r2a
type bigWig 0 90000
noInherit on
color 0,0,133
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA batch=#1 differentiation_stage="embryonic stem cell" differentiation_method=NA passage=30 medium=TeSR sex=Male experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=97.24 GSM=GSM429321 dateUnrestricted=2010-07-13
track H1BMP4_Bisulfite_combined
bigDataUrl H1BMP4_Bisulfite_combined.bigWig
shortLabel H1BMP4 BS 1a
longLabel H1-BMP4 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_h1+bmp4_r1a)
subTrack EdaccRelease2MethylViewCOV4
subGroups view=COV4 sampleType=H1BMP4 assayType=BS donorID=methylC-seq_h1+bmp4_r1a
type bigWig 0 90000
noInherit on
color 0,0,133
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated by treatment with BMP4" differentiation_method="H1 cells were cultured in TeSR containing 50 ng/ml BMP4 for 5 days" passage="27, including 16 passages in TeSR" medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16ËšC for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95ËšC 2 min; 98ËšC 30 sec, 4 cycles of 98ËšC 15 sec, 60ËšC 30 sec, 72ËšC 4 min; 72ËšC 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.21 GSM=GSM602251 dateUnrestricted=2011-07-07
track IMR90_BisulfiteSeq_ed
bigDataUrl IMR90_BisulfiteSeq_ed.bigWig
shortLabel IMR90 BS 1a
longLabel IMR90 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_imr90_r1a)
subTrack EdaccRelease2MethylViewCOV4
subGroups view=COV4 sampleType=IMR90 assayType=BS donorID=methylC-seq_imr90_r1a
type bigWig 0 90000
noInherit on
color 0,0,133
autoScale on
maxHeightPixels 64:32:16
priority 1
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=99.43 GSM=GSM432687 dateUnrestricted=2010-07-13
track edaccContainerbyExperiment
superTrack on
shortLabel Summary
longLabel Summary
#release alpha
priority 1
track containeredacc2H2BK15ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2BK15ac Summary
longLabel EDACC Release II H2BK15ac Summary for 5 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H2BK15ac_04e
bigDataUrl H1_H2BK15ac_04.bigWig
shortLabel H1 H2BK15ac 04
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1444 Pcnt=40 Library:SAK204)
type bigWig 0 90000
parent containeredacc2H2BK15ac
color 180,102,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1444 Hotspot_Percentile=40 GSM=GSM605299 dateUnrestricted=2011-07-07
track H1_H2BK15ac_06e
bigDataUrl H1_H2BK15ac_06.bigWig
shortLabel H1 H2BK15ac 06
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1067 Pcnt=20 Library:YL206)
type bigWig 0 90000
parent containeredacc2H2BK15ac
color 136,102,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1067 Hotspot_Percentile=20 GSM=GSM605298 dateUnrestricted=2011-07-07
track IMR90_H2BK15ac_K42e
bigDataUrl IMR90_H2BK15ac_K42.bigWig
shortLabel IMR90 H2BK15ac 42
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4116 Pcnt=80 Library:SK42)
type bigWig 0 90000
parent containeredacc2H2BK15ac
color 92,102,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4116 Hotspot_Percentile=80 GSM=GSM521878 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L19e
bigDataUrl IMR90_H2BK15ac_L19.bigWig
shortLabel IMR90 H2BK15ac 19
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4578 Pcnt=100 Library:YL19)
type bigWig 0 90000
parent containeredacc2H2BK15ac
color 48,102,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4578 Hotspot_Percentile=100 GSM=GSM521875 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L69e
bigDataUrl IMR90_H2BK15ac_L69.bigWig
shortLabel IMR90 H2BK15ac 69
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2964 Pcnt=60 Library:YL69)
type bigWig 0 90000
parent containeredacc2H2BK15ac
color 4,102,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.2964 Hotspot_Percentile=60 GSM=GSM521877 dateUnrestricted=2010-12-22
track containeredacc2mRNA
container multiWig
superTrack edaccContainerbyExperiment
shortLabel mRNA Summary
longLabel EDACC Release II mRNA Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BreLum_mRNA_RM035e
bigDataUrl BreLum_mRNA_RM035.bigWig
shortLabel BLEC mRNA 35
longLabel Breast_Luminal_Epithelial_Cells mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containeredacc2mRNA
color 50,113,255
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Luminal Epithelial" markers=CD227+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM543029 dateUnrestricted=2011-02-17
track BreMyo_mRNA_RM035e
bigDataUrl BreMyo_mRNA_RM035.bigWig
shortLabel BMC mRNA 35
longLabel Breast_Myoepithelial_Cells mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containeredacc2mRNA
color 34,113,255
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Myoepithelial" markers=CD10+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM543031 dateUnrestricted=2011-02-17
track BrevHM_mRNA_RM035e
bigDataUrl BrevHM_mRNA_RM035.bigWig
shortLabel Bv mRNA 35
longLabel Breast vHMEC mRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containeredacc2mRNA
color 18,113,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type=mRNA-Seq extraction_protocol="McManus Lab Protocol" extraction_protocol_mrna_enrichment="Miltenyi-Biotec MACS mRNA purification" rna_preparation_initial_rna_qlty="RIN 9.1" rna_preparation_initial_rna_qnty=10ug rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT" library_generation_pcr_template=cDNA library_fragmentation="COVARIS E210" library_fragment_size_range=100-300bp library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C hold" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.5uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM613867 dateUnrestricted=2011-07-28
track H1_mRNA_vial2e
bigDataUrl H1_mRNA_vial2.bigWig
shortLabel H1 mRNA l2
longLabel H1 Cell Line mRNA-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2mRNA
color 2,113,255
metadata molecule= disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male batch=#2 experiment_type=mRNA-Seq extraction_protocol="Invitrogen Trizol RNA extraction" extraction_protocol_mrna_enrichment="Miltenyi-Biotec mRNA purification" extraction_protocol_fragmentation=NA mrna_preparation_initial_mrna_qnty=NA mrna_preparation_fragment_size_range=NA rna_preparation_5'_rna_adapter_sequence=NA rna_preparation_3'_rna_adapter_sequence=NA rna_preparation_reverse_transcription_primer_sequence=NNNNNN rna_preparation_5'_dephosphorylation=NA rna_preparation_5'_phosphorylation=NA rna_preparation_3'_rna_adapter_ligation_protocol=NA rna_preparation_5'_rna_adapter_ligation_protocol=NA rna_preparation_reverse_transcription_protocol="Invitrogen Superscript II RT protocol" library_generation_pcr_template=cDNA library_generation_pcr_polymerase_type=Phusion library_generation_pcr_thermocycling_program="98°C 30 sec, 10 cycle of 98°C 10 sec, 65°C 30 sec, 72°C 30 sec, then 72°C 5 min, 4°C forever" library_generation_pcr_number_cycles=10 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT" library_generation_pcr_primer_conc=0.4uM library_generation_pcr_product_isolation_protocol="8% Novex TBE PAGE gel purification" GSM=GSM484408 dateUnrestricted=2010-10-07
track containeredacc2H4K20me1
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H4K20me1 Summary
longLabel EDACC Release II H4K20me1 Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H4K20me1_53e
bigDataUrl H1_H4K20me1_53.bigWig
shortLabel H1 H4K20me1 53
longLabel H1 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1863 Pcnt=33 Library:YL253)
type bigWig 0 90000
parent containeredacc2H4K20me1
color 0,134,200
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.1863 Hotspot_Percentile=33 GSM=GSM605329 dateUnrestricted=2011-07-07
track IMR90_H4K20me1_L21e
bigDataUrl IMR90_H4K20me1_L21.bigWig
shortLabel IMR90 H4K20me1 21
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2312 Pcnt=67 Library:YL21)
type bigWig 0 90000
parent containeredacc2H4K20me1
color 0,68,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.2312 Hotspot_Percentile=67 GSM=GSM521915 dateUnrestricted=2010-12-22
track IMR90_H4K20me1_L59e
bigDataUrl IMR90_H4K20me1_L59.bigWig
shortLabel IMR90 H4K20me1 59
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.346 Pcnt=100 Library:YL59)
type bigWig 0 90000
parent containeredacc2H4K20me1
color 0,2,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.346 Hotspot_Percentile=100 GSM=GSM521917 dateUnrestricted=2010-12-22
track containeredacc2H3K4me2
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K4me2 Summary
longLabel EDACC Release II H3K4me2 Summary for 8 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H3K4me2_22e
bigDataUrl H1_H3K4me2_22.bigWig
shortLabel H1 H3K4me2 22
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6394 Pcnt=75 Library:LL322)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,72,41
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6394 Hotspot_Percentile=75 GSM=GSM602260 dateUnrestricted=2011-07-07
track H1_H3K4me2_96e
bigDataUrl H1_H3K4me2_96.bigWig
shortLabel H1 H3K4me2 96
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5517 Pcnt=50 Library:YL96)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,62,41
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.5517 Hotspot_Percentile=50 GSM=GSM602261 dateUnrestricted=2011-07-07
track MSCC_H3K4me2_hSKM1e
bigDataUrl MSCC_H3K4me2_hSKM1.bigWig
shortLabel MS H3K4me2 1
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.545 Pcnt=25 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,52,41
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.545 Hotspot_Percentile=25 GSM=GSM621742 dateUnrestricted=2011-08-12
track MSCC_H3K4me2_hSKM2e
bigDataUrl MSCC_H3K4me2_hSKM2.bigWig
shortLabel MS H3K4me2 2
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5496 Pcnt=38 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,42,41
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5496 Hotspot_Percentile=38 GSM=GSM621750 dateUnrestricted=2011-08-12
track MSCC_H3K4me2_hSKM3e
bigDataUrl MSCC_H3K4me2_hSKM3.bigWig
shortLabel MS H3K4me2 3
longLabel Muscle Satellite Cultured Cells H3K4me2 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5852 Pcnt=63 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,32,41
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me2 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab7766 chip_antibody_provider=Abcam chip_antibody_lot=56293 experiment_type="Histone H3K4me2" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5852 Hotspot_Percentile=63 GSM=GSM621758 dateUnrestricted=2011-08-12
track H9_H3K4me2_SK198e
bigDataUrl H9_H3K4me2_SK198.bigWig
shortLabel H9 H3K4me2 98
longLabel H9 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3454 Pcnt=13 Library:SK198)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,22,41
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=727055 Hotspot_Score=0.3454 Hotspot_Percentile=13 GSM=GSM605314 dateUnrestricted=2011-07-07
track IMR90_H3K4me2_232e
bigDataUrl IMR90_H3K4me2_232.bigWig
shortLabel IMR90 H3K4me2 32
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6838 Pcnt=100 Library:LL232)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,12,41
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6838 Hotspot_Percentile=100 GSM=GSM521899 dateUnrestricted=2010-12-22
track IMR90_H3K4me2_K07e
bigDataUrl IMR90_H3K4me2_K07.bigWig
shortLabel IMR90 H3K4me2 07
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6402 Pcnt=88 Library:SK07)
type bigWig 0 90000
parent containeredacc2H3K4me2
color 0,2,41
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6402 Hotspot_Percentile=88 GSM=GSM521900 dateUnrestricted=2010-12-22
track containeredacc2H3K27ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K27ac Summary
longLabel EDACC Release II H3K27ac Summary for 5 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H3K27ac_13e
bigDataUrl H1_H3K27ac_13.bigWig
shortLabel H1 H3K27ac 13
longLabel H1 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3968 Pcnt=50 Library:LL313)
type bigWig 0 90000
parent containeredacc2H3K27ac
color 0,150,120
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.3968 Hotspot_Percentile=50 GSM=GSM466732 dateUnrestricted=2010-12-22
track H9_H3K27ac_YL237e
bigDataUrl H9_H3K27ac_YL237.bigWig
shortLabel H9 H3K27ac 37
longLabel H9 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1947 Pcnt=33 Library:YL237)
type bigWig 0 90000
parent containeredacc2H3K27ac
color 0,150,90
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="300 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39133 chip_antibody_lot=19208002 Hotspot_Score=0.1947 Hotspot_Percentile=33 GSM=GSM605307 dateUnrestricted=2011-07-07
track IMR90_H3K27ac_231e
bigDataUrl IMR90_H3K27ac_231.bigWig
shortLabel IMR90 H3K27ac 31
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6371 Pcnt=67 Library:LL231)
type bigWig 0 90000
parent containeredacc2H3K27ac
color 0,150,60
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.6371 Hotspot_Percentile=67 GSM=GSM469966 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_235e
bigDataUrl IMR90_H3K27ac_235.bigWig
shortLabel IMR90 H3K27ac 35
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7232 Pcnt=100 Library:LL235)
type bigWig 0 90000
parent containeredacc2H3K27ac
color 0,150,30
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.7232 Hotspot_Percentile=100 GSM=GSM469967 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_L58e
bigDataUrl IMR90_H3K27ac_L58.bigWig
shortLabel IMR90 H3K27ac 58
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7 Pcnt=83 Library:YL58)
type bigWig 0 90000
parent containeredacc2H3K27ac
color 0,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=34624 Hotspot_Score=0.7 Hotspot_Percentile=83 GSM=GSM521887 dateUnrestricted=2010-12-22
track containeredacc2H2AK5ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2AK5ac Summary
longLabel EDACC Release II H2AK5ac Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H2AK5ac_01e
bigDataUrl H1_H2AK5ac_01.bigWig
shortLabel H1 H2AK5ac 01
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1178 Pcnt=17 Library:SAK201)
type bigWig 0 90000
parent containeredacc2H2AK5ac
color 146,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.1178 Hotspot_Percentile=17 GSM=GSM602258 dateUnrestricted=2011-07-07
track H1_H2AK5ac_97e
bigDataUrl H1_H2AK5ac_97.bigWig
shortLabel H1 H2AK5ac 97
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2032 Pcnt=33 Library:YL97)
type bigWig 0 90000
parent containeredacc2H2AK5ac
color 98,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.2032 Hotspot_Percentile=33 GSM=GSM602257 dateUnrestricted=2011-07-07
track IMR90_H2AK5ac_L20e
bigDataUrl IMR90_H2AK5ac_L20.bigWig
shortLabel IMR90 H2AK5ac 20
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4734 Pcnt=NA Library:YL20)
type bigWig 0 90000
parent containeredacc2H2AK5ac
color 50,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.4734 Hotspot_Percentile=NA GSM=GSM521866 dateUnrestricted=2010-12-22
track IMR90_H2AK5ac_L60e
bigDataUrl IMR90_H2AK5ac_L60.bigWig
shortLabel IMR90 H2AK5ac 60
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4598 Pcnt=50 Library:YL60)
type bigWig 0 90000
parent containeredacc2H2AK5ac
color 2,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab5152 chip_antibody_lot=496800 Hotspot_Score=0.4598 Hotspot_Percentile=50 GSM=GSM521868 dateUnrestricted=2010-12-22
track containeredacc2H3K56ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K56ac Summary
longLabel EDACC Release II H3K56ac Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H3K56ac_11e
bigDataUrl H1_H3K56ac_11.bigWig
shortLabel H1 H3K56ac 11
longLabel H1 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.231 Pcnt=33 Library:SAK211)
type bigWig 0 90000
parent containeredacc2H3K56ac
color 0,170,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-677" chip_antibody_lot=DAM1462569 Hotspot_Score=0.231 Hotspot_Percentile=33 GSM=GSM605317 dateUnrestricted=2011-07-07
track IMR90_H3K56ac_L05e
bigDataUrl IMR90_H3K56ac_L05.bigWig
shortLabel IMR90 H3K56ac 05
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3288 Pcnt=100 Library:YL05)
type bigWig 0 90000
parent containeredacc2H3K56ac
color 0,85,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3288 Hotspot_Percentile=100 GSM=GSM521902 dateUnrestricted=2010-12-22
track IMR90_H3K56ac_L61e
bigDataUrl IMR90_H3K56ac_L61.bigWig
shortLabel IMR90 H3K56ac 61
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3096 Pcnt=67 Library:YL61)
type bigWig 0 90000
parent containeredacc2H3K56ac
color 0,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3096 Hotspot_Percentile=67 GSM=GSM521903 dateUnrestricted=2010-12-22
track containeredacc2H2BK120ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2BK120ac Summary
longLabel EDACC Release II H2BK120ac Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
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windowingFunction mean
priority 1.4
track H1_H2BK120ac_06e
bigDataUrl H1_H2BK120ac_06.bigWig
shortLabel H1 H2BK120ac 06
longLabel H1 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.148 Pcnt=33 Library:SAK206)
type bigWig 0 90000
parent containeredacc2H2BK120ac
color 0,112,84
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39119 chip_antibody_lot=255 Hotspot_Score=0.148 Hotspot_Percentile=33 GSM=GSM605295 dateUnrestricted=2011-07-07
track IMR90_H2BK120ac_K15e
bigDataUrl IMR90_H2BK120ac_K15.bigWig
shortLabel IMR90 H2BK120ac 15
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5479 Pcnt=100 Library:SK15)
type bigWig 0 90000
parent containeredacc2H2BK120ac
color 0,56,84
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.5479 Hotspot_Percentile=100 GSM=GSM521870 dateUnrestricted=2010-12-22
track IMR90_H2BK120ac_L06e
bigDataUrl IMR90_H2BK120ac_L06.bigWig
shortLabel IMR90 H2BK120ac 06
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.492 Pcnt=67 Library:YL06)
type bigWig 0 90000
parent containeredacc2H2BK120ac
color 0,0,84
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.492 Hotspot_Percentile=67 GSM=GSM521869 dateUnrestricted=2010-12-22
track containeredacc2H2BK5ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2BK5ac Summary
longLabel EDACC Release II H2BK5ac Summary for 2 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H2BK5ac_02e
bigDataUrl H1_H2BK5ac_02.bigWig
shortLabel H1 H2BK5ac 02
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1906 Pcnt=50 Library:SAK202)
type bigWig 0 90000
parent containeredacc2H2BK5ac
color 97,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39123 chip_antibody_lot=229 Hotspot_Score=0.1906 Hotspot_Percentile=50 GSM=GSM605303 dateUnrestricted=2011-07-07
track H1_H2BK5ac_98e
bigDataUrl H1_H2BK5ac_98.bigWig
shortLabel H1 H2BK5ac 98
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2022 Pcnt=100 Library:YL98)
type bigWig 0 90000
parent containeredacc2H2BK5ac
color 0,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40886 chip_antibody_lot=529107 Hotspot_Score=0.2022 Hotspot_Percentile=100 GSM=GSM605302 dateUnrestricted=2011-07-07
track containeredacc2H3K23me2
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K23me2 Summary
longLabel EDACC Release II H3K23me2 Summary for 2 sample types
type bigWig 0 90000
configurable on
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maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
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windowingFunction mean
priority 1.4
track H1_H3K23me2_10e
bigDataUrl H1_H3K23me2_10.bigWig
shortLabel H1 H3K23me2 10
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3013 Pcnt=100 Library:SAK210)
type bigWig 0 90000
parent containeredacc2H3K23me2
color 0,75,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.3013 Hotspot_Percentile=100 GSM=GSM605306 dateUnrestricted=2011-07-07
track H1_H3K23me2_98e
bigDataUrl H1_H3K23me2_98.bigWig
shortLabel H1 H3K23me2 98
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.091 Pcnt=50 Library:YL198)
type bigWig 0 90000
parent containeredacc2H3K23me2
color 0,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=52 medium=mTeSER Sex=Male batch=H1Ep52 experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.091 Hotspot_Percentile=50 GSM=GSM605305 dateUnrestricted=2011-07-07
track containeredacc2H3K18ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K18ac Summary
longLabel EDACC Release II H3K18ac Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
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windowingFunction mean
priority 1.4
track H1_H3K18ac_08e
bigDataUrl H1_H3K18ac_08.bigWig
shortLabel H1 H3K18ac 08
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1969 Pcnt=25 Library:SAK208)
type bigWig 0 90000
parent containeredacc2H3K18ac
color 113,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=527530 Hotspot_Score=0.1969 Hotspot_Percentile=25 GSM=GSM602259 dateUnrestricted=2011-07-07
track H1_H3K18ac_21e
bigDataUrl H1_H3K18ac_21.bigWig
shortLabel H1 H3K18ac 21
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=50 Library:LL321)
type bigWig 0 90000
parent containeredacc2H3K18ac
color 76,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=122116 Hotspot_Score=0.3196 Hotspot_Percentile=50 GSM=GSM605304 dateUnrestricted=2011-07-07
track IMR90_H3K18ac_230e
bigDataUrl IMR90_H3K18ac_230.bigWig
shortLabel IMR90 H3K18ac 30
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6076 Pcnt=100 Library:LL230)
type bigWig 0 90000
parent containeredacc2H3K18ac
color 39,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.6076 Hotspot_Percentile=100 GSM=GSM469965 dateUnrestricted=2010-12-22
track IMR90_H3K18ac_K09e
bigDataUrl IMR90_H3K18ac_K09.bigWig
shortLabel IMR90 H3K18ac 09
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5626 Pcnt=75 Library:SK09)
type bigWig 0 90000
parent containeredacc2H3K18ac
color 2,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.5626 Hotspot_Percentile=75 GSM=GSM521884 dateUnrestricted=2010-12-22
track containeredacc2H3K23ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K23ac Summary
longLabel EDACC Release II H3K23ac Summary for 2 sample types
type bigWig 0 90000
configurable on
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track IMR90_H3K23ac_K18e
bigDataUrl IMR90_H3K23ac_K18.bigWig
shortLabel IMR90 H3K23ac 18
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3105 Pcnt=100 Library:SK18)
type bigWig 0 90000
parent containeredacc2H3K23ac
color 0,75,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.3105 Hotspot_Percentile=100 GSM=GSM521886 dateUnrestricted=2010-12-22
track IMR90_H3K23ac_L09e
bigDataUrl IMR90_H3K23ac_L09.bigWig
shortLabel IMR90 H3K23ac 09
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2996 Pcnt=50 Library:YL09)
type bigWig 0 90000
parent containeredacc2H3K23ac
color 0,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.2996 Hotspot_Percentile=50 GSM=GSM521885 dateUnrestricted=2010-12-22
track containeredacc2H3K14ac
container multiWig
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shortLabel H3K14ac Summary
longLabel EDACC Release II H3K14ac Summary for 2 sample types
type bigWig 0 90000
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maxHeightPixels 150:30:11
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track IMR90_H3K14ac_K17e
bigDataUrl IMR90_H3K14ac_K17.bigWig
shortLabel IMR90 H3K14ac 17
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3307 Pcnt=50 Library:SK17)
type bigWig 0 90000
parent containeredacc2H3K14ac
color 128,131,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.3307 Hotspot_Percentile=50 GSM=GSM521883 dateUnrestricted=2010-12-22
track IMR90_H3K14ac_L15e
bigDataUrl IMR90_H3K14ac_L15.bigWig
shortLabel IMR90 H3K14ac 15
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.367 Pcnt=100 Library:YL15)
type bigWig 0 90000
parent containeredacc2H3K14ac
color 1,131,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.367 Hotspot_Percentile=100 GSM=GSM521881 dateUnrestricted=2010-12-22
track containeredacc2H3K79me1
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K79me1 Summary
longLabel EDACC Release II H3K79me1 Summary for 7 sample types
type bigWig 0 90000
configurable on
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maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
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windowingFunction mean
priority 1.4
track H1_H3K79me1_73e
bigDataUrl H1_H3K79me1_73.bigWig
shortLabel H1 H3K79me1 73
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1751 Pcnt=29 Library:SAK73)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 219,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1751 Hotspot_Percentile=29 GSM=GSM605319 dateUnrestricted=2011-07-07
track H1_H3K79me1_82e
bigDataUrl H1_H3K79me1_82.bigWig
shortLabel H1 H3K79me1 82
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1822 Pcnt=43 Library:YL82)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 183,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1822 Hotspot_Percentile=43 GSM=GSM605318 dateUnrestricted=2011-07-07
track H1_H3K79me1_92e
bigDataUrl H1_H3K79me1_92.bigWig
shortLabel H1 H3K79me1 92
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.123 Pcnt=14 Library:YL192)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 147,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.123 Hotspot_Percentile=14 GSM=GSM605320 dateUnrestricted=2011-07-07
track IMR90_H3K79me1_103e
bigDataUrl IMR90_H3K79me1_103.bigWig
shortLabel IMR90 H3K79me1 03
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3893 Pcnt=100 Library:YL103)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 111,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=527479 Hotspot_Score=0.3893 Hotspot_Percentile=100 GSM=GSM521907 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_145e
bigDataUrl IMR90_H3K79me1_145.bigWig
shortLabel IMR90 H3K79me1 45
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3555 Pcnt=86 Library:YL145)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 75,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=679856 Hotspot_Score=0.3555 Hotspot_Percentile=86 GSM=GSM521908 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_K11e
bigDataUrl IMR90_H3K79me1_K11.bigWig
shortLabel IMR90 H3K79me1 11
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2999 Pcnt=57 Library:SK11)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 39,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=Ab2886 chip_antibody_lot=502497 Hotspot_Score=0.2999 Hotspot_Percentile=57 GSM=GSM521906 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_L16e
bigDataUrl IMR90_H3K79me1_L16.bigWig
shortLabel IMR90 H3K79me1 16
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3182 Pcnt=71 Library:YL16)
type bigWig 0 90000
parent containeredacc2H3K79me1
color 3,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886-100 chip_antibody_lot=502497 Hotspot_Score=0.3182 Hotspot_Percentile=71 GSM=GSM521904 dateUnrestricted=2010-12-22
track containeredacc2H3K9ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K9ac Summary
longLabel EDACC Release II H3K9ac Summary for 35 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K9ac_1e
bigDataUrl ADMSC_H3K9ac_1.bigWig
shortLabel ADMSC H3K9ac 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.395 Pcnt=71 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,164,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.395 Hotspot_Percentile=71 GSM=GSM621394 dateUnrestricted=2011-08-12
track AL_H3K9ac_3e
bigDataUrl AL_H3K9ac_3.bigWig
shortLabel AL H3K9ac 3.0
longLabel Adult Liver H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1628 Pcnt=29 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,160,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.1628 Hotspot_Percentile=29 GSM=GSM537705 dateUnrestricted=2011-01-28
track AL_H3K9ac_4e
bigDataUrl AL_H3K9ac_4.bigWig
shortLabel AL H3K9ac 4
longLabel Adult Liver H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2282 Pcnt=43 DonorID:4)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,156,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2282 Hotspot_Percentile=43 GSM=GSM621630 dateUnrestricted=2011-08-12
track BMDMSC_H3K9ac_57e
bigDataUrl BMDMSC_H3K9ac_57.bigWig
shortLabel BMDMSC H3K9ac 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4141 Pcnt=74 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,152,0
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=455103 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4141 Hotspot_Percentile=74 GSM=GSM621442 dateUnrestricted=2011-08-12
track BreMyo_H3K9ac_RM080e
bigDataUrl BreMyo_H3K9ac_RM080.bigWig
shortLabel BMC H3K9ac 80
longLabel Breast_Myoepithelial_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1622 Pcnt=26 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,148,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K9ac" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=10ul size_fraction=44-291bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signalling" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1622 Hotspot_Percentile=26 GSM=GSM613889 dateUnrestricted=2011-08-11
track CD4N_H3K9ac_TC001e
bigDataUrl CD4N_H3K9ac_TC001.bigWig
shortLabel CD4N H3K9ac 01
longLabel CD4_Naive_Primary_Cells Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2771 Pcnt=60 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,144,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive Primary Cell" markers=CD4+,CD45RA+ donor_id=TC001 donor_age=21 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=10ul chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.2771 Hotspot_Percentile=60 GSM=GSM543004 dateUnrestricted=2011-02-17
track CD8N_H3K9ac_TC001e
bigDataUrl CD8N_H3K9ac_TC001.bigWig
shortLabel CD8N H3K9ac 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1685 Pcnt=31 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,140,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" size_fraction=200-400bp chip_protocol_antibody_amount="10 ul" chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1685 Hotspot_Percentile=31 GSM=GSM613813 dateUnrestricted=2011-08-11
track CM_H3K9ac_32e
bigDataUrl CM_H3K9ac_32.bigWig
shortLabel CM H3K9ac 32
longLabel Colonic Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2838 Pcnt=63 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,136,0
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2838 Hotspot_Percentile=63 GSM=GSM621674 dateUnrestricted=2011-08-12
track DM_H3K9ac_61e
bigDataUrl DM_H3K9ac_61.bigWig
shortLabel DM H3K9ac 61
longLabel Duodenum Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1351 Pcnt=11 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,132,0
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1351 Hotspot_Percentile=11 GSM=GSM621445 dateUnrestricted=2011-08-12
track FK_H3K9ac_2676e
bigDataUrl FK_H3K9ac_2676.bigWig
shortLabel FK H3K9ac 76
longLabel Fetal Kidney H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.154 Pcnt=20 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,128,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.154 Hotspot_Percentile=20 GSM=GSM621430 dateUnrestricted=2011-08-12
track FL_H3K9ac_2727e
bigDataUrl FL_H3K9ac_2727.bigWig
shortLabel FL H3K9ac 27
longLabel Fetal Lung H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1557 Pcnt=23 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,124,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1557 Hotspot_Percentile=23 GSM=GSM621400 dateUnrestricted=2011-08-12
track H1_H3K9ac_2526e
bigDataUrl H1_H3K9ac_2526.bigWig
shortLabel H1 H3K9ac 26
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2242 Pcnt=40 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,120,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.2242 Hotspot_Percentile=40 GSM=GSM433171 dateUnrestricted=2010-05-05
track H1_H3K9ac_40e
bigDataUrl H1_H3K9ac_40.bigWig
shortLabel H1 H3K9ac 40
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2413 Pcnt=51 Library:LL240)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,116,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.2413 Hotspot_Percentile=51 GSM=GSM434785 dateUnrestricted=2010-05-03
track H1_H3K9ac_4962e
bigDataUrl H1_H3K9ac_4962.bigWig
shortLabel H1 H3K9ac 62
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1796 Pcnt=34 Library:Solexa-14962)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,112,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1796 Hotspot_Percentile=34 GSM=GSM537685 dateUnrestricted=2011-01-28
track H1_H3K9ac_68e
bigDataUrl H1_H3K9ac_68.bigWig
shortLabel H1 H3K9ac 68
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.241 Pcnt=49 Library:SAK68)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,108,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.241 Hotspot_Percentile=49 GSM=GSM605323 dateUnrestricted=2011-07-07
track H1_H3K9ac_H1EScd1_Ae
bigDataUrl H1_H3K9ac_H1EScd1_A.bigWig
shortLabel H1 H3K9ac A
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2077 Pcnt=37 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,104,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage="REMC batch1" medium="CDI protocol" sex=Male experiment_type="Histone H3K9ac" extraction_protocol=n/a extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=n/a chip_antibody=H3K9Ac chip_antibody_provider=Millipore chip_antibody_catalog=07-352 chip_antibody_lot=24661 Hotspot_Score=0.2077 Hotspot_Percentile=37 GSM=GSM410807 dateUnrestricted=2010-05-03
track MSCC_H3K9ac_hSKM1e
bigDataUrl MSCC_H3K9ac_hSKM1.bigWig
shortLabel MS H3K9ac 1
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5427 Pcnt=94 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,100,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5427 Hotspot_Percentile=94 GSM=GSM621738 dateUnrestricted=2011-08-12
track MSCC_H3K9ac_hSKM2e
bigDataUrl MSCC_H3K9ac_hSKM2.bigWig
shortLabel MS H3K9ac 2
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4984 Pcnt=83 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,96,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4984 Hotspot_Percentile=83 GSM=GSM621748 dateUnrestricted=2011-08-12
track MSCC_H3K9ac_hSKM3e
bigDataUrl MSCC_H3K9ac_hSKM3.bigWig
shortLabel MS H3K9ac 3
longLabel Muscle Satellite Cultured Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5156 Pcnt=89 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,92,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5156 Hotspot_Percentile=89 GSM=GSM621757 dateUnrestricted=2011-08-12
track PBMC_H3K9ac_TC010e
bigDataUrl PBMC_H3K9ac_TC010.bigWig
shortLabel PBM H3K9ac 10 23
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2855 Pcnt=66 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,88,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=50-372bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.2855 Hotspot_Percentile=66 GSM=GSM613879 dateUnrestricted=2011-08-11
track PBMC_H3K9ac_TC012e
bigDataUrl PBMC_H3K9ac_TC012.bigWig
shortLabel PBM H3K9ac 12 44
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1502 Pcnt=17 DonorID:TC012)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,84,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K9ac" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=92-253bp chip_antibody=H3K9ac chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9649S chip_antibody_lot=1 Hotspot_Score=0.1502 Hotspot_Percentile=17 GSM=GSM613883 dateUnrestricted=2011-08-11
track PI_H3K9ac_7_09e
bigDataUrl PI_H3K9ac_7_09.bigWig
shortLabel PI H3K9ac 27
longLabel Pancreatic Islets H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3653 Pcnt=69 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,80,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.3653 Hotspot_Percentile=69 GSM=GSM537660 dateUnrestricted=2011-01-28
track RM_H3K9ac_29e
bigDataUrl RM_H3K9ac_29.bigWig
shortLabel RM H3K9ac 29
longLabel Rectal Mucosa H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1351 Pcnt=11 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,76,0
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1351 Hotspot_Percentile=11 GSM=GSM621636 dateUnrestricted=2011-08-12
track RSM_H3K9ac_30e
bigDataUrl RSM_H3K9ac_30.bigWig
shortLabel RSM H3K9ac 30
longLabel Rectal Smooth Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1036 Pcnt=3 DonorID:30)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,72,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1036 Hotspot_Percentile=3 GSM=GSM621661 dateUnrestricted=2011-08-12
track SM_H3K9ac_19e
bigDataUrl SM_H3K9ac_19.bigWig
shortLabel SM H3K9ac 19
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4472 Pcnt=77 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,68,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4472 Hotspot_Percentile=77 GSM=GSM621688 dateUnrestricted=2011-08-12
track SM_H3K9ac_62e
bigDataUrl SM_H3K9ac_62.bigWig
shortLabel SM H3K9ac 62
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4828 Pcnt=80 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,64,0
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4828 Hotspot_Percentile=80 GSM=GSM621682 dateUnrestricted=2011-08-12
track SM_H3K9ac_63e
bigDataUrl SM_H3K9ac_63.bigWig
shortLabel SM H3K9ac 63
longLabel Skeletal Muscle H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5013 Pcnt=86 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,60,0
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Ac chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab4441 chip_antibody_provider=Abcam chip_antibody_lot=550799 experiment_type="Histone H3K9ac" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5013 Hotspot_Percentile=86 GSM=GSM621691 dateUnrestricted=2011-08-12
track iPS15b_H3K9ac_0747e
bigDataUrl iPS15b_H3K9ac_0747.bigWig
shortLabel iPS15b H3K9ac 47
longLabel iPS 15b H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1426 Pcnt=14 Library:Solexa-20747)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,56,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1426 Hotspot_Percentile=14 GSM=GSM537692 dateUnrestricted=2011-01-28
track iPS18c_H3K9ac_9756e
bigDataUrl iPS18c_H3K9ac_9756.bigWig
shortLabel iPS18c H3K9ac 56
longLabel iPS 18c H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2533 Pcnt=57 Library:Solexa-19756)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,52,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.2533 Hotspot_Percentile=57 GSM=GSM537677 dateUnrestricted=2011-01-28
track iPS20b_H3K9ac_0764e
bigDataUrl iPS20b_H3K9ac_0764.bigWig
shortLabel iPS20b H3K9ac 64
longLabel iPS 20b H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1303 Pcnt=6 Library:Solexa-20764)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,48,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1303 Hotspot_Percentile=6 GSM=GSM537689 dateUnrestricted=2011-01-28
track ESI3_H3K9ac_2682e
bigDataUrl ESI3_H3K9ac_2682.bigWig
shortLabel ESI3 H3K9ac 82
longLabel ES-I3 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2532 Pcnt=54 Library:Solexa-12682)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,44,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.2532 Hotspot_Percentile=54 GSM=GSM537624 dateUnrestricted=2011-01-28
track ESI3_H3K9ac_5383e
bigDataUrl ESI3_H3K9ac_5383.bigWig
shortLabel ESI3 H3K9ac 83
longLabel ES-I3 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.6464 Pcnt=100 Library:Solexa-15383)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,40,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=550799 Hotspot_Score=0.6464 Hotspot_Percentile=100 GSM=GSM537670 dateUnrestricted=2011-01-28
track H9_H3K9ac_SK199e
bigDataUrl H9_H3K9ac_SK199.bigWig
shortLabel H9 H3K9ac 99
longLabel H9 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.229 Pcnt=46 Library:SK199)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,36,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.229 Hotspot_Percentile=46 GSM=GSM605324 dateUnrestricted=2011-07-07
track IMR90_H3K9ac_233e
bigDataUrl IMR90_H3K9ac_233.bigWig
shortLabel IMR90 H3K9ac 33
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5371 Pcnt=91 Library:LL233)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,32,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.5371 Hotspot_Percentile=91 GSM=GSM469973 dateUnrestricted=2010-12-22
track IMR90_H3K9ac_K46e
bigDataUrl IMR90_H3K9ac_K46.bigWig
shortLabel IMR90 H3K9ac 46
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6246 Pcnt=97 Library:SK46)
type bigWig 0 90000
parent containeredacc2H3K9ac
color 0,28,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.6246 Hotspot_Percentile=97 GSM=GSM521912 dateUnrestricted=2010-12-22
track containeredacc2smRNA
container multiWig
superTrack edaccContainerbyExperiment
shortLabel smRNA Summary
longLabel EDACC Release II smRNA Summary for 2 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BrevHM_smRNA_RM035e
bigDataUrl BrevHM_smRNA_RM035.bigWig
shortLabel Bv smRNA 35
longLabel Breast vHMEC smRNA-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containeredacc2smRNA
color 0,22,173
metadata disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type=smRNA-Seq extraction_protocol="Total RNA was extracted using Trizol from Invitrogen as per manufacturer's instuctions." extraction_protocol_smrna_enrichment="The small RNA fraction was separated by electrophoresis on a Novex 10% TBE-Urea gel and the fraction between approximately 14-30nt was excised. The excisd fraction was then eluted from gel fragements, followed by EtOH precipitation and was resuspended in 6.3ul." smrna_preparation_initial_smrna_qnty="1000 ng" rna_preparation_5'_rna_adapter_sequence="5' GUUCAGAGUUCUACAGUCCGACGAUC 3'" rna_preparation_3'_rna_adapter_sequence="5' pUCGUAUGCCGUCUUCUGCUUGidT 3' (p=phosphate, idT=inverted deoxythyidine)" rna_preparation_reverse_transcription_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" rna_preparation_3'_rna_adapter_ligation_protocol="3' RNA adapter ligation was set up with 6.3ul of purified 5' ligation product, 1.2ul of 10uM 3' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion)), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). The ligation reaction was incubated at 16oC overnight." rna_preparation_5'_rna_adapter_ligation_protocol="5' RNA adapter ligation was set up with 6.2ul of purified small RNA fraction (14-30nt), 1.3ul of 5uM 5' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). Ligation reaction was incubated at 16oC overnight." rna_preparation_reverse_transcription_protocol="To 4.5ul of purified ligated RNA, 0.5ul of 100uM Small RNA RT-Primer was added and heat denatured at 70oC for 2 mins. Sample was then placed on a rack at room temperature and the following reagents were added immediately to the sample (2.0ul of 5X First Strand Buffer, 0.65ul of 10mM dNTPs (Invitrogen), 1ul of 100mM DTT (Invitrogen) and 0.5ul of RNaseOUT (40U/ul from Invitrogen). Reaction was heated at 48oC for 3mins. 1.0ul of Superscript II RT (200U/ul from Invitrogen) was added to the reaction and was incubated at 44oC for 1 hr. After 1hr of incubation, tube was placed on ice. 12ul of DEPC water was added to the first strand cDNA product to make a final total volume of approximately 20ul." library_generation_pcr_template="10ul of the first strand cDNA product was used in the PCR" library_generation_pcr_polymerase_type="Phusion DNA Polymerase (Hot Start), 2U/ul (from NEB)" library_generation_pcr_thermocycling_program="98°C for 30sec; 98°C for 10sec, 60°C for 30sec, 72°C for 15sec for 15 cycles; 72°C for 5min" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA 3'" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" library_generation_pcr_primer_conc=0.25uM library_generation_pcr_product_isolation_protocol="PCR product was separated by electrophoresis on 8% TBE Novex Gel and the PCR product between 92-125bp was excised. Product was then eluted from gel fragements, followed by EtOH precipitation" GSM=GSM543034 dateUnrestricted=2011-02-17
track H1_smRNA_vial1e
bigDataUrl H1_smRNA_vial1.bigWig
shortLabel H1 smRNA l1
longLabel H1 Cell Line smRNA-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2smRNA
color 0,1,173
metadata batch=#2 molecule= disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type=smRNA-Seq extraction_protocol="Total RNA was extracted using Trizol from Invitrogen as per manufacturer's instuctions." extraction_protocol_smrna_enrichment="The small RNA fraction was separated by electrophoresis on a Novex 10% TBE-Urea gel and the fraction between approximately 14-30nt was excised. The excisd fraction was then eluted from gel fragements, followed by EtOH precipitation and was resuspended in 6.3ul." smrna_preparation_initial_smrna_qnty="10000 ng" rna_preparation_5'_rna_adapter_sequence="5' GUUCAGAGUUCUACAGUCCGACGAUC 3'" rna_preparation_3'_rna_adapter_sequence="5' pUCGUAUGCCGUCUUCUGCUUGidT 3' (p=phosphate, idT=inverted deoxythyidine)" rna_preparation_reverse_transcription_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" rna_preparation_3'_rna_adapter_ligation_protocol="3' RNA adapter ligation was set up with 6.3ul of purified 5' ligation product, 1.2ul of 10uM 3' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion)), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). The ligation reaction was incubated at 16oC overnight." rna_preparation_5'_rna_adapter_ligation_protocol="5' RNA adapter ligation was set up with 6.2ul of purified small RNA fraction (14-30nt), 1.3ul of 5uM 5' RNA adapter, 1ul of 10x Ligation buffer, 1ul of T4 RNA Ligase (5U/ul from Ambion), and 0.5ul of Rnase OUT (40U/ul from Invitrogen). Ligation reaction was incubated at 16oC overnight." rna_preparation_reverse_transcription_protocol="To 4.5ul of purified ligated RNA, 0.5ul of 100uM Small RNA RT-Primer was added and heat denatured at 70oC for 2 mins. Sample was then placed on a rack at room temperature and the following reagents were added immediately to the sample (2.0ul of 5X First Strand Buffer, 0.65ul of 10mM dNTPs (Invitrogen), 1ul of 100mM DTT (Invitrogen) and 0.5ul of RNaseOUT (40U/ul from Invitrogen). Reaction was heated at 48oC for 3mins. 1.0ul of Superscript II RT (200U/ul from Invitrogen) was added to the reaction and was incubated at 44oC for 1 hr. After 1hr of incubation, tube was placed on ice. 12ul of DEPC water was added to the first strand cDNA product to make a final total volume of approximately 20ul." library_generation_pcr_template="10ul of the first strand cDNA product was used in the PCR" library_generation_pcr_polymerase_type="Phusion DNA Polymerase (Hot Start), 2U/ul (from NEB)" library_generation_pcr_thermocycling_program="98°C for 30sec; 98°C for 10sec, 60°C for 30sec, 72°C for 15sec for 15 cycles; 72°C for 5min" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGACAGGTTCAGAGTTCTACAGTCCGA 3'" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGA 3'" library_generation_pcr_primer_conc=0.25uM library_generation_pcr_product_isolation_protocol="PCR product was separated by electrophoresis on 8% TBE Novex Gel and the PCR product between 92-125bp was excised. Product was then eluted from gel fragements, followed by EtOH precipitation" GSM=GSM450239 dateUnrestricted=2010-10-07
track containeredacc2H2BK12ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2BK12ac Summary
longLabel EDACC Release II H2BK12ac Summary for 5 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H2BK12ac_03e
bigDataUrl H1_H2BK12ac_03.bigWig
shortLabel H1 H2BK12ac 03
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.202 Pcnt=50 Library:SAK203)
type bigWig 0 90000
parent containeredacc2H2BK12ac
color 141,224,230
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.202 Hotspot_Percentile=50 GSM=GSM605297 dateUnrestricted=2011-07-07
track H1_H2BK12ac_93e
bigDataUrl H1_H2BK12ac_93.bigWig
shortLabel H1 H2BK12ac 93
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1846 Pcnt=25 Library:YL93)
type bigWig 0 90000
parent containeredacc2H2BK12ac
color 106,224,230
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.1846 Hotspot_Percentile=25 GSM=GSM605296 dateUnrestricted=2011-07-07
track IMR90_H2BK12ac_138e
bigDataUrl IMR90_H2BK12ac_138.bigWig
shortLabel IMR90 H2BK12ac 38
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5271 Pcnt=100 Library:YL138)
type bigWig 0 90000
parent containeredacc2H2BK12ac
color 71,224,230
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.5271 Hotspot_Percentile=100 GSM=GSM521874 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_L18e
bigDataUrl IMR90_H2BK12ac_L18.bigWig
shortLabel IMR90 H2BK12ac 18
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.502 Pcnt=75 Library:YL18)
type bigWig 0 90000
parent containeredacc2H2BK12ac
color 36,224,230
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=451732 Hotspot_Score=0.502 Hotspot_Percentile=75 GSM=GSM521871 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_L68e
bigDataUrl IMR90_H2BK12ac_L68.bigWig
shortLabel IMR90 H2BK12ac 68
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.523 Pcnt=100 Library:YL68)
type bigWig 0 90000
parent containeredacc2H2BK12ac
color 1,224,230
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.523 Hotspot_Percentile=100 GSM=GSM521873 dateUnrestricted=2010-12-22
track containeredacc2Input
container multiWig
superTrack edaccContainerbyExperiment
shortLabel Input Summary
longLabel EDACC Release II Input Summary for 66 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_Input_1e
bigDataUrl ADMSC_Input_1.bigWig
shortLabel ADMSC Input 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0093 Pcnt=29 DonorID:1)
type bigWig 0 90000
parent containeredacc2Input
color 133,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0093 Hotspot_Percentile=29 GSM=GSM621443 dateUnrestricted=2011-08-12
track AK_Input_7e
bigDataUrl AK_Input_7.bigWig
shortLabel AK Input 27
longLabel Adult Kidney Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:27)
type bigWig 0 90000
parent containeredacc2Input
color 131,206,250
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 Hotspot_Percentile=17 GSM=GSM621638 dateUnrestricted=2011-08-12
track AL_Input_4e
bigDataUrl AL_Input_4.bigWig
shortLabel AL Input 4
longLabel Adult Liver Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0846 Pcnt=68 DonorID:4)
type bigWig 0 90000
parent containeredacc2Input
color 129,206,250
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0846 Hotspot_Percentile=68 GSM=GSM621629 dateUnrestricted=2011-08-12
track AN_Input_7e
bigDataUrl AN_Input_7.bigWig
shortLabel AN Input 7
longLabel Adipose Nuclei Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0063 Pcnt=21 DonorID:7)
type bigWig 0 90000
parent containeredacc2Input
color 127,206,250
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0063 Hotspot_Percentile=21 GSM=GSM621401 dateUnrestricted=2011-08-12
track BreMyo_Input_RM066e
bigDataUrl BreMyo_Input_RM066.bigWig
shortLabel BMC Input 66
longLabel Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0159 Pcnt=32 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2Input
color 125,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="ChIP-Seq Input" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher Sonic Dismembrator 550" extraction_protocol_sonication_cycles=10min chip_protocol=Input chip_protocol_chromatin_amount=1.16ug size_fraction=100-300bp Hotspot_Score=0.0159 Hotspot_Percentile=32 GSM=GSM613891 dateUnrestricted=2011-08-11
track BreMyo_Input_RM080e
bigDataUrl BreMyo_Input_RM080.bigWig
shortLabel BMC Input 80
longLabel Breast_Myoepithelial_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0094 Pcnt=30 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2Input
color 123,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="ChIP-Seq Input" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol=Input chip_protocol_chromatin_amount=2.08ug size_fraction=46-291bp Hotspot_Score=0.0094 Hotspot_Percentile=30 GSM=GSM613897 dateUnrestricted=2011-08-11
track BrevHM_Input_S1995e
bigDataUrl BrevHM_Input_S1995.bigWig
shortLabel Bv Input 35 95
longLabel Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.019 Pcnt=33 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2Input
color 121,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=25min chip_protocol=Input chip_protocol_chromatin_amount=100ng size_fraction=213-563bp Hotspot_Score=0.019 Hotspot_Percentile=33 GSM=GSM613890 dateUnrestricted=2011-08-11
track BrevHM_Input_S2620e
bigDataUrl BrevHM_Input_S2620.bigWig
shortLabel Bv Input 35 20
longLabel Breast vHMEC Histone Modification Input by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0258 Pcnt=39 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2Input
color 119,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=500ng size_fraction=39-322bp Hotspot_Score=0.0258 Hotspot_Percentile=39 GSM=GSM613892 dateUnrestricted=2011-08-11
track CD19_Input_1_08e
bigDataUrl CD19_Input_1_08.bigWig
shortLabel CD19 Input 1
longLabel CD19 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0634 Pcnt=52 DonorID:CD19_8/1/08)
type bigWig 0 90000
parent containeredacc2Input
color 117,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0634 Hotspot_Percentile=52 GSM=GSM537620 dateUnrestricted=2011-01-28
track CD34_Input_123e
bigDataUrl CD34_Input_123.bigWig
shortLabel CD34 Input 23
longLabel CD34 Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0062 Pcnt=20 DonorID:123)
type bigWig 0 90000
parent containeredacc2Input
color 115,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0062 Hotspot_Percentile=20 GSM=GSM621452 dateUnrestricted=2011-08-12
track CD34_Input_1536e
bigDataUrl CD34_Input_1536.bigWig
shortLabel MCD34 Input 36
longLabel Mobilized CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0067 Pcnt=23 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2Input
color 113,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0067 Hotspot_Percentile=23 GSM=GSM621689 dateUnrestricted=2011-08-12
track CD34_Input_9661e
bigDataUrl CD34_Input_9661.bigWig
shortLabel CD34 Input 61
longLabel CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0832 Pcnt=67 DonorID:CD34_39661)
type bigWig 0 90000
parent containeredacc2Input
color 111,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0832 Hotspot_Percentile=67 GSM=GSM486702 dateUnrestricted=2010-10-06
track CD3_Input_9661e
bigDataUrl CD3_Input_9661.bigWig
shortLabel CD3 Input 61
longLabel CD3 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0892 Pcnt=71 DonorID:CD3_39661)
type bigWig 0 90000
parent containeredacc2Input
color 109,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0892 Hotspot_Percentile=71 GSM=GSM537619 dateUnrestricted=2011-01-28
track CD4M_Input_20e
bigDataUrl CD4M_Input_20.bigWig
shortLabel CD4M Input 20
longLabel CD4 Memory Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0599 Pcnt=47 DonorID:20)
type bigWig 0 90000
parent containeredacc2Input
color 107,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type="Memory CD4" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0599 Hotspot_Percentile=47 GSM=GSM621447 dateUnrestricted=2011-08-12
track CD8N_Input_TC001e
bigDataUrl CD8N_Input_TC001.bigWig
shortLabel CD8N Input 01
longLabel CD8_Naive_Primary_Cells Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0211 Pcnt=35 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2Input
color 105,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol=Input size_fraction=200-400bp chip_protocol_chromatin_amount="1 ug" Hotspot_Score=0.0211 Hotspot_Percentile=35 GSM=GSM613816 dateUnrestricted=2011-08-11
#track CD8N_Input_TC010e
#bigDataUrl CD8N_Input_TC010.bigWig
#shortLabel CD8N Input 10
#longLabel CD8_Naive_Primary_Cells Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2181 Pcnt=92)
#type bigWig 0 90000
#parent containeredacc2Input
#color 103,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers=CD8+,CD45RA+ donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XY" parity=NA experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=450ng size_fraction=81-300bp Hotspot_Score=0.2181 Hotspot_Percentile=92 GSM=GSM613895 dateUnrestricted=
track CM_Input_32e
bigDataUrl CM_Input_32.bigWig
shortLabel CM Input 32
longLabel Colonic Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0221 Pcnt=36 DonorID:32)
type bigWig 0 90000
parent containeredacc2Input
color 101,206,250
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0221 Hotspot_Percentile=36 GSM=GSM621669 dateUnrestricted=2011-08-12
track DM_Input_61e
bigDataUrl DM_Input_61.bigWig
shortLabel DM Input 61
longLabel Duodenum Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:61)
type bigWig 0 90000
parent containeredacc2Input
color 99,206,250
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0033 Hotspot_Percentile=5 GSM=GSM621406 dateUnrestricted=2011-08-12
track FH_Input_2727e
bigDataUrl FH_Input_2727.bigWig
shortLabel FH Input 27
longLabel Fetal Heart Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0794 Pcnt=58 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2Input
color 97,206,250
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0794 Hotspot_Percentile=58 GSM=GSM621396 dateUnrestricted=2011-08-12
track H1_Input_0531e
bigDataUrl H1_Input_0531.bigWig
shortLabel H1 Input 31
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0894 Pcnt=73 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 95,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39805 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0894 Hotspot_Percentile=73 GSM=GSM433179 dateUnrestricted=2010-05-05
track H1_Input_08e
bigDataUrl H1_Input_08.bigWig
shortLabel H1 Input 08
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.083 Pcnt=65 Library:YL208)
type bigWig 0 90000
parent containeredacc2Input
color 93,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.083 Hotspot_Percentile=65 GSM=GSM605335 dateUnrestricted=2011-07-07
track H1_Input_19e
bigDataUrl H1_Input_19.bigWig
shortLabel H1 Input 19
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1569 Pcnt=83 Library:DM219)
type bigWig 0 90000
parent containeredacc2Input
color 91,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1569 Hotspot_Percentile=83 GSM=GSM605338 dateUnrestricted=2011-07-07
track H1_Input_1Ue
bigDataUrl H1_Input_1U.bigWig
shortLabel H1 Input 1U
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.187 Pcnt=88 Library:LLH1U)
type bigWig 0 90000
parent containeredacc2Input
color 89,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.187 Hotspot_Percentile=88 GSM=GSM605339 dateUnrestricted=2011-07-07
track H1_Input_2532e
bigDataUrl H1_Input_2532.bigWig
shortLabel H1 Input 32
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0809 Pcnt=61 Library:Solexa-12532)
type bigWig 0 90000
parent containeredacc2Input
color 87,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0809 Hotspot_Percentile=61 GSM=GSM537682 dateUnrestricted=2011-01-28
track H1_Input_54e
bigDataUrl H1_Input_54.bigWig
shortLabel H1 Input 54
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1195 Pcnt=79 Library:YL154)
type bigWig 0 90000
parent containeredacc2Input
color 85,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1195 Hotspot_Percentile=79 GSM=GSM605337 dateUnrestricted=2011-07-07
track H1_Input_62e
bigDataUrl H1_Input_62.bigWig
shortLabel H1 Input 62
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.0803 Pcnt=59 Library:YL262)
type bigWig 0 90000
parent containeredacc2Input
color 83,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0803 Hotspot_Percentile=59 GSM=GSM605336 dateUnrestricted=2011-07-07
track H1_Input_I1e
bigDataUrl H1_Input_I1.bigWig
shortLabel H1 Input I1
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1133 Pcnt=77 Library:LL-H1-I1)
type bigWig 0 90000
parent containeredacc2Input
color 81,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1133 Hotspot_Percentile=77 GSM=GSM605333 dateUnrestricted=2011-07-07
track H1_Input_I2e
bigDataUrl H1_Input_I2.bigWig
shortLabel H1 Input I2
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1532 Pcnt=82 Library:LL-H1-I2)
type bigWig 0 90000
parent containeredacc2Input
color 79,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Male experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1532 Hotspot_Percentile=82 GSM=GSM605334 dateUnrestricted=2011-07-07
track H1_Input_TOTALe
bigDataUrl H1_Input_TOTAL.bigWig
shortLabel H1 Input d1
longLabel H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.033 Pcnt=42 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 77,206,250
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a sex=Male batch=#1 experiment_type="ChIP-Seq Input" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol=Input chip_protocol_chromatin_amount=NA Hotspot_Score=0.033 Hotspot_Percentile=42 GSM=GSM428289 dateUnrestricted=2010-05-03
track H1_Input_TOTAL_2e
bigDataUrl H1_Input_TOTAL_2.bigWig
shortLabel H1 Input 2
longLabel H1 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1575 Pcnt=85 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 75,206,250
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="ChIP-Seq Input" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=Input chip_protocol_chromatin_amount="35.3 ug" Hotspot_Score=0.1575 Hotspot_Percentile=85 GSM=GSM450270 dateUnrestricted=2010-12-22
track MCD34_Input_1480e
bigDataUrl MCD34_Input_1480.bigWig
shortLabel MCD34 Input 80
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0022 Pcnt=2 DonorID:RO01480)
type bigWig 0 90000
parent containeredacc2Input
color 73,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0022 Hotspot_Percentile=2 GSM=GSM621456 dateUnrestricted=2011-08-12
track MCD34_Input_1549e
bigDataUrl MCD34_Input_1549.bigWig
shortLabel MCD34 Input 49
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=9 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2Input
color 71,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0042 Hotspot_Percentile=9 GSM=GSM621414 dateUnrestricted=2011-08-12
track MCD34_Input_8_09e
bigDataUrl MCD34_Input_8_09.bigWig
shortLabel MCD34 Input 28
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.082 Pcnt=64 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2Input
color 69,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.082 Hotspot_Percentile=64 GSM=GSM537662 dateUnrestricted=2011-01-28
track MCD4_Input_37e
bigDataUrl MCD4_Input_37.bigWig
shortLabel MCD4 Input 37
longLabel Mobilized_CD4_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0049 Pcnt=14 DonorID:37)
type bigWig 0 90000
parent containeredacc2Input
color 67,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD4+ passage_if_expanded=NA cell_type="Adult peripheral CD4" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=37 biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0049 Hotspot_Percentile=14 GSM=GSM621413 dateUnrestricted=2011-08-12
track MSCC_Input_hSKM1e
bigDataUrl MSCC_Input_hSKM1.bigWig
shortLabel MS Input 1
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0256 Pcnt=38 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 65,206,250
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0256 Hotspot_Percentile=38 GSM=GSM621743 dateUnrestricted=2011-08-12
track MSCC_Input_hSKM2e
bigDataUrl MSCC_Input_hSKM2.bigWig
shortLabel MS Input 2
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0303 Pcnt=41 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 63,206,250
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0303 Hotspot_Percentile=41 GSM=GSM621746 dateUnrestricted=2011-08-12
track MSCC_Input_hSKM3e
bigDataUrl MSCC_Input_hSKM3.bigWig
shortLabel MS Input 3
longLabel Muscle Satellite Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0379 Pcnt=44 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 61,206,250
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0379 Hotspot_Percentile=44 GSM=GSM621756 dateUnrestricted=2011-08-12
track PBMC_Input_HS2626e
bigDataUrl PBMC_Input_HS2626.bigWig
shortLabel PBM Input 10 26
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0434 Pcnt=45 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2Input
color 59,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=1ug size_fraction=38-269bp Hotspot_Score=0.0434 Hotspot_Percentile=45 GSM=GSM613894 dateUnrestricted=2011-08-11
track PBMC_Input_S2625e
bigDataUrl PBMC_Input_S2625.bigWig
shortLabel PBM Input 10 25
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0645 Pcnt=53 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2Input
color 57,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=1ug size_fraction=172-451bp Hotspot_Score=0.0645 Hotspot_Percentile=53 GSM=GSM613893 dateUnrestricted=2011-08-11
track PBMC_Input_TC012e
bigDataUrl PBMC_Input_TC012.bigWig
shortLabel PBM Input 12 43
longLabel Peripheral_Blood_Mononuclear_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0725 Pcnt=56 DonorID:TC012)
type bigWig 0 90000
parent containeredacc2Input
color 55,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="ChIP-Seq Input" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol=Input chip_protocol_chromatin_amount=100ng size_fraction=93-315bp Hotspot_Score=0.0725 Hotspot_Percentile=56 GSM=GSM613896 dateUnrestricted=2011-08-11
track PI_Input_7_09e
bigDataUrl PI_Input_7_09.bigWig
shortLabel PI Input 27
longLabel Pancreatic Islets Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1354 Pcnt=80 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2Input
color 53,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.1354 Hotspot_Percentile=80 GSM=GSM537659 dateUnrestricted=2011-01-28
track RM_Input_29e
bigDataUrl RM_Input_29.bigWig
shortLabel RM Input 29
longLabel Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0037 Pcnt=8 DonorID:29)
type bigWig 0 90000
parent containeredacc2Input
color 51,206,250
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0037 Hotspot_Percentile=8 GSM=GSM621647 dateUnrestricted=2011-08-12
track RM_Input_31e
bigDataUrl RM_Input_31.bigWig
shortLabel RM Input 31
longLabel Rectal Mucosa Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0034 Pcnt=6 DonorID:31)
type bigWig 0 90000
parent containeredacc2Input
color 49,206,250
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0034 Hotspot_Percentile=6 GSM=GSM621677 dateUnrestricted=2011-08-12
track RSM_Input_30e
bigDataUrl RSM_Input_30.bigWig
shortLabel RSM Input 30
longLabel Rectal Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0061 Pcnt=18 DonorID:30)
type bigWig 0 90000
parent containeredacc2Input
color 47,206,250
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0061 Hotspot_Percentile=18 GSM=GSM621657 dateUnrestricted=2011-08-12
track SM_Input_19e
bigDataUrl SM_Input_19.bigWig
shortLabel SM Input 19
longLabel Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0047 Pcnt=12 DonorID:19)
type bigWig 0 90000
parent containeredacc2Input
color 45,206,250
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0047 Hotspot_Percentile=12 GSM=GSM621641 dateUnrestricted=2011-08-12
track SM_Input_62e
bigDataUrl SM_Input_62.bigWig
shortLabel SM Input 62
longLabel Skeletal Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0033 Pcnt=5 DonorID:62)
type bigWig 0 90000
parent containeredacc2Input
color 43,206,250
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0033 Hotspot_Percentile=5 GSM=GSM621680 dateUnrestricted=2011-08-12
track SSM_Input_28e
bigDataUrl SSM_Input_28.bigWig
shortLabel SSM Input 28
longLabel Stomach Smooth Muscle Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0611 Pcnt=50 DonorID:28)
type bigWig 0 90000
parent containeredacc2Input
color 41,206,250
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0611 Hotspot_Percentile=50 GSM=GSM621652 dateUnrestricted=2011-08-12
track Th17_Input_20e
bigDataUrl Th17_Input_20.bigWig
shortLabel Th17 Input 20
longLabel Th17 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0863 Pcnt=70 DonorID:20)
type bigWig 0 90000
parent containeredacc2Input
color 39,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=Th17 donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0863 Hotspot_Percentile=70 GSM=GSM621455 dateUnrestricted=2011-08-12
track Treg_Input_20e
bigDataUrl Treg_Input_20.bigWig
shortLabel Treg Input 20
longLabel Treg Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0046 Pcnt=11 DonorID:20)
type bigWig 0 90000
parent containeredacc2Input
color 37,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0046 Hotspot_Percentile=11 GSM=GSM621453 dateUnrestricted=2011-08-12
track iPS11a_Input_1734e
bigDataUrl iPS11a_Input_1734.bigWig
shortLabel iPS11a Input 34
longLabel iPS 11a Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0606 Pcnt=48 Library:Solexa-11734)
type bigWig 0 90000
parent containeredacc2Input
color 35,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-11a lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=19 medium=KSR sex=Male batch=1/26/09 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0606 Hotspot_Percentile=48 GSM=GSM537693 dateUnrestricted=2011-01-28
track iPS15b_Input_5157e
bigDataUrl iPS15b_Input_5157.bigWig
shortLabel iPS15b Input 57
longLabel iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-15157)
type bigWig 0 90000
parent containeredacc2Input
color 33,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27.0 medium=KSR sex=Female batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537696 dateUnrestricted=2011-01-28
track iPS15b_Input__WCEe
bigDataUrl iPS15b_Input__WCE.bigWig
shortLabel iPS15b Input CE
longLabel iPS 15b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0085 Pcnt=27 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 31,206,250
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-15b differentiation_method=NA batch=hiPS-15b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0085 Hotspot_Percentile=27 GSM=GSM621444 dateUnrestricted=2011-08-12
track iPS18b_Input__WCEe
bigDataUrl iPS18b_Input__WCE.bigWig
shortLabel iPS18b Input CE
longLabel iPS 18b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1046 Pcnt=76 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 29,206,250
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-18b differentiation_method=NA batch=hiPS-18b-1 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1046 Hotspot_Percentile=76 GSM=GSM621411 dateUnrestricted=2011-08-12
track iPS18c_Input__WCEe
bigDataUrl iPS18c_Input__WCE.bigWig
shortLabel iPS18c Input CE
longLabel iPS 18c Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.006 Pcnt=17 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 27,206,250
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-18c differentiation_method=NA batch=hiPS-18c-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.006 Hotspot_Percentile=17 GSM=GSM621407 dateUnrestricted=2011-08-12
track iPS20b_Input_0232e
bigDataUrl iPS20b_Input_0232.bigWig
shortLabel iPS20b Input 32
longLabel iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.071 Pcnt=55 Library:Solexa-10232)
type bigWig 0 90000
parent containeredacc2Input
color 25,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR sex=Male batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.071 Hotspot_Percentile=55 GSM=GSM537701 dateUnrestricted=2011-01-28
track iPS20b_Input__WCEe
bigDataUrl iPS20b_Input__WCE.bigWig
shortLabel iPS20b Input CE
longLabel iPS 20b Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0083 Pcnt=26 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 23,206,250
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0083 Hotspot_Percentile=26 GSM=GSM621412 dateUnrestricted=2011-08-12
track ESI3_Input_0219e
bigDataUrl ESI3_Input_0219.bigWig
shortLabel ESI3 Input 19
longLabel ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0959 Pcnt=74 Library:Solexa-10219)
type bigWig 0 90000
parent containeredacc2Input
color 21,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0959 Hotspot_Percentile=74 GSM=GSM537647 dateUnrestricted=2011-01-28
track ESI3_Input__WCEe
bigDataUrl ESI3_Input__WCE.bigWig
shortLabel ESI3 Input CE
longLabel ES-I3 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.008 Pcnt=24 DonorID:NA)
type bigWig 0 90000
parent containeredacc2Input
color 19,206,250
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=45 line="hES I3 TESR" differentiation_method=NA batch="hES I3 TESR-1" biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.008 Hotspot_Percentile=24 GSM=GSM621386 dateUnrestricted=2011-08-12
track IMR90_Input_5I1e
bigDataUrl IMR90_Input_5I1.bigWig
shortLabel IMR90 Input 05I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2108 Pcnt=89 Library:IMR90-05-I1)
type bigWig 0 90000
parent containeredacc2Input
color 17,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2108 Hotspot_Percentile=89 GSM=GSM521930 dateUnrestricted=2010-12-22
track IMR90_Input_6I1e
bigDataUrl IMR90_Input_6I1.bigWig
shortLabel IMR90 Input 06I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2126 Pcnt=91 Library:IMR90-06-I1)
type bigWig 0 90000
parent containeredacc2Input
color 15,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2126 Hotspot_Percentile=91 GSM=GSM521931 dateUnrestricted=2010-12-22
track IMR90_Input_7I1e
bigDataUrl IMR90_Input_7I1.bigWig
shortLabel IMR90 Input 07I1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2408 Pcnt=97 Library:IMR90-07-I1)
type bigWig 0 90000
parent containeredacc2Input
color 13,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2408 Hotspot_Percentile=97 GSM=GSM521932 dateUnrestricted=2010-12-22
track IMR90_Input_KI1e
bigDataUrl IMR90_Input_KI1.bigWig
shortLabel IMR90 Input SKI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2235 Pcnt=94 Library:SK-I1)
type bigWig 0 90000
parent containeredacc2Input
color 11,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2235 Hotspot_Percentile=94 GSM=GSM521928 dateUnrestricted=2010-12-22
track IMR90_Input_KI2e
bigDataUrl IMR90_Input_KI2.bigWig
shortLabel IMR90 Input SKI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.226 Pcnt=95 Library:SK-I2)
type bigWig 0 90000
parent containeredacc2Input
color 9,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.226 Hotspot_Percentile=95 GSM=GSM521929 dateUnrestricted=2010-12-22
track IMR90_Input_KI3e
bigDataUrl IMR90_Input_KI3.bigWig
shortLabel IMR90 Input SKI3
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1603 Pcnt=86 Library:SK-I3)
type bigWig 0 90000
parent containeredacc2Input
color 7,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1603 Hotspot_Percentile=86 GSM=GSM521933 dateUnrestricted=2010-12-22
track IMR90_Input_LI1e
bigDataUrl IMR90_Input_LI1.bigWig
shortLabel IMR90 Input LLI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.244 Pcnt=100 Library:LL-I1)
type bigWig 0 90000
parent containeredacc2Input
color 5,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.244 Hotspot_Percentile=100 GSM=GSM521926 dateUnrestricted=2010-12-22
track IMR90_Input_LI2e
bigDataUrl IMR90_Input_LI2.bigWig
shortLabel IMR90 Input LLI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2434 Pcnt=98 Library:LL-I2)
type bigWig 0 90000
parent containeredacc2Input
color 3,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2434 Hotspot_Percentile=98 GSM=GSM521927 dateUnrestricted=2010-12-22
track containeredacc2H4K8ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H4K8ac Summary
longLabel EDACC Release II H4K8ac Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track IMR90_H4K8ac_142e
bigDataUrl IMR90_H4K8ac_142.bigWig
shortLabel IMR90 H4K8ac 42
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4842 Pcnt=50 Library:YL142)
type bigWig 0 90000
parent containeredacc2H4K8ac
color 113,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.4842 Hotspot_Percentile=50 GSM=GSM521923 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_K45e
bigDataUrl IMR90_H4K8ac_K45.bigWig
shortLabel IMR90 H4K8ac 45
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5364 Pcnt=100 Library:SK45)
type bigWig 0 90000
parent containeredacc2H4K8ac
color 76,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5364 Hotspot_Percentile=100 GSM=GSM521922 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_L17e
bigDataUrl IMR90_H4K8ac_L17.bigWig
shortLabel IMR90 H4K8ac 17
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5345 Pcnt=75 Library:YL17)
type bigWig 0 90000
parent containeredacc2H4K8ac
color 39,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5345 Hotspot_Percentile=75 GSM=GSM521919 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_L57e
bigDataUrl IMR90_H4K8ac_L57.bigWig
shortLabel IMR90 H4K8ac 57
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4645 Pcnt=25 Library:YL57)
type bigWig 0 90000
parent containeredacc2H4K8ac
color 2,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.4645 Hotspot_Percentile=25 GSM=GSM521921 dateUnrestricted=2010-12-22
track containeredacc2H4K91ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H4K91ac Summary
longLabel EDACC Release II H4K91ac Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H4K91ac_54e
bigDataUrl H1_H4K91ac_54.bigWig
shortLabel H1 H4K91ac 54
longLabel H1 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1945 Pcnt=33 Library:YL254)
type bigWig 0 90000
parent containeredacc2H4K91ac
color 0,100,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1945 Hotspot_Percentile=33 GSM=GSM605332 dateUnrestricted=2011-07-07
track IMR90_H4K91ac_K49e
bigDataUrl IMR90_H4K91ac_K49.bigWig
shortLabel IMR90 H4K91ac 49
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5743 Pcnt=100 Library:SK49)
type bigWig 0 90000
parent containeredacc2H4K91ac
color 0,50,150
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.5743 Hotspot_Percentile=100 GSM=GSM521925 dateUnrestricted=2010-12-22
track IMR90_H4K91ac_L08e
bigDataUrl IMR90_H4K91ac_L08.bigWig
shortLabel IMR90 H4K91ac 08
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4622 Pcnt=67 Library:YL08)
type bigWig 0 90000
parent containeredacc2H4K91ac
color 0,0,150
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.4622 Hotspot_Percentile=67 GSM=GSM521924 dateUnrestricted=2010-12-22
track containeredacc2H3K79me2
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K79me2 Summary
longLabel EDACC Release II H3K79me2 Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H3K79me2_04e
bigDataUrl H1_H3K79me2_04.bigWig
shortLabel H1 H3K79me2 04
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1514 Pcnt=50 Library:YL204)
type bigWig 0 90000
parent containeredacc2H3K79me2
color 150,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1514 Hotspot_Percentile=50 GSM=GSM605322 dateUnrestricted=2011-07-07
track H1_H3K79me2_80e
bigDataUrl H1_H3K79me2_80.bigWig
shortLabel H1 H3K79me2 80
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=25 Library:SAK80)
type bigWig 0 90000
parent containeredacc2H3K79me2
color 100,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1512 Hotspot_Percentile=25 GSM=GSM605321 dateUnrestricted=2011-07-07
track IMR90_H3K79me2_238e
bigDataUrl IMR90_H3K79me2_238.bigWig
shortLabel IMR90 H3K79me2 38
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4094 Pcnt=75 Library:LL238)
type bigWig 0 90000
parent containeredacc2H3K79me2
color 50,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4094 Hotspot_Percentile=75 GSM=GSM521909 dateUnrestricted=2010-12-22
track IMR90_H3K79me2_K43e
bigDataUrl IMR90_H3K79me2_K43.bigWig
shortLabel IMR90 H3K79me2 43
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4768 Pcnt=100 Library:SK43)
type bigWig 0 90000
parent containeredacc2H3K79me2
color 0,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4768 Hotspot_Percentile=100 GSM=GSM521911 dateUnrestricted=2010-12-22
track containeredacc2H2BK20ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H2BK20ac Summary
longLabel EDACC Release II H2BK20ac Summary for 4 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H2BK20ac_05e
bigDataUrl H1_H2BK20ac_05.bigWig
shortLabel H1 H2BK20ac 05
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=50 Library:SAK205)
type bigWig 0 90000
parent containeredacc2H2BK20ac
color 0,192,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.1512 Hotspot_Percentile=50 GSM=GSM605301 dateUnrestricted=2011-07-07
track H1_H2BK20ac_07e
bigDataUrl H1_H2BK20ac_07.bigWig
shortLabel H1 H2BK20ac 07
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.121 Pcnt=25 Library:YL207)
type bigWig 0 90000
parent containeredacc2H2BK20ac
color 0,129,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.121 Hotspot_Percentile=25 GSM=GSM605300 dateUnrestricted=2011-07-07
track IMR90_H2BK20ac_K14e
bigDataUrl IMR90_H2BK20ac_K14.bigWig
shortLabel IMR90 H2BK20ac 14
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4474 Pcnt=100 Library:SK14)
type bigWig 0 90000
parent containeredacc2H2BK20ac
color 0,66,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.4474 Hotspot_Percentile=100 GSM=GSM521880 dateUnrestricted=2010-12-22
track IMR90_H2BK20ac_L07e
bigDataUrl IMR90_H2BK20ac_L07.bigWig
shortLabel IMR90 H2BK20ac 07
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3776 Pcnt=75 Library:YL07)
type bigWig 0 90000
parent containeredacc2H2BK20ac
color 0,3,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.3776 Hotspot_Percentile=75 GSM=GSM521879 dateUnrestricted=2010-12-22
track containeredacc2H3K4ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K4ac Summary
longLabel EDACC Release II H3K4ac Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H3K4ac_07e
bigDataUrl H1_H3K4ac_07.bigWig
shortLabel H1 H3K4ac 07
longLabel H1 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1755 Pcnt=33 Library:SAK207)
type bigWig 0 90000
parent containeredacc2H3K4ac
color 170,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-539" chip_antibody_lot=26747 Hotspot_Score=0.1755 Hotspot_Percentile=33 GSM=GSM605311 dateUnrestricted=2011-07-07
track IMR90_H3K4ac_239e
bigDataUrl IMR90_H3K4ac_239.bigWig
shortLabel IMR90 H3K4ac 39
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5219 Pcnt=100 Library:LL239)
type bigWig 0 90000
parent containeredacc2H3K4ac
color 85,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.5219 Hotspot_Percentile=100 GSM=GSM521893 dateUnrestricted=2010-12-22
track IMR90_H3K4ac_K16e
bigDataUrl IMR90_H3K4ac_K16.bigWig
shortLabel IMR90 H3K4ac 16
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4939 Pcnt=67 Library:SK16)
type bigWig 0 90000
parent containeredacc2H3K4ac
color 0,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.4939 Hotspot_Percentile=67 GSM=GSM521894 dateUnrestricted=2010-12-22
track containeredacc2H4K5ac
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H4K5ac Summary
longLabel EDACC Release II H4K5ac Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_H4K5ac_23e
bigDataUrl H1_H4K5ac_23.bigWig
shortLabel H1 H4K5ac 23
longLabel H1 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3499 Pcnt=NA Library:LL323)
type bigWig 0 90000
parent containeredacc2H4K5ac
color 134,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.3499 Hotspot_Percentile=NA GSM=GSM605330 dateUnrestricted=2011-07-07
track IMR90_H4K5ac_234e
bigDataUrl IMR90_H4K5ac_234.bigWig
shortLabel IMR90 H4K5ac 34
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5581 Pcnt=100 Library:LL234)
type bigWig 0 90000
parent containeredacc2H4K5ac
color 68,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5581 Hotspot_Percentile=100 GSM=GSM469975 dateUnrestricted=2010-12-22
track IMR90_H4K5ac_K08e
bigDataUrl IMR90_H4K5ac_K08.bigWig
shortLabel IMR90 H4K5ac 08
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5026 Pcnt=75 Library:SK08)
type bigWig 0 90000
parent containeredacc2H4K5ac
color 2,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5026 Hotspot_Percentile=75 GSM=GSM521918 dateUnrestricted=2010-12-22
track containeredacc2H3K27me3
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K27me3 Summary
longLabel EDACC Release II H3K27me3 Summary for 52 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K27me3_1e
bigDataUrl ADMSC_H3K27me3_1.bigWig
shortLabel ADMSC H3K27me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0934 Pcnt=13 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 251,182,193
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0934 Hotspot_Percentile=13 GSM=GSM621420 dateUnrestricted=2011-08-12
track AL_H3K27me3_3e
bigDataUrl AL_H3K27me3_3.bigWig
shortLabel AL H3K27me3 3.0
longLabel Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3609 Pcnt=90 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 247,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1540736 Hotspot_Score=0.3609 Hotspot_Percentile=90 GSM=GSM537698 dateUnrestricted=2011-01-28
track AL_H3K27me3_5e
bigDataUrl AL_H3K27me3_5.bigWig
shortLabel AL H3K27me3 5.0
longLabel Adult Liver H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1637 Pcnt=38 DonorID:5.0)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 243,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1540736 Hotspot_Score=0.1637 Hotspot_Percentile=38 GSM=GSM537707 dateUnrestricted=2011-01-28
track BMDMSC_H3K27me3_57e
bigDataUrl BMDMSC_H3K27me3_57.bigWig
shortLabel BMDMSC H3K27me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1741 Pcnt=42 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 239,182,193
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1741 Hotspot_Percentile=42 GSM=GSM621454 dateUnrestricted=2011-08-12
track BreMyo_H3K27me3_RM066e
bigDataUrl BreMyo_H3K27me3_RM066.bigWig
shortLabel BMC H3K27me3 66
longLabel Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1583 Pcnt=37 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 235,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K27me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.33ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=NA chip_antibody=H3K27me3 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-069-050 chip_antibody_lot=A299-00241 Hotspot_Score=0.1583 Hotspot_Percentile=37 GSM=GSM613872 dateUnrestricted=2011-08-11
track BreMyo_H3K27me3_RM080e
bigDataUrl BreMyo_H3K27me3_RM080.bigWig
shortLabel BMC H3K27me3 80
longLabel Breast_Myoepithelial_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2704 Pcnt=65 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 231,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K27me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=50-276bp chip_antibody=H3K27me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb069050 chip_antibody_lot=A29900241 Hotspot_Score=0.2704 Hotspot_Percentile=65 GSM=GSM613887 dateUnrestricted=2011-08-11
track CD15_H3K27me3_23e
bigDataUrl CD15_H3K27me3_23.bigWig
shortLabel CD15 H3K27me3 23.0
longLabel CD15 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3763 Pcnt=94 DonorID:23.0)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 227,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD15 Primary Cells" markers=CD15+ donor_id=23.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.3763 Hotspot_Percentile=94 GSM=GSM537703 dateUnrestricted=2011-01-28
track CD19_H3K27me3_2_08e
bigDataUrl CD19_H3K27me3_2_08.bigWig
shortLabel CD19 H3K27me3 22
longLabel CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2421 Pcnt=56 DonorID:CD19_12/22/08)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 223,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/22/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2421 Hotspot_Percentile=56 GSM=GSM537634 dateUnrestricted=2011-01-28
track CD19_H3K27me3_6_08e
bigDataUrl CD19_H3K27me3_6_08.bigWig
shortLabel CD19 H3K27me3 26
longLabel CD19 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2152 Pcnt=48 DonorID:CD19_6/26/08)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 219,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_6/26/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27me3 chip_antibody_provider=none chip_antibody_catalog=none chip_antibody_lot=none Hotspot_Score=0.2152 Hotspot_Percentile=48 GSM=GSM537638 dateUnrestricted=2011-01-28
track CD34_H3K27me3_0_09e
bigDataUrl CD34_H3K27me3_0_09.bigWig
shortLabel CD34 H3K27me3 20
longLabel CD34 Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3021 Pcnt=79 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 215,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3021 Hotspot_Percentile=79 GSM=GSM537656 dateUnrestricted=2011-01-28
track CD34_H3K27me3_1536e
bigDataUrl CD34_H3K27me3_1536.bigWig
shortLabel MCD34 H3K27me3 36
longLabel Mobilized CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1353 Pcnt=29 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 211,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.1353 Hotspot_Percentile=29 GSM=GSM621664 dateUnrestricted=2011-08-12
track CD34_H3K27me3_9661e
bigDataUrl CD34_H3K27me3_9661.bigWig
shortLabel CD34 H3K27me3 61
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3095 Pcnt=83 DonorID:CD34_39661)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 207,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3095 Hotspot_Percentile=83 GSM=GSM486704 dateUnrestricted=2011-01-28
track CD34_H3K27me3_9804e
bigDataUrl CD34_H3K27me3_9804.bigWig
shortLabel CD34 H3K27me3 04
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=46 DonorID:CD34_39804)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 203,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.214 Hotspot_Percentile=46 GSM=GSM486706 dateUnrestricted=2011-01-28
track CD3_H3K27me3_9661e
bigDataUrl CD3_H3K27me3_9661.bigWig
shortLabel CD3 H3K27me3 61
longLabel CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3042 Pcnt=81 DonorID:CD3_39661)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 199,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1387952 Hotspot_Score=0.3042 Hotspot_Percentile=81 GSM=GSM537613 dateUnrestricted=2011-02-03
track CD3_H3K27me3_9804e
bigDataUrl CD3_H3K27me3_9804.bigWig
shortLabel CD3 H3K27me3 04
longLabel CD3 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2211 Pcnt=50 DonorID:CD3_39804)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 195,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2211 Hotspot_Percentile=50 GSM=GSM537631 dateUnrestricted=2011-01-28
track CD8N_H3K27me3_TC001e
bigDataUrl CD8N_H3K27me3_TC001.bigWig
shortLabel CD8N H3K27me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1489 Pcnt=31 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 191,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="10 ul" chip_antibody=H3K27me3 size_fraction=200-400bp chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.1489 Hotspot_Percentile=31 GSM=GSM613815 dateUnrestricted=2011-08-11
track CM_H3K27me3_32e
bigDataUrl CM_H3K27me3_32.bigWig
shortLabel CM H3K27me3 32
longLabel Colonic Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1847 Pcnt=44 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 187,182,193
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1847 Hotspot_Percentile=44 GSM=GSM621673 dateUnrestricted=2011-08-12
track DM_H3K27me3_61e
bigDataUrl DM_H3K27me3_61.bigWig
shortLabel DM H3K27me3 61
longLabel Duodenum Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0622 Pcnt=4 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 183,182,193
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0622 Hotspot_Percentile=4 GSM=GSM621460 dateUnrestricted=2011-08-12
track FB_H3K27me3_2510e
bigDataUrl FB_H3K27me3_2510.bigWig
shortLabel FB H3K27me3 10
longLabel Fetal Brain H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0944 Pcnt=15 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 179,182,193
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0944 Hotspot_Percentile=15 GSM=GSM621393 dateUnrestricted=2011-08-12
track FH_H3K27me3_2727e
bigDataUrl FH_H3K27me3_2727.bigWig
shortLabel FH H3K27me3 27
longLabel Fetal Heart H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1324 Pcnt=27 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 175,182,193
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1324 Hotspot_Percentile=27 GSM=GSM621450 dateUnrestricted=2011-08-12
track FK_H3K27me3_2676e
bigDataUrl FK_H3K27me3_2676.bigWig
shortLabel FK H3K27me3 76
longLabel Fetal Kidney H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0827 Pcnt=10 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 171,182,193
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0827 Hotspot_Percentile=10 GSM=GSM621424 dateUnrestricted=2011-08-12
track FL_H3K27me3_2727e
bigDataUrl FL_H3K27me3_2727.bigWig
shortLabel FL H3K27me3 27
longLabel Fetal Lung H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1037 Pcnt=17 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 167,182,193
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1037 Hotspot_Percentile=17 GSM=GSM621390 dateUnrestricted=2011-08-12
track H1_H3K27me3_14e
bigDataUrl H1_H3K27me3_14.bigWig
shortLabel H1 H3K27me3 14
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.497 Pcnt=100 Library:LL314)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 163,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.497 Hotspot_Percentile=100 GSM=GSM466734 dateUnrestricted=2010-10-07
track H1_H3K27me3_2523e
bigDataUrl H1_H3K27me3_2523.bigWig
shortLabel H1 H3K27me3 23
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3386 Pcnt=87 Library:Solexa-12523)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 159,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3386 Hotspot_Percentile=87 GSM=GSM537683 dateUnrestricted=2011-01-28
track H1_H3K27me3_41e
bigDataUrl H1_H3K27me3_41.bigWig
shortLabel H1 H3K27me3 41
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3607 Pcnt=88 Library:LL241)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 155,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3607 Hotspot_Percentile=88 GSM=GSM434776 dateUnrestricted=2010-05-03
track H1_H3K27me3_8039e
bigDataUrl H1_H3K27me3_8039.bigWig
shortLabel H1 H3K27me3 39
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2783 Pcnt=71 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 151,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1387952 Hotspot_Score=0.2783 Hotspot_Percentile=71 GSM=GSM433167 dateUnrestricted=2010-05-05
track H1_H3K27me3_95e
bigDataUrl H1_H3K27me3_95.bigWig
shortLabel H1 H3K27me3 95
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=85 Library:YL95)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 147,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3196 Hotspot_Percentile=85 GSM=GSM605308 dateUnrestricted=2011-07-07
track H1_H3K27me3_H1EScd1_Ae
bigDataUrl H1_H3K27me3_H1EScd1_A.bigWig
shortLabel H1 H3K27me3 A
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2469 Pcnt=58 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 143,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male batch=#1 experiment_type="Histone H3K27me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=30uL chip_protocol_antibody_amount=NA chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733 chip_antibody_lot=1 Hotspot_Score=0.2469 Hotspot_Percentile=58 GSM=GSM428295 dateUnrestricted=2010-05-03
track MCD34_H3K27me3_1549e
bigDataUrl MCD34_H3K27me3_1549.bigWig
shortLabel MCD34 H3K27me3 49
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2998 Pcnt=77 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 139,182,193
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2998 Hotspot_Percentile=77 GSM=GSM621431 dateUnrestricted=2011-08-12
track MCD34_H3K27me3_8_09e
bigDataUrl MCD34_H3K27me3_8_09.bigWig
shortLabel MCD34 H3K27me3 28
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2825 Pcnt=73 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 135,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2825 Hotspot_Percentile=73 GSM=GSM537649 dateUnrestricted=2011-01-28
track MSCC_H3K27me3_hSKM1e
bigDataUrl MSCC_H3K27me3_hSKM1.bigWig
shortLabel MS H3K27me3 1
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1512 Pcnt=33 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 131,182,193
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1512 Hotspot_Percentile=33 GSM=GSM621740 dateUnrestricted=2011-08-12
track MSCC_H3K27me3_hSKM2e
bigDataUrl MSCC_H3K27me3_hSKM2.bigWig
shortLabel MS H3K27me3 2
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.113 Pcnt=21 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 127,182,193
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.113 Hotspot_Percentile=21 GSM=GSM621751 dateUnrestricted=2011-08-12
track MSCC_H3K27me3_hSKM3e
bigDataUrl MSCC_H3K27me3_hSKM3.bigWig
shortLabel MS H3K27me3 3
longLabel Muscle Satellite Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.173 Pcnt=40 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 123,182,193
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.173 Hotspot_Percentile=40 GSM=GSM621755 dateUnrestricted=2011-08-12
track PBMC_H3K27me3_TC010e
bigDataUrl PBMC_H3K27me3_TC010.bigWig
shortLabel PBM H3K27me3 10 21
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2764 Pcnt=69 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 119,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K27me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=4ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=271-517bp chip_antibody=H3K27me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9733S chip_antibody_lot=2 Hotspot_Score=0.2764 Hotspot_Percentile=69 GSM=GSM613877 dateUnrestricted=2011-08-11
track PI_H3K27me3_7_09e
bigDataUrl PI_H3K27me3_7_09.bigWig
shortLabel PI H3K27me3 27
longLabel Pancreatic Islets H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2476 Pcnt=60 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 115,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=CS200603 chip_antibody_lot=DAM1499359 Hotspot_Score=0.2476 Hotspot_Percentile=60 GSM=GSM537658 dateUnrestricted=2011-01-28
track RM_H3K27me3_29e
bigDataUrl RM_H3K27me3_29.bigWig
shortLabel RM H3K27me3 29
longLabel Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0651 Pcnt=6 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 111,182,193
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0651 Hotspot_Percentile=6 GSM=GSM621650 dateUnrestricted=2011-08-12
track RM_H3K27me3_31e
bigDataUrl RM_H3K27me3_31.bigWig
shortLabel RM H3K27me3 31
longLabel Rectal Mucosa H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0572 Pcnt=2 DonorID:31)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 107,182,193
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0572 Hotspot_Percentile=2 GSM=GSM621676 dateUnrestricted=2011-08-12
track RSM_H3K27me3_30e
bigDataUrl RSM_H3K27me3_30.bigWig
shortLabel RSM H3K27me3 30
longLabel Rectal Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0781 Pcnt=8 DonorID:30)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 103,182,193
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0781 Hotspot_Percentile=8 GSM=GSM621655 dateUnrestricted=2011-08-12
track SM_H3K27me3_19e
bigDataUrl SM_H3K27me3_19.bigWig
shortLabel SM H3K27me3 19
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1542 Pcnt=35 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 99,182,193
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1542 Hotspot_Percentile=35 GSM=GSM621653 dateUnrestricted=2011-08-12
track SM_H3K27me3_62e
bigDataUrl SM_H3K27me3_62.bigWig
shortLabel SM H3K27me3 62
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0918 Pcnt=12 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 95,182,193
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0918 Hotspot_Percentile=12 GSM=GSM621683 dateUnrestricted=2011-08-12
track SM_H3K27me3_63e
bigDataUrl SM_H3K27me3_63.bigWig
shortLabel SM H3K27me3 63
longLabel Skeletal Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1189 Pcnt=23 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 91,182,193
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1189 Hotspot_Percentile=23 GSM=GSM621692 dateUnrestricted=2011-08-12
track SSM_H3K27me3_28e
bigDataUrl SSM_H3K27me3_28.bigWig
shortLabel SSM H3K27me3 28
longLabel Stomach Smooth Muscle H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1122 Pcnt=19 DonorID:28)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 87,182,193
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1122 Hotspot_Percentile=19 GSM=GSM621635 dateUnrestricted=2011-08-12
track Treg_H3K27me3_20e
bigDataUrl Treg_H3K27me3_20.bigWig
shortLabel Treg H3K27me3 20
longLabel Treg Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1272 Pcnt=25 DonorID:20)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 83,182,193
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1272 Hotspot_Percentile=25 GSM=GSM621448 dateUnrestricted=2011-08-12
track iPS15b_H3K27me3_7Me3e
bigDataUrl iPS15b_H3K27me3_7Me3.bigWig
shortLabel iPS15b H3K27me3 e3
longLabel iPS 15b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2758 Pcnt=67 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 79,182,193
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=27 line=hiPS-15b differentiation_method=NA batch=hiPS-15b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2758 Hotspot_Percentile=67 GSM=GSM621433 dateUnrestricted=2011-08-12
track iPS18c_H3K27me3_9791e
bigDataUrl iPS18c_H3K27me3_9791.bigWig
shortLabel iPS18c H3K27me3 91
longLabel iPS 18c H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4168 Pcnt=98 Library:Solexa-19791)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 75,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.4168 Hotspot_Percentile=98 GSM=GSM537674 dateUnrestricted=2011-01-28
track iPS20b_H3K27me3_5159e
bigDataUrl iPS20b_H3K27me3_5159.bigWig
shortLabel iPS20b H3K27me3 59
longLabel iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2299 Pcnt=52 Library:Solexa-15159)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 71,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2299 Hotspot_Percentile=52 GSM=GSM537700 dateUnrestricted=2011-01-28
track iPS20b_H3K27me3_7Me3e
bigDataUrl iPS20b_H3K27me3_7Me3.bigWig
shortLabel iPS20b H3K27me3 e3
longLabel iPS 20b H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2568 Pcnt=62 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 67,182,193
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1514011 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2568 Hotspot_Percentile=62 GSM=GSM621416 dateUnrestricted=2011-08-12
track ESI3_H3K27me3_2678e
bigDataUrl ESI3_H3K27me3_2678.bigWig
shortLabel ESI3 H3K27me3 78
longLabel ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2653 Pcnt=63 Library:Solexa-12678)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 63,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2653 Hotspot_Percentile=63 GSM=GSM537627 dateUnrestricted=2011-01-28
track ESI3_H3K27me3_5380e
bigDataUrl ESI3_H3K27me3_5380.bigWig
shortLabel ESI3 H3K27me3 80
longLabel ES-I3 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3761 Pcnt=92 Library:Solexa-10213/Solexa-15380)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 59,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3761 Hotspot_Percentile=92 GSM=GSM537648 dateUnrestricted=2011-02-03
track ESWA7_H3K27me3_2609e
bigDataUrl ESWA7_H3K27me3_2609.bigWig
shortLabel ESWA7 H3K27me3 09
longLabel ES-WA7 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2923 Pcnt=75 Library:Solexa-12609)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 55,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2923 Hotspot_Percentile=75 GSM=GSM537657 dateUnrestricted=2011-01-28
track IMR90_H3K27me3_223e
bigDataUrl IMR90_H3K27me3_223.bigWig
shortLabel IMR90 H3K27me3 23
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.386 Pcnt=96 Library:LL223)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 51,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.386 Hotspot_Percentile=96 GSM=GSM469968 dateUnrestricted=2010-10-07
track IMR90_H3K27me3_K05e
bigDataUrl IMR90_H3K27me3_K05.bigWig
shortLabel IMR90 H3K27me3 05
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2404 Pcnt=54 Library:SK05)
type bigWig 0 90000
parent containeredacc2H3K27me3
color 47,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2404 Hotspot_Percentile=54 GSM=GSM521889 dateUnrestricted=2010-12-22
track containeredacc2H3K36me3
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K36me3 Summary
longLabel EDACC Release II H3K36me3 Summary for 54 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K36me3_1e
bigDataUrl ADMSC_H3K36me3_1.bigWig
shortLabel ADMSC H3K36me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2387 Pcnt=42 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,191,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2387 Hotspot_Percentile=42 GSM=GSM621446 dateUnrestricted=2011-08-12
track AK_H3K36me3_7e
bigDataUrl AK_H3K36me3_7.bigWig
shortLabel AK H3K36me3 27
longLabel Adult Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1515 Pcnt=11 DonorID:27)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,188,0
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1515 Hotspot_Percentile=11 GSM=GSM621634 dateUnrestricted=2011-08-12
track AL_H3K36me3_3e
bigDataUrl AL_H3K36me3_3.bigWig
shortLabel AL H3K36me3 3.0
longLabel Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2812 Pcnt=57 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,185,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.2812 Hotspot_Percentile=57 GSM=GSM537699 dateUnrestricted=2011-01-28
track AL_H3K36me3_5e
bigDataUrl AL_H3K36me3_5.bigWig
shortLabel AL H3K36me3 5.0
longLabel Adult Liver H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2738 Pcnt=53 DonorID:5.0)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,182,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.2738 Hotspot_Percentile=53 GSM=GSM537708 dateUnrestricted=2011-01-28
track AN_H3K36me3_7e
bigDataUrl AN_H3K36me3_7.bigWig
shortLabel AN H3K36me3 7
longLabel Adipose Nuclei H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3075 Pcnt=64 DonorID:7)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,179,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3075 Hotspot_Percentile=64 GSM=GSM621461 dateUnrestricted=2011-08-12
track BMDMSC_H3K36me3_57e
bigDataUrl BMDMSC_H3K36me3_57.bigWig
shortLabel BMDMSC H3K36me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3677 Pcnt=81 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,176,0
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3677 Hotspot_Percentile=81 GSM=GSM621419 dateUnrestricted=2011-08-12
track BreMyo_H3K36me3_RM066e
bigDataUrl BreMyo_H3K36me3_RM066.bigWig
shortLabel BMC H3K36me3 66
longLabel Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2882 Pcnt=60 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,173,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.3ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=6.25ul size_fraction=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050-100 chip_antibody_lot=134025 Hotspot_Score=0.2882 Hotspot_Percentile=60 GSM=GSM613873 dateUnrestricted=2011-08-11
track BreMyo_H3K36me3_RM080e
bigDataUrl BreMyo_H3K36me3_RM080.bigWig
shortLabel BMC H3K36me3 80
longLabel Breast_Myoepithelial_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.324 Pcnt=72 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,170,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K36me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=2.5ug size_fraction=37-266bp chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=134025 Hotspot_Score=0.324 Hotspot_Percentile=72 GSM=GSM613888 dateUnrestricted=2011-08-11
track CD19_H3K36me3_1_08e
bigDataUrl CD19_H3K36me3_1_08.bigWig
shortLabel CD19 H3K36me3 1
longLabel CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3103 Pcnt=66 DonorID:CD19_8/1/08)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,167,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=761748 Hotspot_Score=0.3103 Hotspot_Percentile=66 GSM=GSM537621 dateUnrestricted=2011-01-28
track CD19_H3K36me3_9_08e
bigDataUrl CD19_H3K36me3_9_08.bigWig
shortLabel CD19 H3K36me3 29
longLabel CD19 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3741 Pcnt=83 DonorID:CD19_12/29/08)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,164,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/29/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3741 Hotspot_Percentile=83 GSM=GSM537630 dateUnrestricted=2011-01-28
track CD34_H3K36me3_0_09e
bigDataUrl CD34_H3K36me3_0_09.bigWig
shortLabel CD34 H3K36me3 20
longLabel CD34 Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3809 Pcnt=85 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,161,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3809 Hotspot_Percentile=85 GSM=GSM537655 dateUnrestricted=2011-01-28
track CD34_H3K36me3_1536e
bigDataUrl CD34_H3K36me3_1536.bigWig
shortLabel MCD34 H3K36me3 36
longLabel Mobilized CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1295 Pcnt=8 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,158,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1295 Hotspot_Percentile=8 GSM=GSM621666 dateUnrestricted=2011-08-12
track CD34_H3K36me3_9661e
bigDataUrl CD34_H3K36me3_9661.bigWig
shortLabel CD34 H3K36me3 61
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3891 Pcnt=87 DonorID:CD34_39661)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,155,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3891 Hotspot_Percentile=87 GSM=GSM486705 dateUnrestricted=2010-10-06
track CD34_H3K36me3_9811e
bigDataUrl CD34_H3K36me3_9811.bigWig
shortLabel CD34 H3K36me3 11
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3251 Pcnt=74 DonorID:CD34_39811)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,152,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3251 Hotspot_Percentile=74 GSM=GSM486714 dateUnrestricted=2010-10-06
track CD3_H3K36me3_9661e
bigDataUrl CD3_H3K36me3_9661.bigWig
shortLabel CD3 H3K36me3 61
longLabel CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2994 Pcnt=62 DonorID:CD3_39661)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,149,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2994 Hotspot_Percentile=62 GSM=GSM537612 dateUnrestricted=2011-02-03
track CD3_H3K36me3_9804e
bigDataUrl CD3_H3K36me3_9804.bigWig
shortLabel CD3 H3K36me3 04
longLabel CD3 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4455 Pcnt=92 DonorID:CD3_39804)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,146,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.4455 Hotspot_Percentile=92 GSM=GSM537666 dateUnrestricted=2011-01-28
track CD4N_H3K36me3_TC001e
bigDataUrl CD4N_H3K36me3_TC001.bigWig
shortLabel CD4N H3K36me3 01
longLabel CD4_Naive_Primary_Cells Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3205 Pcnt=70 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,143,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive Primary Cell" markers=CD4+,CD45RA+ donor_id=TC001 donor_age=21 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=2ug chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=395432 Hotspot_Score=0.3205 Hotspot_Percentile=70 GSM=GSM543035 dateUnrestricted=2011-02-17
track CM_H3K36me3_32e
bigDataUrl CM_H3K36me3_32.bigWig
shortLabel CM H3K36me3 32
longLabel Colonic Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2745 Pcnt=55 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,140,0
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2745 Hotspot_Percentile=55 GSM=GSM621672 dateUnrestricted=2011-08-12
track DM_H3K36me3_61e
bigDataUrl DM_H3K36me3_61.bigWig
shortLabel DM H3K36me3 61
longLabel Duodenum Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2461 Pcnt=47 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,137,0
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2461 Hotspot_Percentile=47 GSM=GSM621421 dateUnrestricted=2011-08-12
track FB_H3K36me3_2510e
bigDataUrl FB_H3K36me3_2510.bigWig
shortLabel FB H3K36me3 10
longLabel Fetal Brain H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0753 Pcnt=2 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,134,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0753 Hotspot_Percentile=2 GSM=GSM621410 dateUnrestricted=2011-08-12
track FH_H3K36me3_2727e
bigDataUrl FH_H3K36me3_2727.bigWig
shortLabel FH H3K36me3 27
longLabel Fetal Heart H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.107 Pcnt=4 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,131,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.107 Hotspot_Percentile=4 GSM=GSM621392 dateUnrestricted=2011-08-12
track FK_H3K36me3_2676e
bigDataUrl FK_H3K36me3_2676.bigWig
shortLabel FK H3K36me3 76
longLabel Fetal Kidney H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1113 Pcnt=6 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,128,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1113 Hotspot_Percentile=6 GSM=GSM621415 dateUnrestricted=2011-08-12
track FL_H3K36me3_2727e
bigDataUrl FL_H3K36me3_2727.bigWig
shortLabel FL H3K36me3 27
longLabel Fetal Lung H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1924 Pcnt=25 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,125,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1924 Hotspot_Percentile=25 GSM=GSM621387 dateUnrestricted=2011-08-12
track H1_H3K36me3_20e
bigDataUrl H1_H3K36me3_20.bigWig
shortLabel H1 H3K36me3 20
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3294 Pcnt=75 Library:LL220)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,122,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.3294 Hotspot_Percentile=75 GSM=GSM409312 dateUnrestricted=2010-05-03
track H1_H3K36me3_2524e
bigDataUrl H1_H3K36me3_2524.bigWig
shortLabel H1 H3K36me3 24
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1645 Pcnt=19 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,119,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.1645 Hotspot_Percentile=19 GSM=GSM433176 dateUnrestricted=2010-05-05
track H1_H3K36me3_4961e
bigDataUrl H1_H3K36me3_4961.bigWig
shortLabel H1 H3K36me3 61
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-14961)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,116,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537684 dateUnrestricted=2011-01-28
track H1_H3K36me3_60e
bigDataUrl H1_H3K36me3_60.bigWig
shortLabel H1 H3K36me3 60
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4284 Pcnt=91 Library:LL160)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,113,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4284 Hotspot_Percentile=91 GSM=GSM466737 dateUnrestricted=2010-10-07
track H1_H3K36me3_70e
bigDataUrl H1_H3K36me3_70.bigWig
shortLabel H1 H3K36me3 70
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2825 Pcnt=58 Library:SAK70)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,110,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707948 Hotspot_Score=0.2825 Hotspot_Percentile=58 GSM=GSM605309 dateUnrestricted=2011-07-07
track H1_H3K36me3_H1EScd1_Ae
bigDataUrl H1_H3K36me3_H1EScd1_A.bigWig
shortLabel H1 H3K36me3 A
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.245 Pcnt=45 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,107,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male batch=#1 experiment_type="Histone H3K36me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=32.7ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=30uL chip_protocol_antibody_amount=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=NA Hotspot_Score=0.245 Hotspot_Percentile=45 GSM=GSM428296 dateUnrestricted=2010-05-03
track H1_H3K36me3_H1EScd2_Be
bigDataUrl H1_H3K36me3_H1EScd2_B.bigWig
shortLabel H1 H3K36me3 B
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3604 Pcnt=79 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,104,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K36me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=395432 Hotspot_Score=0.3604 Hotspot_Percentile=79 GSM=GSM450268 dateUnrestricted=2010-10-07
track MCD34_H3K36me3_1480e
bigDataUrl MCD34_H3K36me3_1480.bigWig
shortLabel MCD34 H3K36me3 80
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1771 Pcnt=23 DonorID:RO01480)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,101,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1771 Hotspot_Percentile=23 GSM=GSM621459 dateUnrestricted=2011-08-12
track MCD34_H3K36me3_8_09e
bigDataUrl MCD34_H3K36me3_8_09.bigWig
shortLabel MCD34 H3K36me3 28
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4509 Pcnt=96 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,98,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.4509 Hotspot_Percentile=96 GSM=GSM537651 dateUnrestricted=2011-01-28
track MSCC_H3K36me3_hSKM1e
bigDataUrl MSCC_H3K36me3_hSKM1.bigWig
shortLabel MS H3K36me3 1
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1615 Pcnt=17 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,95,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1615 Hotspot_Percentile=17 GSM=GSM621739 dateUnrestricted=2011-08-12
track MSCC_H3K36me3_hSKM2e
bigDataUrl MSCC_H3K36me3_hSKM2.bigWig
shortLabel MS H3K36me3 2
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1966 Pcnt=28 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,92,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1966 Hotspot_Percentile=28 GSM=GSM621749 dateUnrestricted=2011-08-12
track MSCC_H3K36me3_hSKM3e
bigDataUrl MSCC_H3K36me3_hSKM3.bigWig
shortLabel MS H3K36me3 3
longLabel Muscle Satellite Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1494 Pcnt=9 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,89,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=499302 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1494 Hotspot_Percentile=9 GSM=GSM621754 dateUnrestricted=2011-08-12
track PBMC_H3K36me3_TC010e
bigDataUrl PBMC_H3K36me3_TC010.bigWig
shortLabel PBM H3K36me3 10 24
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4862 Pcnt=100 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,86,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K36me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=73-372bp chip_antibody=H3K36me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9763S chip_antibody_lot=1 Hotspot_Score=0.4862 Hotspot_Percentile=100 GSM=GSM613880 dateUnrestricted=2011-08-11
track PI_H3K36me3_7_09e
bigDataUrl PI_H3K36me3_7_09.bigWig
shortLabel PI H3K36me3 27
longLabel Pancreatic Islets H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.27 Pcnt=49 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,83,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=490367 Hotspot_Score=0.27 Hotspot_Percentile=49 GSM=GSM537661 dateUnrestricted=2011-01-28
track RM_H3K36me3_29e
bigDataUrl RM_H3K36me3_29.bigWig
shortLabel RM H3K36me3 29
longLabel Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2316 Pcnt=36 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,80,0
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2316 Hotspot_Percentile=36 GSM=GSM621646 dateUnrestricted=2011-08-12
track RM_H3K36me3_31e
bigDataUrl RM_H3K36me3_31.bigWig
shortLabel RM H3K36me3 31
longLabel Rectal Mucosa H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1942 Pcnt=26 DonorID:31)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,77,0
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1942 Hotspot_Percentile=26 GSM=GSM621687 dateUnrestricted=2011-08-12
track RSM_H3K36me3_30e
bigDataUrl RSM_H3K36me3_30.bigWig
shortLabel RSM H3K36me3 30
longLabel Rectal Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1552 Pcnt=15 DonorID:30)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,74,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1552 Hotspot_Percentile=15 GSM=GSM621656 dateUnrestricted=2011-08-12
track SM_H3K36me3_19e
bigDataUrl SM_H3K36me3_19.bigWig
shortLabel SM H3K36me3 19
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2706 Pcnt=51 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,71,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2706 Hotspot_Percentile=51 GSM=GSM621644 dateUnrestricted=2011-08-12
track SM_H3K36me3_62e
bigDataUrl SM_H3K36me3_62.bigWig
shortLabel SM H3K36me3 62
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2021 Pcnt=30 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,68,0
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2021 Hotspot_Percentile=30 GSM=GSM621684 dateUnrestricted=2011-08-12
track SM_H3K36me3_63e
bigDataUrl SM_H3K36me3_63.bigWig
shortLabel SM H3K36me3 63
longLabel Skeletal Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1734 Pcnt=21 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,65,0
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1734 Hotspot_Percentile=21 GSM=GSM621693 dateUnrestricted=2011-08-12
track SSM_H3K36me3_28e
bigDataUrl SSM_H3K36me3_28.bigWig
shortLabel SSM H3K36me3 28
longLabel Stomach Smooth Muscle H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2366 Pcnt=40 DonorID:28)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,62,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=136353 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2366 Hotspot_Percentile=40 GSM=GSM621649 dateUnrestricted=2011-08-12
track Treg_H3K36me3_20e
bigDataUrl Treg_H3K36me3_20.bigWig
shortLabel Treg H3K36me3 20
longLabel Treg Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4144 Pcnt=89 DonorID:20)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,59,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4144 Hotspot_Percentile=89 GSM=GSM621449 dateUnrestricted=2011-08-12
track iPS15b_H3K36me3_0749e
bigDataUrl iPS15b_H3K36me3_0749.bigWig
shortLabel iPS15b H3K36me3 49
longLabel iPS 15b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2221 Pcnt=32 Library:Solexa-20749)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,56,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.2221 Hotspot_Percentile=32 GSM=GSM537690 dateUnrestricted=2011-01-28
track iPS18c_H3K36me3_9808e
bigDataUrl iPS18c_H3K36me3_9808.bigWig
shortLabel iPS18c H3K36me3 08
longLabel iPS 18c H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3174 Pcnt=68 Library:Solexa-19808)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,53,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.3174 Hotspot_Percentile=68 GSM=GSM537675 dateUnrestricted=2011-01-28
track iPS20b_H3K36me3_0763e
bigDataUrl iPS20b_H3K36me3_0763.bigWig
shortLabel iPS20b H3K36me3 63
longLabel iPS 20b H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2405 Pcnt=43 Library:Solexa-20763)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,50,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.2405 Hotspot_Percentile=43 GSM=GSM537704 dateUnrestricted=2011-01-28
track ESI3_H3K36me3_5381e
bigDataUrl ESI3_H3K36me3_5381.bigWig
shortLabel ESI3 H3K36me3 81
longLabel ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2282 Pcnt=34 Library:Solexa-15381)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,47,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2282 Hotspot_Percentile=34 GSM=GSM537669 dateUnrestricted=2011-01-28
track ESI3_H3K36me3_6493e
bigDataUrl ESI3_H3K36me3_6493.bigWig
shortLabel ESI3 H3K36me3 93
longLabel ES-I3 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2333 Pcnt=38 Library:Solexa-16493)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,44,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.2333 Hotspot_Percentile=38 GSM=GSM537672 dateUnrestricted=2011-01-28
track ESWA7_H3K36me3_2610e
bigDataUrl ESWA7_H3K36me3_2610.bigWig
shortLabel ESWA7 H3K36me3 10
longLabel ES-WA7 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1545 Pcnt=13 Library:Solexa-12610)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,41,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.1545 Hotspot_Percentile=13 GSM=GSM537640 dateUnrestricted=2011-01-28
track H9_H3K36me3_SK102e
bigDataUrl H9_H3K36me3_SK102.bigWig
shortLabel H9 H3K36me3 02
longLabel H9 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3335 Pcnt=77 Library:SK102)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,38,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.3335 Hotspot_Percentile=77 GSM=GSM605310 dateUnrestricted=2011-07-07
track IMR90_H3K36me3_225e
bigDataUrl IMR90_H3K36me3_225.bigWig
shortLabel IMR90 H3K36me3 25
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4615 Pcnt=98 Library:LL225)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,35,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4615 Hotspot_Percentile=98 GSM=GSM521890 dateUnrestricted=2010-12-22
track IMR90_H3K36me3_L67e
bigDataUrl IMR90_H3K36me3_L67.bigWig
shortLabel IMR90 H3K36me3 67
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4485 Pcnt=94 Library:YL67)
type bigWig 0 90000
parent containeredacc2H3K36me3
color 0,32,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.4485 Hotspot_Percentile=94 GSM=GSM521892 dateUnrestricted=2010-12-22
track containeredacc2H3K4me1
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K4me1 Summary
longLabel EDACC Release II H3K4me1 Summary for 43 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K4me1_1e
bigDataUrl ADMSC_H3K4me1_1.bigWig
shortLabel ADMSC H3K4me1 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6144 Pcnt=98 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,245,66
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6144 Hotspot_Percentile=98 GSM=GSM621418 dateUnrestricted=2011-08-12
track AL_H3K4me1_3e
bigDataUrl AL_H3K4me1_3.bigWig
shortLabel AL H3K4me1 3.0
longLabel Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4319 Pcnt=72 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,240,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.4319 Hotspot_Percentile=72 GSM=GSM537706 dateUnrestricted=2011-01-28
track AL_H3K4me1_5e
bigDataUrl AL_H3K4me1_5.bigWig
shortLabel AL H3K4me1 5
longLabel Adult Liver H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3989 Pcnt=60 DonorID:5)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,235,66
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=5 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3989 Hotspot_Percentile=60 GSM=GSM621654 dateUnrestricted=2011-08-12
track AN_H3K4me1_7e
bigDataUrl AN_H3K4me1_7.bigWig
shortLabel AN H3K4me1 7
longLabel Adipose Nuclei H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0885 Pcnt=2 DonorID:7)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,230,66
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0885 Hotspot_Percentile=2 GSM=GSM621425 dateUnrestricted=2011-08-12
track BMDMSC_H3K4me1_57e
bigDataUrl BMDMSC_H3K4me1_57.bigWig
shortLabel BMDMSC H3K4me1 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6001 Pcnt=95 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,225,66
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6001 Hotspot_Percentile=95 GSM=GSM621402 dateUnrestricted=2011-08-12
track BreMyo_H3K4me1_RM066e
bigDataUrl BreMyo_H3K4me1_RM066.bigWig
shortLabel BMC H3K4me1 66
longLabel Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2918 Pcnt=28 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,220,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=2ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=NA chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-011 Hotspot_Score=0.2918 Hotspot_Percentile=28 GSM=GSM613870 dateUnrestricted=2011-08-11
track BreMyo_H3K4me1_RM080e
bigDataUrl BreMyo_H3K4me1_RM080.bigWig
shortLabel BMC H3K4me1 80
longLabel Breast_Myoepithelial_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3773 Pcnt=51 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,215,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K4me1" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=3.75ug size_fraction=59-295bp chip_antibody=H3K4me1 chip_antibody_provider=diagenode chip_antibody_catalog=pAb037050 chip_antibody_lot=A3990011 Hotspot_Score=0.3773 Hotspot_Percentile=51 GSM=GSM613885 dateUnrestricted=2011-08-11
track BrevHM_H3K4me1_S1994e
bigDataUrl BrevHM_H3K4me1_S1994.bigWig
shortLabel Bv H3K4me1 35 94
longLabel Breast_vHMEC H3K4me1HS1994 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2869 Pcnt=26 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,210,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=25min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=47-347bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.2869 Hotspot_Percentile=26 GSM=GSM613868 dateUnrestricted=2011-08-11
track BrevHM_H3K4me1_S2618e
bigDataUrl BrevHM_H3K4me1_S2618.bigWig
shortLabel Bv H3K4me1 35 18
longLabel Breast_vHMEC H3K4me1HS2618 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3533 Pcnt=37 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,205,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=3ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=37-279bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.3533 Hotspot_Percentile=37 GSM=GSM613876 dateUnrestricted=2011-08-11
track CD34_H3K4me1_0_09e
bigDataUrl CD34_H3K4me1_0_09.bigWig
shortLabel CD34 H3K4me1 20
longLabel CD34 Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4056 Pcnt=63 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,200,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.4056 Hotspot_Percentile=63 GSM=GSM537628 dateUnrestricted=2011-01-28
track CD34_H3K4me1_9811e
bigDataUrl CD34_H3K4me1_9811.bigWig
shortLabel CD34 H3K4me1 11
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3781 Pcnt=53 DonorID:CD34_39811)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,195,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.3781 Hotspot_Percentile=53 GSM=GSM486708 dateUnrestricted=2011-01-28
track CD34_H3K4me1_9889e
bigDataUrl CD34_H3K4me1_9889.bigWig
shortLabel CD34 H3K4me1 89
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5216 Pcnt=81 DonorID:CD34_39889)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,190,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5216 Hotspot_Percentile=81 GSM=GSM486707 dateUnrestricted=2011-02-11
track CD3_H3K4me1_9811e
bigDataUrl CD3_H3K4me1_9811.bigWig
shortLabel CD3 H3K4me1 11
longLabel CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3765 Pcnt=49 DonorID:CD3_39811)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,185,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.3765 Hotspot_Percentile=49 GSM=GSM537636 dateUnrestricted=2011-01-28
track CD3_H3K4me1_9840e
bigDataUrl CD3_H3K4me1_9840.bigWig
shortLabel CD3 H3K4me1 40
longLabel CD3 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4907 Pcnt=77 DonorID:CD3_39840)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,180,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39840 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4907 Hotspot_Percentile=77 GSM=GSM537646 dateUnrestricted=2011-01-28
track CD8N_H3K4me1_TC001e
bigDataUrl CD8N_H3K4me1_TC001.bigWig
shortLabel CD8N H3K4me1 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3514 Pcnt=35 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,175,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="2 ug" size_fraction=400-600bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.3514 Hotspot_Percentile=35 GSM=GSM613814 dateUnrestricted=2011-08-11
track CM_H3K4me1_32e
bigDataUrl CM_H3K4me1_32.bigWig
shortLabel CM H3K4me1 32
longLabel Colonic Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.31 Pcnt=30 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,170,66
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.31 Hotspot_Percentile=30 GSM=GSM621670 dateUnrestricted=2011-08-12
track DM_H3K4me1_61e
bigDataUrl DM_H3K4me1_61.bigWig
shortLabel DM H3K4me1 61
longLabel Duodenum Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2163 Pcnt=16 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,165,66
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2163 Hotspot_Percentile=16 GSM=GSM621403 dateUnrestricted=2011-08-12
track FK_H3K4me1_2676e
bigDataUrl FK_H3K4me1_2676.bigWig
shortLabel FK H3K4me1 76
longLabel Fetal Kidney H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1268 Pcnt=5 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,160,66
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1268 Hotspot_Percentile=5 GSM=GSM621409 dateUnrestricted=2011-08-12
track FL_H3K4me1_2727e
bigDataUrl FL_H3K4me1_2727.bigWig
shortLabel FL H3K4me1 27
longLabel Fetal Lung H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2044 Pcnt=14 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,155,66
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2044 Hotspot_Percentile=14 GSM=GSM621429 dateUnrestricted=2011-08-12
track H1_H3K4me1_0529e
bigDataUrl H1_H3K4me1_0529.bigWig
shortLabel H1 H3K4me1 29
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2785 Pcnt=21 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,150,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2785 Hotspot_Percentile=21 GSM=GSM433177 dateUnrestricted=2010-05-05
track H1_H3K4me1_11e
bigDataUrl H1_H3K4me1_11.bigWig
shortLabel H1 H3K4me1 11
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.34 Pcnt=33 Library:LL311)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,145,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Upstate chip_antibody_catalog=07-436 chip_antibody_lot=DAM1400139 Hotspot_Score=0.34 Hotspot_Percentile=33 GSM=GSM466739 dateUnrestricted=2010-10-07
track H1_H3K4me1_28e
bigDataUrl H1_H3K4me1_28.bigWig
shortLabel H1 H3K4me1 28
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1997 Pcnt=12 Library:LL228)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,140,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.1997 Hotspot_Percentile=12 GSM=GSM409307 dateUnrestricted=2010-05-03
track H1_H3K4me1_3061e
bigDataUrl H1_H3K4me1_3061.bigWig
shortLabel H1 H3K4me1 61
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2723 Pcnt=19 Library:Solexa-13061)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,135,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2723 Hotspot_Percentile=19 GSM=GSM537679 dateUnrestricted=2011-01-28
track H1_H3K4me1_31e
bigDataUrl H1_H3K4me1_31.bigWig
shortLabel H1 H3K4me1 31
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3905 Pcnt=58 Library:YL131)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,130,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=27 medium=mTeSER Sex=Male batch=H1Jp27(16) experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.3905 Hotspot_Percentile=58 GSM=GSM605312 dateUnrestricted=2011-07-07
track H1_H3K4me1_H1EScd1_De
bigDataUrl H1_H3K4me1_H1EScd1_D.bigWig
shortLabel H1 H3K4me1 D
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3605 Pcnt=42 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,125,66
metadata batch=#1 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K4me1" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.3605 Hotspot_Percentile=42 GSM=GSM434762 dateUnrestricted=2010-05-03
track MCD34_H3K4me1_1549e
bigDataUrl MCD34_H3K4me1_1549.bigWig
shortLabel MCD34 H3K4me1 49
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4797 Pcnt=74 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,120,66
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4797 Hotspot_Percentile=74 GSM=GSM621451 dateUnrestricted=2011-08-12
track MCD34_H3K4me1_8_09e
bigDataUrl MCD34_H3K4me1_8_09.bigWig
shortLabel MCD34 H3K4me1 28
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5335 Pcnt=86 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,115,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5335 Hotspot_Percentile=86 GSM=GSM537650 dateUnrestricted=2011-01-28
track MSCC_H3K4me1_hSKM1e
bigDataUrl MSCC_H3K4me1_hSKM1.bigWig
shortLabel MS H3K4me1 1
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.512 Pcnt=79 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,110,66
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.512 Hotspot_Percentile=79 GSM=GSM621741 dateUnrestricted=2011-08-12
track MSCC_H3K4me1_hSKM2e
bigDataUrl MSCC_H3K4me1_hSKM2.bigWig
shortLabel MS H3K4me1 2
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5688 Pcnt=91 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,105,66
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151304 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5688 Hotspot_Percentile=91 GSM=GSM621752 dateUnrestricted=2011-08-12
track MSCC_H3K4me1_hSKM3e
bigDataUrl MSCC_H3K4me1_hSKM3.bigWig
shortLabel MS H3K4me1 3
longLabel Muscle Satellite Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5267 Pcnt=84 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,100,66
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5267 Hotspot_Percentile=84 GSM=GSM621759 dateUnrestricted=2011-08-12
track PBMC_H3K4me1_TC012e
bigDataUrl PBMC_H3K4me1_TC012.bigWig
shortLabel PBM H3K4me1 12 45
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1534 Pcnt=7 DonorID:TC012)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,95,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K4me1" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=3ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=2ug size_fraction=81-331bp chip_antibody=H3K4me1 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-037-050 chip_antibody_lot=A399-0011 Hotspot_Score=0.1534 Hotspot_Percentile=7 GSM=GSM613884 dateUnrestricted=2011-08-11
track PI_H3K4me1_7_09e
bigDataUrl PI_H3K4me1_7_09.bigWig
shortLabel PI H3K4me1 27
longLabel Pancreatic Islets H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3816 Pcnt=56 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,90,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.3816 Hotspot_Percentile=56 GSM=GSM537642 dateUnrestricted=2011-01-28
track RM_H3K4me1_29e
bigDataUrl RM_H3K4me1_29.bigWig
shortLabel RM H3K4me1 29
longLabel Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1858 Pcnt=9 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,85,66
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1858 Hotspot_Percentile=9 GSM=GSM621639 dateUnrestricted=2011-08-12
track RM_H3K4me1_31e
bigDataUrl RM_H3K4me1_31.bigWig
shortLabel RM H3K4me1 31
longLabel Rectal Mucosa H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2865 Pcnt=23 DonorID:31)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,80,66
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2865 Hotspot_Percentile=23 GSM=GSM621659 dateUnrestricted=2011-08-12
track SM_H3K4me1_19e
bigDataUrl SM_H3K4me1_19.bigWig
shortLabel SM H3K4me1 19
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4091 Pcnt=65 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,75,66
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4091 Hotspot_Percentile=65 GSM=GSM621640 dateUnrestricted=2011-08-12
track SM_H3K4me1_62e
bigDataUrl SM_H3K4me1_62.bigWig
shortLabel SM H3K4me1 62
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.363 Pcnt=44 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,70,66
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.363 Hotspot_Percentile=44 GSM=GSM621686 dateUnrestricted=2011-08-12
track SM_H3K4me1_63e
bigDataUrl SM_H3K4me1_63.bigWig
shortLabel SM H3K4me1 63
longLabel Skeletal Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3679 Pcnt=47 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,65,66
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3679 Hotspot_Percentile=47 GSM=GSM621679 dateUnrestricted=2011-08-12
track SSM_H3K4me1_28e
bigDataUrl SSM_H3K4me1_28.bigWig
shortLabel SSM H3K4me1 28
longLabel Stomach Smooth Muscle H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.354 Pcnt=40 DonorID:28)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,60,66
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=659352 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.354 Hotspot_Percentile=40 GSM=GSM621642 dateUnrestricted=2011-08-12
track ESI3_H3K4me1_5382e
bigDataUrl ESI3_H3K4me1_5382.bigWig
shortLabel ESI3 H3K4me1 82
longLabel ES-I3 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4313 Pcnt=70 Library:Solexa-15382)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,55,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4313 Hotspot_Percentile=70 GSM=GSM537668 dateUnrestricted=2011-01-28
track ESWA7_H3K4me1_2611e
bigDataUrl ESWA7_H3K4me1_2611.bigWig
shortLabel ESWA7 H3K4me1 11
longLabel ES-WA7 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4247 Pcnt=67 Library:Solexa-12611)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,50,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.4247 Hotspot_Percentile=67 GSM=GSM537641 dateUnrestricted=2011-01-28
track IMR90_H3K4me1_133e
bigDataUrl IMR90_H3K4me1_133.bigWig
shortLabel IMR90 H3K4me1 33
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6392 Pcnt=100 Library:SYL133)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,45,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.6392 Hotspot_Percentile=100 GSM=GSM521898 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_222e
bigDataUrl IMR90_H3K4me1_222.bigWig
shortLabel IMR90 H3K4me1 22
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5529 Pcnt=88 Library:LL222)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,40,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5529 Hotspot_Percentile=88 GSM=GSM521895 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_K04e
bigDataUrl IMR90_H3K4me1_K04.bigWig
shortLabel IMR90 H3K4me1 04
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5718 Pcnt=93 Library:SK04)
type bigWig 0 90000
parent containeredacc2H3K4me1
color 0,35,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5718 Hotspot_Percentile=93 GSM=GSM521897 dateUnrestricted=2010-12-22
track containeredacc2H3K4me3
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K4me3 Summary
longLabel EDACC Release II H3K4me3 Summary for 62 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K4me3_1e
bigDataUrl ADMSC_H3K4me3_1.bigWig
shortLabel ADMSC H3K4me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5364 Pcnt=75 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,246,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5364 Hotspot_Percentile=75 GSM=GSM621458 dateUnrestricted=2011-08-12
track AK_H3K4me3_7e
bigDataUrl AK_H3K4me3_7.bigWig
shortLabel AK H3K4me3 27
longLabel Adult Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2112 Pcnt=8 DonorID:27)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,242,0
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2112 Hotspot_Percentile=8 GSM=GSM621648 dateUnrestricted=2011-08-12
track AL_H3K4me3_3e
bigDataUrl AL_H3K4me3_3.bigWig
shortLabel AL H3K4me3 3.0
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2193 Pcnt=11 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,238,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.2193 Hotspot_Percentile=11 GSM=GSM537697 dateUnrestricted=2011-01-28
track AL_H3K4me3_4e
bigDataUrl AL_H3K4me3_4.bigWig
shortLabel AL H3K4me3 4
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2413 Pcnt=15 DonorID:4)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,234,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adult Liver" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=liver donor_id=4 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2413 Hotspot_Percentile=15 GSM=GSM621675 dateUnrestricted=2011-08-12
track AL_H3K4me3_5e
bigDataUrl AL_H3K4me3_5.bigWig
shortLabel AL H3K4me3 5.0
longLabel Adult Liver H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA DonorID:5.0)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,230,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537709 dateUnrestricted=2011-01-28
track AN_H3K4me3_7e
bigDataUrl AN_H3K4me3_7.bigWig
shortLabel AN H3K4me3 7
longLabel Adipose Nuclei H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3453 Pcnt=39 DonorID:7)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,226,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3453 Hotspot_Percentile=39 GSM=GSM621435 dateUnrestricted=2011-08-12
track BMDMSC_H3K4me3_57e
bigDataUrl BMDMSC_H3K4me3_57.bigWig
shortLabel BMDMSC H3K4me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6126 Pcnt=85 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,222,0
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.6126 Hotspot_Percentile=85 GSM=GSM621422 dateUnrestricted=2011-08-12
track BreMyo_H3K4me3_RM066e
bigDataUrl BreMyo_H3K4me3_RM066.bigWig
shortLabel BMC H3K4me3 66
longLabel Breast_Myoepithelial_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3786 Pcnt=48 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,218,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=10ug size_fraction=NA chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.3786 Hotspot_Percentile=48 GSM=GSM613869 dateUnrestricted=2011-08-11
track BrevHM_H3K4me3_RM035e
bigDataUrl BrevHM_H3K4me3_RM035.bigWig
shortLabel Bv H3K4me3 35 15
longLabel Breast_vHMEC H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5139 Pcnt=72 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,214,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=1ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=81-281bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.5139 Hotspot_Percentile=72 GSM=GSM613874 dateUnrestricted=2011-08-11
track CD15_H3K4me3_23e
bigDataUrl CD15_H3K4me3_23.bigWig
shortLabel CD15 H3K4me3 23.0
longLabel CD15 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.7312 Pcnt=97 DonorID:23.0)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,210,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD15 Primary Cells" markers=CD15+ donor_id=23.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.7312 Hotspot_Percentile=97 GSM=GSM537702 dateUnrestricted=2011-01-28
track CD19_H3K4me3_1_08e
bigDataUrl CD19_H3K4me3_1_08.bigWig
shortLabel CD19 H3K4me3 1
longLabel CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3814 Pcnt=51 DonorID:CD19_8/1/08)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,206,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_8/1/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3814 Hotspot_Percentile=51 GSM=GSM537622 dateUnrestricted=2011-01-28
track CD19_H3K4me3_2_08e
bigDataUrl CD19_H3K4me3_2_08.bigWig
shortLabel CD19 H3K4me3 22
longLabel CD19 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3823 Pcnt=52 DonorID:CD19_12/22/08)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,202,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/22/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3823 Hotspot_Percentile=52 GSM=GSM537632 dateUnrestricted=2011-01-28
track CD34_H3K4me3_0_09e
bigDataUrl CD34_H3K4me3_0_09.bigWig
shortLabel CD34 H3K4me3 20
longLabel CD34 Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4645 Pcnt=64 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,198,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4645 Hotspot_Percentile=64 GSM=GSM537629 dateUnrestricted=2011-01-28
track CD34_H3K4me3_1492e
bigDataUrl CD34_H3K4me3_1492.bigWig
shortLabel MCD34 H3K4me3 92
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2857 Pcnt=28 DonorID:RO01492)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,194,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Male biomaterial_type="Primary Cell" donor_id="UW RO 01492" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2857 Hotspot_Percentile=28 GSM=GSM621667 dateUnrestricted=2011-08-12
track CD34_H3K4me3_1536e
bigDataUrl CD34_H3K4me3_1536.bigWig
shortLabel MCD34 H3K4me3 36
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2531 Pcnt=18 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,190,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2531 Hotspot_Percentile=18 GSM=GSM621665 dateUnrestricted=2011-08-12
track CD34_H3K4me3_9629e
bigDataUrl CD34_H3K4me3_9629.bigWig
shortLabel CD34 H3K4me3 29
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5312 Pcnt=74 DonorID:CD34_39629)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,186,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39629 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.5312 Hotspot_Percentile=74 GSM=GSM486709 dateUnrestricted=2011-01-28
track CD34_H3K4me3_9804e
bigDataUrl CD34_H3K4me3_9804.bigWig
shortLabel CD34 H3K4me3 04
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3749 Pcnt=46 DonorID:CD34_39804)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,182,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3749 Hotspot_Percentile=46 GSM=GSM486711 dateUnrestricted=2011-01-28
track CD3_H3K4me3_9661e
bigDataUrl CD3_H3K4me3_9661.bigWig
shortLabel CD3 H3K4me3 61
longLabel CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4738 Pcnt=66 DonorID:CD3_39661)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,178,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=331024 Hotspot_Score=0.4738 Hotspot_Percentile=66 GSM=GSM537615 dateUnrestricted=2011-01-28
track CD3_H3K4me3_9804e
bigDataUrl CD3_H3K4me3_9804.bigWig
shortLabel CD3 H3K4me3 04
longLabel CD3 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3808 Pcnt=49 DonorID:CD3_39804)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,174,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3808 Hotspot_Percentile=49 GSM=GSM537633 dateUnrestricted=2011-01-28
track CD8N_H3K4me3_TC001e
bigDataUrl CD8N_H3K4me3_TC001.bigWig
shortLabel CD8N H3K4me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2562 Pcnt=20 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,170,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="5 ul" chip_antibody=H3K4me3 size_fraction=400-600bp chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.2562 Hotspot_Percentile=20 GSM=GSM613811 dateUnrestricted=2011-08-11
track CD8N_H3K4me3_TC010e
bigDataUrl CD8N_H3K4me3_TC010.bigWig
shortLabel CD8N H3K4me3 10
longLabel CD8_Naive_Primary_Cells Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2599 Pcnt=21 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,166,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers=CD8+,CD45RA+ donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XY" parity=NA experiment_type="Histone H3K4me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=9ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=78-313bp chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751S chip_antibody_lot=2 Hotspot_Score=0.2599 Hotspot_Percentile=21 GSM=GSM613881 dateUnrestricted=2011-08-11
track CM_H3K4me3_32e
bigDataUrl CM_H3K4me3_32.bigWig
shortLabel CM H3K4me3 32
longLabel Colonic Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4897 Pcnt=67 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,162,0
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4897 Hotspot_Percentile=67 GSM=GSM621671 dateUnrestricted=2011-08-12
track DM_H3K4me3_61e
bigDataUrl DM_H3K4me3_61.bigWig
shortLabel DM H3K4me3 61
longLabel Duodenum Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3018 Pcnt=30 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,158,0
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3018 Hotspot_Percentile=30 GSM=GSM621432 dateUnrestricted=2011-08-12
track FB_H3K4me3_2510e
bigDataUrl FB_H3K4me3_2510.bigWig
shortLabel FB H3K4me3 10
longLabel Fetal Brain H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1128 Pcnt=2 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,154,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1128 Hotspot_Percentile=2 GSM=GSM621457 dateUnrestricted=2011-08-12
track FK_H3K4me3_2676e
bigDataUrl FK_H3K4me3_2676.bigWig
shortLabel FK H3K4me3 76
longLabel Fetal Kidney H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2123 Pcnt=10 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,150,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2123 Hotspot_Percentile=10 GSM=GSM621438 dateUnrestricted=2011-08-12
track FL_H3K4me3_2676e
bigDataUrl FL_H3K4me3_2676.bigWig
shortLabel FL H3K4me3 76
longLabel Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2218 Pcnt=13 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,146,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2218 Hotspot_Percentile=13 GSM=GSM621405 dateUnrestricted=2011-08-12
track FL_H3K4me3_2727e
bigDataUrl FL_H3K4me3_2727.bigWig
shortLabel FL H3K4me3 27
longLabel Fetal Lung H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1892 Pcnt=3 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,142,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1892 Hotspot_Percentile=3 GSM=GSM621417 dateUnrestricted=2011-08-12
track H1_H3K4me3_0398e
bigDataUrl H1_H3K4me3_0398.bigWig
shortLabel H1 H3K4me3 98
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3314 Pcnt=36 Library:Solexa-10398)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,138,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=12/23/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1541166 Hotspot_Score=0.3314 Hotspot_Percentile=36 GSM=GSM537680 dateUnrestricted=2011-01-28
track H1_H3K4me3_12e
bigDataUrl H1_H3K4me3_12.bigWig
shortLabel H1 H3K4me3 12
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6914 Pcnt=92 Library:LL312)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,134,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.6914 Hotspot_Percentile=92 GSM=GSM469971 dateUnrestricted=2010-10-07
track H1_H3K4me3_2522e
bigDataUrl H1_H3K4me3_2522.bigWig
shortLabel H1 H3K4me3 22
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2734 Pcnt=23 Library:Solexa-12522)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,130,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2734 Hotspot_Percentile=23 GSM=GSM537681 dateUnrestricted=2011-01-28
track H1_H3K4me3_27e
bigDataUrl H1_H3K4me3_27.bigWig
shortLabel H1 H3K4me3 27
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6545 Pcnt=87 Library:LL227)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,126,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1494280 Hotspot_Score=0.6545 Hotspot_Percentile=87 GSM=GSM409308 dateUnrestricted=2010-05-03
track H1_H3K4me3_67e
bigDataUrl H1_H3K4me3_67.bigWig
shortLabel H1 H3K4me3 67
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6969 Pcnt=93 Library:SAK67)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,122,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog="Millipore 04-745" chip_antibody_lot="DAM 1554357" Hotspot_Score=0.6969 Hotspot_Percentile=93 GSM=GSM605315 dateUnrestricted=2011-07-07
track H1_H3K4me3_8038e
bigDataUrl H1_H3K4me3_8038.bigWig
shortLabel H1 H3K4me3 38
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4388 Pcnt=61 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,118,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=331024 Hotspot_Score=0.4388 Hotspot_Percentile=61 GSM=GSM433170 dateUnrestricted=2010-05-05
track H1_H3K4me3_H1EScd1_Ae
bigDataUrl H1_H3K4me3_H1EScd1_A.bigWig
shortLabel H1 H3K4me3 A
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.5868 Pcnt=82 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,114,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage="REMC batch1" medium="CDI protocol" sex=Male experiment_type="Histone H3K4me1" extraction_protocol=n/a extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=n/a chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=1 Hotspot_Score=0.5868 Hotspot_Percentile=82 GSM=GSM410808 dateUnrestricted=2010-05-03
track H1_H3K4me3_H1EScd2_Ce
bigDataUrl H1_H3K4me3_H1EScd2_C.bigWig
shortLabel H1 H3K4me3 C
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.7097 Pcnt=95 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,110,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K4me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="7.06 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K4me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9751 chip_antibody_lot=2 Hotspot_Score=0.7097 Hotspot_Percentile=95 GSM=GSM432392 dateUnrestricted=2010-05-03
track MCD34_H3K4me3_1480e
bigDataUrl MCD34_H3K4me3_1480.bigWig
shortLabel MCD34 H3K4me3 80
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2457 Pcnt=16 DonorID:RO01480)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,106,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2457 Hotspot_Percentile=16 GSM=GSM621437 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1517e
bigDataUrl MCD34_H3K4me3_1517.bigWig
shortLabel MCD34 H3K4me3 17
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5403 Pcnt=77 DonorID:RO01517)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,102,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01517" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5403 Hotspot_Percentile=77 GSM=GSM621404 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1549e
bigDataUrl MCD34_H3K4me3_1549.bigWig
shortLabel MCD34 H3K4me3 49
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5962 Pcnt=84 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,98,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5962 Hotspot_Percentile=84 GSM=GSM621439 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_8_09e
bigDataUrl MCD34_H3K4me3_8_09.bigWig
shortLabel MCD34 H3K4me3 28
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6676 Pcnt=90 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,94,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.6676 Hotspot_Percentile=90 GSM=GSM537652 dateUnrestricted=2011-01-28
track MSCC_H3K4me3_hSKM1e
bigDataUrl MSCC_H3K4me3_hSKM1.bigWig
shortLabel MS H3K4me3 1
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5469 Pcnt=79 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,90,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5469 Hotspot_Percentile=79 GSM=GSM621737 dateUnrestricted=2011-08-12
track MSCC_H3K4me3_hSKM2e
bigDataUrl MSCC_H3K4me3_hSKM2.bigWig
shortLabel MS H3K4me3 2
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4229 Pcnt=57 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,86,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4229 Hotspot_Percentile=57 GSM=GSM621745 dateUnrestricted=2011-08-12
track MSCC_H3K4me3_hSKM3e
bigDataUrl MSCC_H3K4me3_hSKM3.bigWig
shortLabel MS H3K4me3 3
longLabel Muscle Satellite Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4243 Pcnt=59 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,82,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4243 Hotspot_Percentile=59 GSM=GSM621760 dateUnrestricted=2011-08-12
track PI_H3K4me3_7_09e
bigDataUrl PI_H3K4me3_7_09.bigWig
shortLabel PI H3K4me3 27
longLabel Pancreatic Islets H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5002 Pcnt=70 DonorID:pancreaticisletsnormal_3/27/09)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,78,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_3/27/09" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=374056 Hotspot_Score=0.5002 Hotspot_Percentile=70 GSM=GSM537643 dateUnrestricted=2011-01-28
track RM_H3K4me3_29e
bigDataUrl RM_H3K4me3_29.bigWig
shortLabel RM H3K4me3 29
longLabel Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3461 Pcnt=41 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,74,0
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3461 Hotspot_Percentile=41 GSM=GSM621643 dateUnrestricted=2011-08-12
track RM_H3K4me3_31e
bigDataUrl RM_H3K4me3_31.bigWig
shortLabel RM H3K4me3 31
longLabel Rectal Mucosa H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3226 Pcnt=34 DonorID:31)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,70,0
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3226 Hotspot_Percentile=34 GSM=GSM621658 dateUnrestricted=2011-08-12
track RSM_H3K4me3_30e
bigDataUrl RSM_H3K4me3_30.bigWig
shortLabel RSM H3K4me3 30
longLabel Rectal Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3023 Pcnt=31 DonorID:30)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,66,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3023 Hotspot_Percentile=31 GSM=GSM621662 dateUnrestricted=2011-08-12
track SM_H3K4me3_19e
bigDataUrl SM_H3K4me3_19.bigWig
shortLabel SM H3K4me3 19
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2829 Pcnt=26 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,62,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2829 Hotspot_Percentile=26 GSM=GSM621637 dateUnrestricted=2011-08-12
track SM_H3K4me3_62e
bigDataUrl SM_H3K4me3_62.bigWig
shortLabel SM H3K4me3 62
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3359 Pcnt=38 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,58,0
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3359 Hotspot_Percentile=38 GSM=GSM621685 dateUnrestricted=2011-08-12
track SM_H3K4me3_63e
bigDataUrl SM_H3K4me3_63.bigWig
shortLabel SM H3K4me3 63
longLabel Skeletal Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2763 Pcnt=25 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,54,0
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2763 Hotspot_Percentile=25 GSM=GSM621694 dateUnrestricted=2011-08-12
track SSM_H3K4me3_28e
bigDataUrl SSM_H3K4me3_28.bigWig
shortLabel SSM H3K4me3 28
longLabel Stomach Smooth Muscle H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4503 Pcnt=62 DonorID:28)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,50,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4503 Hotspot_Percentile=62 GSM=GSM621645 dateUnrestricted=2011-08-12
track Treg_H3K4me3_20e
bigDataUrl Treg_H3K4me3_20.bigWig
shortLabel Treg H3K4me3 20
longLabel Treg Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4929 Pcnt=69 DonorID:20)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,46,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4929 Hotspot_Percentile=69 GSM=GSM621388 dateUnrestricted=2011-08-12
track iPS11a_H3K4me3_1733e
bigDataUrl iPS11a_H3K4me3_1733.bigWig
shortLabel iPS11a H3K4me3 33
longLabel iPS 11a H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3159 Pcnt=33 Library:Solexa-11733)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,42,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-11a lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=19 medium=KSR sex=Male batch=1/26/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1541166 Hotspot_Score=0.3159 Hotspot_Percentile=33 GSM=GSM537694 dateUnrestricted=2011-01-28
track iPS15b_H3K4me3_0743e
bigDataUrl iPS15b_H3K4me3_0743.bigWig
shortLabel iPS15b H3K4me3 43
longLabel iPS 15b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3714 Pcnt=44 Library:Solexa-20743)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,38,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.3714 Hotspot_Percentile=44 GSM=GSM537687 dateUnrestricted=2011-01-28
track iPS18c_H3K4me3_5173e
bigDataUrl iPS18c_H3K4me3_5173.bigWig
shortLabel iPS18c H3K4me3 73
longLabel iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1963 Pcnt=5 Library:Solexa-15173)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,34,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.1963 Hotspot_Percentile=5 GSM=GSM537671 dateUnrestricted=2011-01-28
track iPS18c_H3K4me3_9747e
bigDataUrl iPS18c_H3K4me3_9747.bigWig
shortLabel iPS18c H3K4me3 47
longLabel iPS 18c H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5588 Pcnt=80 Library:Solexa-19747)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,30,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.5588 Hotspot_Percentile=80 GSM=GSM537676 dateUnrestricted=2011-01-28
track iPS20b_H3K4me3_4Me3e
bigDataUrl iPS20b_H3K4me3_4Me3.bigWig
shortLabel iPS20b H3K4me3 e3
longLabel iPS 20b H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2085 Pcnt=7 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,26,0
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=18 line=hiPS-20b differentiation_method=NA batch=hiPS-20b-2 biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2085 Hotspot_Percentile=7 GSM=GSM621423 dateUnrestricted=2011-08-12
track ESI3_H3K4me3_2681e
bigDataUrl ESI3_H3K4me3_2681.bigWig
shortLabel ESI3 H3K4me3 81
longLabel ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4174 Pcnt=56 Library:Solexa-12681)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,22,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4174 Hotspot_Percentile=56 GSM=GSM537626 dateUnrestricted=2011-01-28
track ESI3_H3K4me3_5474e
bigDataUrl ESI3_H3K4me3_5474.bigWig
shortLabel ESI3 H3K4me3 74
longLabel ES-I3 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3698 Pcnt=43 Library:Solexa-15474)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,18,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=DAM1623866 Hotspot_Score=0.3698 Hotspot_Percentile=43 GSM=GSM537665 dateUnrestricted=2011-01-28
track ESWA7_H3K4me3_3062e
bigDataUrl ESWA7_H3K4me3_3062.bigWig
shortLabel ESWA7 H3K4me3 62
longLabel ES-WA7 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.4014 Pcnt=54 Library:Solexa-13062)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,14,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4014 Hotspot_Percentile=54 GSM=GSM537623 dateUnrestricted=2011-01-28
track H9_H3K4me3_SK101e
bigDataUrl H9_H3K4me3_SK101.bigWig
shortLabel H9 H3K4me3 01
longLabel H9 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6546 Pcnt=89 Library:SK101)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,10,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H9 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Female batch=H9 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.6546 Hotspot_Percentile=89 GSM=GSM605316 dateUnrestricted=2011-07-07
track IMR90_H3K4me3_221e
bigDataUrl IMR90_H3K4me3_221.bigWig
shortLabel IMR90 H3K4me3 21
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.8482 Pcnt=100 Library:LL221)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,6,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.8482 Hotspot_Percentile=100 GSM=GSM469970 dateUnrestricted=2010-10-07
track IMR90_H3K4me3_K03e
bigDataUrl IMR90_H3K4me3_K03.bigWig
shortLabel IMR90 H3K4me3 03
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7673 Pcnt=98 Library:SK03)
type bigWig 0 90000
parent containeredacc2H3K4me3
color 0,2,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39159 chip_antibody_lot=15808002 Hotspot_Score=0.7673 Hotspot_Percentile=98 GSM=GSM521901 dateUnrestricted=2010-12-22
track containeredacc2H3K9me3
container multiWig
superTrack edaccContainerbyExperiment
shortLabel H3K9me3 Summary
longLabel EDACC Release II H3K9me3 Summary for 57 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track ADMSC_H3K9me3_1e
bigDataUrl ADMSC_H3K9me3_1.bigWig
shortLabel ADMSC H3K9me3 1
longLabel Adipose Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0606 Pcnt=20 DonorID:1)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 251,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=ADMSC donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Cell" donor_id=1 biomaterial_provider="Harvard University" donor_age=31 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0606 Hotspot_Percentile=20 GSM=GSM621398 dateUnrestricted=2011-08-12
track AK_H3K9me3_7e
bigDataUrl AK_H3K9me3_7.bigWig
shortLabel AK H3K9me3 27
longLabel Adult Kidney H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0388 Pcnt=3 DonorID:27)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 247,215,0
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0388 Hotspot_Percentile=3 GSM=GSM621651 dateUnrestricted=2011-08-12
track AL_H3K9me3_3e
bigDataUrl AL_H3K9me3_3.bigWig
shortLabel AL H3K9me3 3.0
longLabel Adult Liver H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1451 Pcnt=44 DonorID:3.0)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 243,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=3.0 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1451 Hotspot_Percentile=44 GSM=GSM537695 dateUnrestricted=2011-01-28
track AL_H3K9me3_5e
bigDataUrl AL_H3K9me3_5.bigWig
shortLabel AL H3K9me3 5.0
longLabel Adult Liver H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1618 Pcnt=49 DonorID:5.0)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 239,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="MGH Pathology" biomaterial_type="Primary Tissue" tissue_type=liver tissue_depot=liver collection_method=surgery donor_id=5.0 donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1618 Hotspot_Percentile=49 GSM=GSM537710 dateUnrestricted=2011-01-28
track AN_H3K9me3_7e
bigDataUrl AN_H3K9me3_7.bigWig
shortLabel AN H3K9me3 7
longLabel Adipose Nuclei H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0488 Pcnt=10 DonorID:7)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 235,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Adipose Nuclei" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=abdomen donor_id=7 biomaterial_provider="Harvard University" donor_age=49 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0488 Hotspot_Percentile=10 GSM=GSM621391 dateUnrestricted=2011-08-12
track BMDMSC_H3K9me3_57e
bigDataUrl BMDMSC_H3K9me3_57.bigWig
shortLabel BMDMSC H3K9me3 57
longLabel Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0841 Pcnt=27 DonorID:57)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 231,215,0
metadata donor_health_status=healthy molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=BM-MSC donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=57 biomaterial_provider="Rikshospitalet University Hospital" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0841 Hotspot_Percentile=27 GSM=GSM621426 dateUnrestricted=2011-08-12
track BreMyo_H3K9me3_RM066e
bigDataUrl BreMyo_H3K9me3_RM066.bigWig
shortLabel BMC H3K9me3 66
longLabel Breast_Myoepithelial_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3223 Pcnt=90 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 227,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.3ug chip_protocol_bead_type="Sepharose G/A beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=NA chip_antibody=H3K9me3 chip_antibody_provider=Diagenode chip_antibody_catalog=pAb-056-050 chip_antibody_lot=A93-0042 Hotspot_Score=0.3223 Hotspot_Percentile=90 GSM=GSM613871 dateUnrestricted=2011-08-11
track BreMyo_H3K9me3_RM080e
bigDataUrl BreMyo_H3K9me3_RM080.bigWig
shortLabel BMC H3K9me3 80
longLabel Breast_Myoepithelial_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2698 Pcnt=86 DonorID:RM080)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 223,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM080 donor_age=33 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=African-American passage_if_expanded=NA karyotype="46, XX" parity=2 location=Left experiment_type="Histone H3K9me3" extraction_protocol="BCCAGSC ChIP Standard Operating Procedure" extraction_protocol_type_of_sonicator="Fisher 550 Sonic Dismembrator" extraction_protocol_sonication_cycles=10min chip_protocol="BCCAGSC ChIP Standard Operating Procedure" chip_protocol_chromatin_amount=3.5ug chip_protocol_bead_type="Sepharose A/G beads" chip_protocol_bead_amount=20ul chip_protocol_antibody_amount=5ug size_fraction=63-271bp chip_antibody=H3K9me3 chip_antibody_provider=diagenode chip_antibody_catalog=pAb056050 chip_antibody_lot=A930042 Hotspot_Score=0.2698 Hotspot_Percentile=86 GSM=GSM613886 dateUnrestricted=2011-08-11
track BrevHM_H3K9me3_RM035e
bigDataUrl BrevHM_H3K9me3_RM035.bigWig
shortLabel Bv H3K9me3 35 17
longLabel Breast_vHMEC H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1198 Pcnt=37 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 219,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin parity=N/A experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=260-572bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.1198 Hotspot_Percentile=37 GSM=GSM613875 dateUnrestricted=2011-08-11
track CD19_H3K9me3_0_09e
bigDataUrl CD19_H3K9me3_0_09.bigWig
shortLabel CD19 H3K9me3 20
longLabel CD19 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2524 Pcnt=81 DonorID:CD19_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 215,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_2/20/09 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2524 Hotspot_Percentile=81 GSM=GSM537654 dateUnrestricted=2011-01-28
track CD19_H3K9me3_9_08e
bigDataUrl CD19_H3K9me3_9_08.bigWig
shortLabel CD19 H3K9me3 29
longLabel CD19 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2197 Pcnt=76 DonorID:CD19_12/29/08)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 211,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_12/29/08 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2197 Hotspot_Percentile=76 GSM=GSM537635 dateUnrestricted=2011-01-28
track CD34_H3K9me3_0_09e
bigDataUrl CD34_H3K9me3_0_09.bigWig
shortLabel CD34 H3K9me3 20
longLabel CD34 Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2666 Pcnt=83 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 207,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2666 Hotspot_Percentile=83 GSM=GSM537653 dateUnrestricted=2011-01-28
track CD34_H3K9me3_1536e
bigDataUrl CD34_H3K9me3_1536.bigWig
shortLabel MCD34 H3K9me3 36
longLabel Mobilized CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1396 Pcnt=41 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 203,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1396 Hotspot_Percentile=41 GSM=GSM621663 dateUnrestricted=2011-08-12
track CD34_H3K9me3_9811e
bigDataUrl CD34_H3K9me3_9811.bigWig
shortLabel CD34 H3K9me3 11
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2121 Pcnt=71 DonorID:CD34_39811)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 199,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2121 Hotspot_Percentile=71 GSM=GSM486712 dateUnrestricted=2010-10-06
track CD34_H3K9me3_9889e
bigDataUrl CD34_H3K9me3_9889.bigWig
shortLabel CD34 H3K9me3 89
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3378 Pcnt=93 DonorID:CD34_39889)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 195,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3378 Hotspot_Percentile=93 GSM=GSM486710 dateUnrestricted=2010-10-06
track CD3_H3K9me3_9811e
bigDataUrl CD3_H3K9me3_9811.bigWig
shortLabel CD3 H3K9me3 11
longLabel CD3 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1669 Pcnt=51 DonorID:CD3_39811)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 191,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1669 Hotspot_Percentile=51 GSM=GSM537637 dateUnrestricted=2011-01-28
track CD3_H3K9me3_9840e
bigDataUrl CD3_H3K9me3_9840.bigWig
shortLabel CD3 H3K9me3 40
longLabel CD3 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2465 Pcnt=80 DonorID:CD3_39840)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 187,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD3 Primary Cells" markers=CD3+ donor_id=CD3_39840 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2465 Hotspot_Percentile=80 GSM=GSM537645 dateUnrestricted=2011-01-28
track CD8N_H3K9me3_TC001e
bigDataUrl CD8N_H3K9me3_TC001.bigWig
shortLabel CD8N H3K9me3 01
longLabel CD8_Naive_Primary_Cells Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1293 Pcnt=39 DonorID:TC001)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 183,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive Primary Cell" markers=CD8+,CD45RA+ donor_id=TC001 donor_age="21 years" donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a parity=NA karyotype="46, XY" experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="20 min" chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount="1 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="15 ul" chip_protocol_antibody_amount="2 ug" chip_antibody=H3K9me3 chip_antibody_provider=Diagenode size_fraction=400-600bp chip_antibody_catalog=pAb-056-050 chip_antibody_lot=A93-0012 Hotspot_Score=0.1293 Hotspot_Percentile=39 GSM=GSM613812 dateUnrestricted=2011-08-11
track CM_H3K9me3_32e
bigDataUrl CM_H3K9me3_32.bigWig
shortLabel CM H3K9me3 32
longLabel Colonic Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1436 Pcnt=42 DonorID:32)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 179,215,0
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1436 Hotspot_Percentile=42 GSM=GSM621668 dateUnrestricted=2011-08-12
track DM_H3K9me3_61e
bigDataUrl DM_H3K9me3_61.bigWig
shortLabel DM H3K9me3 61
longLabel Duodenum Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0935 Pcnt=32 DonorID:61)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 175,215,0
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0935 Hotspot_Percentile=32 GSM=GSM621395 dateUnrestricted=2011-08-12
track FB_H3K9me3_2510e
bigDataUrl FB_H3K9me3_2510.bigWig
shortLabel FB H3K9me3 10
longLabel Fetal Brain H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0596 Pcnt=19 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 171,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal brain" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=brain donor_id="UW H-22510" biomaterial_provider=UW donor_age="122 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0596 Hotspot_Percentile=19 GSM=GSM621427 dateUnrestricted=2011-08-12
track FH_H3K9me3_2727e
bigDataUrl FH_H3K9me3_2727.bigWig
shortLabel FH H3K9me3 27
longLabel Fetal Heart H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0676 Pcnt=22 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 167,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal heart" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=heart donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0676 Hotspot_Percentile=22 GSM=GSM621434 dateUnrestricted=2011-08-12
track FK_H3K9me3_2676e
bigDataUrl FK_H3K9me3_2676.bigWig
shortLabel FK H3K9me3 76
longLabel Fetal Kidney H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0385 Pcnt=2 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 163,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal kidney" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id="UW H-22676" biomaterial_provider=UW donor_age="120 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0385 Hotspot_Percentile=2 GSM=GSM621441 dateUnrestricted=2011-08-12
track FL_H3K9me3_2727e
bigDataUrl FL_H3K9me3_2727.bigWig
shortLabel FL H3K9me3 27
longLabel Fetal Lung H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0411 Pcnt=7 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 159,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Fetal lung" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=lung donor_id="UW H-22727" biomaterial_provider=UW donor_age="101 days" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0411 Hotspot_Percentile=7 GSM=GSM621397 dateUnrestricted=2011-08-12
track H1_H3K9me3_18e
bigDataUrl H1_H3K9me3_18.bigWig
shortLabel H1 H3K9me3 18
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4557 Pcnt=NA Library:LL218)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 155,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.4557 Hotspot_Percentile=NA GSM=GSM605325 dateUnrestricted=2011-07-07
track H1_H3K9me3_2525e
bigDataUrl H1_H3K9me3_2525.bigWig
shortLabel H1 H3K9me3 25
longLabel H1 H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1525 Pcnt=46 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 151,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1525 Hotspot_Percentile=46 GSM=GSM433174 dateUnrestricted=2010-05-05
track H1_H3K9me3_75e
bigDataUrl H1_H3K9me3_75.bigWig
shortLabel H1 H3K9me3 75
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1788 Pcnt=56 Library:YL75)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 147,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.1788 Hotspot_Percentile=56 GSM=GSM605327 dateUnrestricted=2011-07-07
track H1_H3K9me3_77e
bigDataUrl H1_H3K9me3_77.bigWig
shortLabel H1 H3K9me3 77
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2029 Pcnt=68 Library:YL77)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 143,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2029 Hotspot_Percentile=68 GSM=GSM605328 dateUnrestricted=2011-07-07
track H1_H3K9me3_H1EScd1_Ae
bigDataUrl H1_H3K9me3_H1EScd1_A.bigWig
shortLabel H1 H3K9me3 A
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.2167 Pcnt=73 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 139,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium="CDI protocol" sex=Male batch=#1 experiment_type="Histone H3K9me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="15 min" chip_protocol="Farnham lab protocol" chip_protocol_chromatin_amount=44ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30uL (CST)" chip_protocol_antibody_amount=NA chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=492774 Hotspot_Score=0.2167 Hotspot_Percentile=73 GSM=GSM428291 dateUnrestricted=2010-05-03
track H1_H3K9me3_H1EScd2_Be
bigDataUrl H1_H3K9me3_H1EScd2_B.bigWig
shortLabel H1 H3K9me3 B
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.3856 Pcnt=97 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 135,215,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA sex=Male experiment_type="Histone H3K9me3" extraction_protocol=NA extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles="25 min" chip_protocol=NA chip_protocol_chromatin_amount="35.3 ug" chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount="30 ul" chip_protocol_antibody_amount=NA chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=492774 Hotspot_Score=0.3856 Hotspot_Percentile=97 GSM=GSM450266 dateUnrestricted=2010-10-07
track MCD34_H3K9me3_1480e
bigDataUrl MCD34_H3K9me3_1480.bigWig
shortLabel MCD34 H3K9me3 80
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0994 Pcnt=34 DonorID:RO01480)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 131,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0994 Hotspot_Percentile=34 GSM=GSM621399 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_1549e
bigDataUrl MCD34_H3K9me3_1549.bigWig
shortLabel MCD34 H3K9me3 49
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3224 Pcnt=92 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 127,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3224 Hotspot_Percentile=92 GSM=GSM621436 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_8_09e
bigDataUrl MCD34_H3K9me3_8_09.bigWig
shortLabel MCD34 H3K9me3 28
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3479 Pcnt=95 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 123,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3479 Hotspot_Percentile=95 GSM=GSM537663 dateUnrestricted=2011-01-28
track MSCC_H3K9me3_hSKM1e
bigDataUrl MSCC_H3K9me3_hSKM1.bigWig
shortLabel MS H3K9me3 1
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0578 Pcnt=17 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 119,215,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-1 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0578 Hotspot_Percentile=17 GSM=GSM621744 dateUnrestricted=2011-08-12
track MSCC_H3K9me3_hSKM2e
bigDataUrl MSCC_H3K9me3_hSKM2.bigWig
shortLabel MS H3K9me3 2
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0538 Pcnt=14 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 115,215,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-2 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0538 Hotspot_Percentile=14 GSM=GSM621747 dateUnrestricted=2011-08-12
track MSCC_H3K9me3_hSKM3e
bigDataUrl MSCC_H3K9me3_hSKM3.bigWig
shortLabel MS H3K9me3 3
longLabel Muscle Satellite Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0852 Pcnt=29 DonorID:NA)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 111,215,0
metadata lineage=mesoderm medium=DMEM molecule="genomic DNA" disease=none passage=unknown line=hSKM differentiation_method="in vivo" batch=hSKM-3 biomaterial_type="Cell Line" differentiation_stage=differentiated Sex=Unknown biomaterial_provider="Duke University" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0852 Hotspot_Percentile=29 GSM=GSM621753 dateUnrestricted=2011-08-12
track PBMC_H3K9me3_TC010e
bigDataUrl PBMC_H3K9me3_TC010.bigWig
shortLabel PBM H3K9me3 10 22
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1958 Pcnt=66 DonorID:TC010)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 107,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC010 donor_age=28 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XY" parity=NA blood_type=O+ experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=223-531bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.1958 Hotspot_Percentile=66 GSM=GSM613878 dateUnrestricted=2011-08-11
track PBMC_H3K9me3_TC012e
bigDataUrl PBMC_H3K9me3_TC012.bigWig
shortLabel PBM H3K9me3 12 42
longLabel Peripheral_Blood_Mononuclear_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.206 Pcnt=69 DonorID:TC012)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 103,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC012 donor_age=27 donor_health_status="Disease Free" donor_sex=Male donor_ethnicity=Indian/Arabian passage_if_expanded=NA karyotype="46, XY" parity=NA blood_type=NA experiment_type="Histone H3K9me3" extraction_protocol="Farnham Lab Protocol" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=30min chip_protocol="Farnham Lab Protocol" chip_protocol_chromatin_amount=5ug chip_protocol_bead_type="Protein G Mag Beads" chip_protocol_bead_amount=15ul chip_protocol_antibody_amount=n/a size_fraction=270-474bp chip_antibody=H3K9me3 chip_antibody_provider="Cell Signaling Technology" chip_antibody_catalog=9754S chip_antibody_lot=1 Hotspot_Score=0.206 Hotspot_Percentile=69 GSM=GSM613882 dateUnrestricted=2011-08-11
track PI_H3K9me3_0_00e
bigDataUrl PI_H3K9me3_0_00.bigWig
shortLabel PI H3K9me3 0
longLabel Pancreatic Islets H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1883 Pcnt=61 DonorID:pancreaticisletsnormal_0/0/00)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 99,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_0/0/00" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=566416 Hotspot_Score=0.1883 Hotspot_Percentile=61 GSM=GSM537686 dateUnrestricted=2011-01-28
track RM_H3K9me3_29e
bigDataUrl RM_H3K9me3_29.bigWig
shortLabel RM H3K9me3 29
longLabel Rectal Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0546 Pcnt=15 DonorID:29)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 95,215,0
metadata collection_method=surgery donor_health_status="normal mucosa" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=29 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0546 Hotspot_Percentile=15 GSM=GSM621633 dateUnrestricted=2011-08-12
track RM_H3K9me3_31e
bigDataUrl RM_H3K9me3_31.bigWig
shortLabel RM H3K9me3 31
longLabel Rectal Mucosa H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0407 Pcnt=5 DonorID:31)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 91,215,0
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0407 Hotspot_Percentile=5 GSM=GSM621678 dateUnrestricted=2011-08-12
track RSM_H3K9me3_30e
bigDataUrl RSM_H3K9me3_30.bigWig
shortLabel RSM H3K9me3 30
longLabel Rectal Smooth Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0815 Pcnt=25 DonorID:30)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 87,215,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0815 Hotspot_Percentile=25 GSM=GSM621660 dateUnrestricted=2011-08-12
track SM_H3K9me3_19e
bigDataUrl SM_H3K9me3_19.bigWig
shortLabel SM H3K9me3 19
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1044 Pcnt=36 DonorID:19)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 83,215,0
metadata collection_method=surgery donor_health_status=NA molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=19 biomaterial_provider="MGH Pathology" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1044 Hotspot_Percentile=36 GSM=GSM621632 dateUnrestricted=2011-08-12
track SM_H3K9me3_62e
bigDataUrl SM_H3K9me3_62.bigWig
shortLabel SM H3K9me3 62
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0487 Pcnt=8 DonorID:62)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 79,215,0
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0487 Hotspot_Percentile=8 GSM=GSM621681 dateUnrestricted=2011-08-12
track SM_H3K9me3_63e
bigDataUrl SM_H3K9me3_63.bigWig
shortLabel SM H3K9me3 63
longLabel Skeletal Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0518 Pcnt=12 DonorID:63)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 75,215,0
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0518 Hotspot_Percentile=12 GSM=GSM621690 dateUnrestricted=2011-08-12
track SSM_H3K9me3_28e
bigDataUrl SSM_H3K9me3_28.bigWig
shortLabel SSM H3K9me3 28
longLabel Stomach Smooth Muscle H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0863 Pcnt=31 DonorID:28)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 71,215,0
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0863 Hotspot_Percentile=31 GSM=GSM621631 dateUnrestricted=2011-08-12
track Th17_H3K9me3_20e
bigDataUrl Th17_H3K9me3_20.bigWig
shortLabel Th17 H3K9me3 20
longLabel Th17 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1903 Pcnt=63 DonorID:20)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 67,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=NA passage_if_expanded=NA cell_type=Th17 donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1903 Hotspot_Percentile=63 GSM=GSM621428 dateUnrestricted=2011-08-12
track Treg_H3K9me3_20e
bigDataUrl Treg_H3K9me3_20.bigWig
shortLabel Treg H3K9me3 20
longLabel Treg Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1752 Pcnt=53 DonorID:20)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 63,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers="CD4+ CD25high IL7R-" passage_if_expanded=NA cell_type=Treg donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=20 biomaterial_provider="Whitehead Institute" donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1752 Hotspot_Percentile=53 GSM=GSM621389 dateUnrestricted=2011-08-12
track iPS15b_H3K9me3_0732e
bigDataUrl iPS15b_H3K9me3_0732.bigWig
shortLabel iPS15b H3K9me3 32
longLabel iPS 15b H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2184 Pcnt=75 Library:Solexa-20732)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 59,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR sex=Female batch=0/0/00 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2184 Hotspot_Percentile=75 GSM=GSM537691 dateUnrestricted=2011-01-28
track iPS18c_H3K9me3_9774e
bigDataUrl iPS18c_H3K9me3_9774.bigWig
shortLabel iPS18c H3K9me3 74
longLabel iPS 18c H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2451 Pcnt=78 Library:Solexa-19774)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 55,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27 medium=KSR sex=Female batch=11/13/09 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2451 Hotspot_Percentile=78 GSM=GSM537678 dateUnrestricted=2011-01-28
track iPS20b_H3K9me3_0765e
bigDataUrl iPS20b_H3K9me3_0765.bigWig
shortLabel iPS20b H3K9me3 65
longLabel iPS 20b H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1839 Pcnt=58 Library:Solexa-20765)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 51,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR sex=Male batch=0/0/00 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1839 Hotspot_Percentile=58 GSM=GSM537688 dateUnrestricted=2011-01-28
track ESI3_H3K9me3_5475e
bigDataUrl ESI3_H3K9me3_5475.bigWig
shortLabel ESI3 H3K9me3 75
longLabel ES-I3 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1778 Pcnt=54 Library:Solexa-15475)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 47,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=49 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1778 Hotspot_Percentile=54 GSM=GSM537664 dateUnrestricted=2011-01-28
track ESI3_H3K9me3_6494e
bigDataUrl ESI3_H3K9me3_6494.bigWig
shortLabel ESI3 H3K9me3 94
longLabel ES-I3 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.0703 Pcnt=24 Library:Solexa-12683/Solexa-16494)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 43,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45 medium=TESR sex=Female batch=4/29/09 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.0703 Hotspot_Percentile=24 GSM=GSM537625 dateUnrestricted=2011-02-03
track ESWA7_H3K9me3_2613e
bigDataUrl ESWA7_H3K9me3_2613.bigWig
shortLabel ESWA7 H3K9me3 13
longLabel ES-WA7 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSF (Hotspot_Score=0.1543 Pcnt=47 Library:Solexa-12613)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 39,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=46 medium=KSR sex=Female batch=12/25/08 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1543 Hotspot_Percentile=47 GSM=GSM537639 dateUnrestricted=2011-01-28
track IMR90_H3K9me3_104e
bigDataUrl IMR90_H3K9me3_104.bigWig
shortLabel IMR90 H3K9me3 04
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3143 Pcnt=88 Library:YL104)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 35,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.3143 Hotspot_Percentile=88 GSM=GSM521914 dateUnrestricted=2010-12-22
track IMR90_H3K9me3_224e
bigDataUrl IMR90_H3K9me3_224.bigWig
shortLabel IMR90 H3K9me3 24
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2682 Pcnt=85 Library:LL224)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 31,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2682 Hotspot_Percentile=85 GSM=GSM469974 dateUnrestricted=2010-10-07
track IMR90_H3K9me3_K06e
bigDataUrl IMR90_H3K9me3_K06.bigWig
shortLabel IMR90 H3K9me3 06
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1913 Pcnt=64 Library:SK06)
type bigWig 0 90000
parent containeredacc2H3K9me3
color 27,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=Ab8896 chip_antibody_lot=484099 Hotspot_Score=0.1913 Hotspot_Percentile=64 GSM=GSM521913 dateUnrestricted=2010-12-22
track containeredacc2MeDIP
container multiWig
superTrack edaccContainerbyExperiment
shortLabel MeDIP Summary
longLabel EDACC Release II MeDIP Summary for 24 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_35e
bigDataUrl BLEC_MeDIP_35.bigWig
shortLabel BLEC MeDIP 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4531 Pcnt=87 DonorID:NA)
type bigWig 0 90000
parent containeredacc2MeDIP
color 245,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Hlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4531 Hotspot_Percentile=87 GSM=GSM493615 dateUnrestricted=2010-12-22
track BLEC_MeDIP_37e
bigDataUrl BLEC_MeDIP_37.bigWig
shortLabel BLEC MeDIP 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2494 Pcnt=16 DonorID:RM037)
type bigWig 0 90000
parent containeredacc2MeDIP
color 235,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM037 donor_age="39 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2494 Hotspot_Percentile=16 GSM=GSM613864 dateUnrestricted=2011-07-28
track BLEC_MeDIP_66e
bigDataUrl BLEC_MeDIP_66.bigWig
shortLabel BLEC MeDIP 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.291 Pcnt=33 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MeDIP
color 225,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=8060 Hotspot_Score=0.291 Hotspot_Percentile=33 GSM=GSM613856 dateUnrestricted=2011-07-28
track BLEC_MeDIP_70e
bigDataUrl BLEC_MeDIP_70.bigWig
shortLabel BLEC MeDIP 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2634 Pcnt=20 DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MeDIP
color 215,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2634 Hotspot_Percentile=20 GSM=GSM613843 dateUnrestricted=2011-07-28
#track BLEC_MeDIP_71e
#bigDataUrl BLEC_MeDIP_71.bigWig
#shortLabel BLEC MeDIP 71
#longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4128 Pcnt=79)
#type bigWig 0 90000
#parent containeredacc2MeDIP
#color 205,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4128 Hotspot_Percentile=79 GSM=GSM613852 dateUnrestricted=
track BMC_MeDIP_35e
bigDataUrl BMC_MeDIP_35.bigWig
shortLabel BMC MeDIP 35
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4554 Pcnt=91 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2MeDIP
color 195,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Myoepithelial" markers=CD10+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4554 Hotspot_Percentile=91 GSM=GSM543017 dateUnrestricted=2011-02-17
track BMC_MeDIP_66e
bigDataUrl BMC_MeDIP_66.bigWig
shortLabel BMC MeDIP 66
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1854 Pcnt=8 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MeDIP
color 185,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1854 Hotspot_Percentile=8 GSM=GSM613857 dateUnrestricted=2011-07-28
track BMC_MeDIP_70e
bigDataUrl BMC_MeDIP_70.bigWig
shortLabel BMC MeDIP 70
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3369 Pcnt=45 DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MeDIP
color 175,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3369 Hotspot_Percentile=45 GSM=GSM613846 dateUnrestricted=2011-07-28
#track BMC_MeDIP_71e
#bigDataUrl BMC_MeDIP_71.bigWig
#shortLabel BMC MeDIP 71
#longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3537 Pcnt=54)
#type bigWig 0 90000
#parent containeredacc2MeDIP
#color 165,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3537 Hotspot_Percentile=54 GSM=GSM613850 dateUnrestricted=
track BSC_MeDIP_35e
bigDataUrl BSC_MeDIP_35.bigWig
shortLabel BSC MeDIP 35
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4841 Pcnt=100 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2MeDIP
color 155,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Breast stem cell" markers=CD73+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4841 Hotspot_Percentile=100 GSM=GSM543019 dateUnrestricted=2011-02-17
track BSC_MeDIP_66e
bigDataUrl BSC_MeDIP_66.bigWig
shortLabel BSC MeDIP 66
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1738 Pcnt=4 DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MeDIP
color 145,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1738 Hotspot_Percentile=4 GSM=GSM613859 dateUnrestricted=2011-07-28
track BSC_MeDIP_70e
bigDataUrl BSC_MeDIP_70.bigWig
shortLabel BSC MeDIP 70
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3101 Pcnt=41 DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MeDIP
color 135,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3101 Hotspot_Percentile=41 GSM=GSM613847 dateUnrestricted=2011-07-28
track BSC_MeDIP_71e
bigDataUrl BSC_MeDIP_71.bigWig
shortLabel BSC MeDIP 71
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2697 Pcnt=25 DonorID:RM071)
type bigWig 0 90000
parent containeredacc2MeDIP
color 125,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2697 Hotspot_Percentile=25 GSM=GSM613853 dateUnrestricted=2011-07-28
track Bv_MeDIP_35e
bigDataUrl Bv_MeDIP_35.bigWig
shortLabel Bv MeDIP 35
longLabel Breast vHMEC DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4648 Pcnt=95 DonorID:RM035)
type bigWig 0 90000
parent containeredacc2MeDIP
color 115,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543021 dateUnrestricted=2011-02-17
track CD4M_MeDIP_03e
bigDataUrl CD4M_MeDIP_03.bigWig
shortLabel CD4M MeDIP 03
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.201 Pcnt=12 DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MeDIP
color 105,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.201 Hotspot_Percentile=12 GSM=GSM613862 dateUnrestricted=2011-07-28
track CD4M_MeDIP_07e
bigDataUrl CD4M_MeDIP_07.bigWig
shortLabel CD4M MeDIP 07
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3391 Pcnt=50 DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MeDIP
color 95,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3391 Hotspot_Percentile=50 GSM=GSM613914 dateUnrestricted=2011-07-28
track CD4N_MeDIP_03e
bigDataUrl CD4N_MeDIP_03.bigWig
shortLabel CD4N MeDIP 03
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2893 Pcnt=29 DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MeDIP
color 85,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2893 Hotspot_Percentile=29 GSM=GSM543025 dateUnrestricted=2011-02-17
track CD4N_MeDIP_07e
bigDataUrl CD4N_MeDIP_07.bigWig
shortLabel CD4N MeDIP 07
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4174 Pcnt=83 DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MeDIP
color 75,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4174 Hotspot_Percentile=83 GSM=GSM613913 dateUnrestricted=2011-07-28
track CD8N_MeDIP_03e
bigDataUrl CD8N_MeDIP_03.bigWig
shortLabel CD8N MeDIP 03
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3667 Pcnt=58 DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MeDIP
color 65,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3667 Hotspot_Percentile=58 GSM=GSM543027 dateUnrestricted=2011-02-17
track CD8N_MeDIP_07e
bigDataUrl CD8N_MeDIP_07.bigWig
shortLabel CD8N MeDIP 07
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4017 Pcnt=75 DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MeDIP
color 55,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4017 Hotspot_Percentile=75 GSM=GSM613917 dateUnrestricted=2011-07-28
track H1_MeDIP_03e
bigDataUrl H1_MeDIP_03.bigWig
shortLabel H1 MeDIP 03
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3021 Pcnt=37 DonorID:NA)
type bigWig 0 90000
parent containeredacc2MeDIP
color 45,62,150
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3021 Hotspot_Percentile=37 GSM=GSM456941 dateUnrestricted=2010-12-22
track H1_MeDIP_76e
bigDataUrl H1_MeDIP_76.bigWig
shortLabel H1 MeDIP 76
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3687 Pcnt=62 Library:HS1376)
type bigWig 0 90000
parent containeredacc2MeDIP
color 35,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=pluripotent differentiation_stage=undifferentiated differentiation_method=NA passage=30 medium="CDI protocol" Sex=Male batch=#1 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=5ug medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3687 Hotspot_Percentile=62 GSM=GSM543016 dateUnrestricted=2011-07-28
track PBM_MeDIP_03e
bigDataUrl PBM_MeDIP_03.bigWig
shortLabel PBM MeDIP 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3758 Pcnt=66 DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MeDIP
color 25,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3758 Hotspot_Percentile=66 GSM=GSM543023 dateUnrestricted=2011-02-17
track PBM_MeDIP_07e
bigDataUrl PBM_MeDIP_07.bigWig
shortLabel PBM MeDIP 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.0094 Pcnt=30 DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MeDIP
color 15,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.0094 Hotspot_Percentile=30 GSM=GSM613911 dateUnrestricted=2011-07-28
track containeredacc2MRE
container multiWig
superTrack edaccContainerbyExperiment
shortLabel MRE Summary
longLabel EDACC Release II MRE Summary for 28 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MRE_35e
bigDataUrl BLEC_MRE_35.bigWig
shortLabel BLEC MRE 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 147,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=97.14 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=32 GSM=GSM493620 dateUnrestricted=2010-10-07
track BLEC_MRE_37e
bigDataUrl BLEC_MRE_37.bigWig
shortLabel BLEC MRE 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 142,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA GSM=GSM493617 dateUnrestricted=2010-10-07
track BLEC_MRE_66e
bigDataUrl BLEC_MRE_66.bigWig
shortLabel BLEC MRE 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MRE
color 137,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=78 GSM=GSM613833 dateUnrestricted=2011-07-28
track BLEC_MRE_70e
bigDataUrl BLEC_MRE_70.bigWig
shortLabel BLEC MRE 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MRE
color 132,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-336 bp" Percent_Reads_Mapping_To_Restriction_Fragments=96.3 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=25 GSM=GSM613818 dateUnrestricted=2011-07-28
track BLEC_MRE_71e
bigDataUrl BLEC_MRE_71.bigWig
shortLabel BLEC MRE 71
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containeredacc2MRE
color 127,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="55-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.88 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=39 GSM=GSM613826 dateUnrestricted=2011-07-28
track BMC_MRE_35e
bigDataUrl BMC_MRE_35.bigWig
shortLabel BMC MRE 35
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 122,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="myo epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=95.83 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=21 GSM=GSM493624 dateUnrestricted=2010-10-07
track BMC_MRE_66e
bigDataUrl BMC_MRE_66.bigWig
shortLabel BMC MRE 66
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MRE
color 117,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.79 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=60 GSM=GSM613834 dateUnrestricted=2011-07-28
track BMC_MRE_70e
bigDataUrl BMC_MRE_70.bigWig
shortLabel BMC MRE 70
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MRE
color 112,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-296 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.93 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=42 GSM=GSM613821 dateUnrestricted=2011-07-28
track BMC_MRE_71e
bigDataUrl BMC_MRE_71.bigWig
shortLabel BMC MRE 71
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containeredacc2MRE
color 107,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=53-282bp Percent_Reads_Mapping_To_Restriction_Fragments=98.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=50 GSM=GSM613908 dateUnrestricted=2011-07-28
track BSC_MRE_35e
bigDataUrl BSC_MRE_35.bigWig
shortLabel BSC MRE 35
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 102,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="stem cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=96.86 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=28 GSM=GSM493626 dateUnrestricted=2010-10-07
track BSC_MRE_66e
bigDataUrl BSC_MRE_66.bigWig
shortLabel BSC MRE 66
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containeredacc2MRE
color 97,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.12 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=46 GSM=GSM613837 dateUnrestricted=2011-07-28
track BSC_MRE_70e
bigDataUrl BSC_MRE_70.bigWig
shortLabel BSC MRE 70
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containeredacc2MRE
color 92,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=1.5ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=33-265bp Percent_Reads_Mapping_To_Restriction_Fragments=97.68 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=35 GSM=GSM613907 dateUnrestricted=2011-07-28
track BSC_MRE_71e
bigDataUrl BSC_MRE_71.bigWig
shortLabel BSC MRE 71
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containeredacc2MRE
color 87,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.09 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=67 GSM=GSM613829 dateUnrestricted=2011-07-28
track Bv_MRE_35e
bigDataUrl Bv_MRE_35.bigWig
shortLabel Bv MRE 35
longLabel Breast vHMEC DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containeredacc2MRE
color 82,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" mre_protocol="Costello Lab Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=100-300bp Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543007 dateUnrestricted=2011-02-17
track CD4M_MRE_03e
bigDataUrl CD4M_MRE_03.bigWig
shortLabel CD4M MRE 03
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MRE
color 77,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="1.5 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="50-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=95.8 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=17 GSM=GSM613842 dateUnrestricted=2011-07-28
track CD4M_MRE_07e
bigDataUrl CD4M_MRE_07.bigWig
shortLabel CD4M MRE 07
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MRE
color 72,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=44-299bp Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=75 GSM=GSM613903 dateUnrestricted=2011-07-28
track CD4N_MRE_03e
bigDataUrl CD4N_MRE_03.bigWig
shortLabel CD4N MRE 03
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MRE
color 67,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Hotspot_Score=0.2771 Hotspot_Percentile=60 GSM=GSM543011 dateUnrestricted=2011-02-17
track CD4N_MRE_07e
bigDataUrl CD4N_MRE_07.bigWig
shortLabel CD4N MRE 07
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MRE
color 62,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=38-271bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=92 GSM=GSM613901 dateUnrestricted=2011-07-28
track CD4N_MRE_09e
bigDataUrl CD4N_MRE_09.bigWig
shortLabel CD4N MRE 09
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containeredacc2MRE
color 57,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=34-284bp Percent_Reads_Mapping_To_Restriction_Fragments=99.59 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=96 GSM=GSM613920 dateUnrestricted=2011-07-28
track CD8N_MRE_03e
bigDataUrl CD8N_MRE_03.bigWig
shortLabel CD8N MRE 03
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MRE
color 52,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=99.39 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=85 GSM=GSM543013 dateUnrestricted=2011-02-17
track CD8N_MRE_07e
bigDataUrl CD8N_MRE_07.bigWig
shortLabel CD8N MRE 07
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MRE
color 47,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=42-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.36 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=82 GSM=GSM613905 dateUnrestricted=2011-07-28
track CD8N_MRE_09e
bigDataUrl CD8N_MRE_09.bigWig
shortLabel CD8N MRE 09
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containeredacc2MRE
color 42,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=30-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=89 GSM=GSM613923 dateUnrestricted=2011-07-28
track H1_MRE_52e
bigDataUrl H1_MRE_52.bigWig
shortLabel H1 MRE 52
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 37,251,152
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a Sex=Male experiment_type="DNA Methylation" mre_protocol="costello lab protocol" mre_protocol_chromatin_amount=44ug mre_protocol_restriction_enzyme=HpaII,Hin6I,AciI mre_protocol_size_fraction=100-300bp Percent_Reads_Mapping_To_Restriction_Fragments=82.85 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=3 GSM=GSM428286 dateUnrestricted=2010-10-07
track H1_MRE_53e
bigDataUrl H1_MRE_53.bigWig
shortLabel H1 MRE 53
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containeredacc2MRE
color 32,251,152
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=89.07 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=7 GSM=GSM450236 dateUnrestricted=2010-10-07
track H1_MRE_73e
bigDataUrl H1_MRE_73.bigWig
shortLabel H1 MRE 73
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (Library:HS1473)
type bigWig 0 90000
parent containeredacc2MRE
color 27,251,152
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage="pluripotent" differentiation_stage=undifferentiated differentiation_method=NA passage="32" medium="CDI Protocol" Sex=Male experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="1ug" mre_protocol_restriction_enzyme="MspI" mre_protocol_size_fraction="100-300bp" Percent_Reads_Mapping_To_Restriction_Fragments=90.19 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=10 GSM=GSM543005 dateUnrestricted=2011-07-21
track PBM_MRE_03e
bigDataUrl PBM_MRE_03.bigWig
shortLabel PBM MRE 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containeredacc2MRE
color 22,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=98.99 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=64 GSM=GSM543009 dateUnrestricted=2011-02-17
track PBM_MRE_07e
bigDataUrl PBM_MRE_07.bigWig
shortLabel PBM MRE 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containeredacc2MRE
color 17,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=48-265bp Percent_Reads_Mapping_To_Restriction_Fragments=99.15 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=71 GSM=GSM613898 dateUnrestricted=2011-07-28
track PBM_MRE_09e
bigDataUrl PBM_MRE_09.bigWig
shortLabel PBM MRE 09
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containeredacc2MRE
color 12,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-298bp Percent_Reads_Mapping_To_Restriction_Fragments=99.61 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=100 GSM=GSM613919 dateUnrestricted=2011-07-28
track containeredacc2BS
container multiWig
superTrack edaccContainerbyExperiment
shortLabel BS Summary
longLabel EDACC Release II BS Summary for 3 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1BMP4_Bisulfite_combinede
bigDataUrl H1BMP4_Bisulfite_combined.bigWig
shortLabel H1BMP4 BS 1a
longLabel H1-BMP4 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_h1+bmp4_r1a)
type bigWig 0 90000
parent containeredacc2BS
color 0,0,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA differentiation_stage="embryonic stem cell differentiated by treatment with BMP4" differentiation_method="H1 cells were cultured in TeSR containing 50 ng/ml BMP4 for 5 days" passage="27, including 16 passages in TeSR" medium=TeSR Sex=Male batch="Replicate 1" experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions" extraction_protocol_type_of_sonicator="Covaris S2" extraction_protocol_sonication_cycles="Standard fragment express, 6 cycles" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range=100-150 dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="16ËšC for 16 hours with T4 DNA ligase (New England Biolabs)" dna_preparation_post-ligation_fragment_size_selection="Two rounds of purification with AMPure XP beads (Agencourt)" bisulfite_conversion_protocol="Invitrogen MethylCode" bisulfite_conversion_percent="99.5% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc=">One third of the adapter-ligated, bisulfite converted DNA was used in each of three 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95ËšC 2 min; 98ËšC 30 sec, 4 cycles of 98ËšC 15 sec, 60ËšC 30 sec, 72ËšC 4 min; 72ËšC 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Two rounds of purification with AMPure XP beads (Agencourt)" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.21 GSM=GSM602251 dateUnrestricted=2011-07-07
track H1_BisulfiteSeq_ede
bigDataUrl H1_BisulfiteSeq_ed.bigWig
shortLabel H1 BS 2a
longLabel H1 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_h1_r2a)
type bigWig 0 90000
parent containeredacc2BS
color 0,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA batch=#1 differentiation_stage="embryonic stem cell" differentiation_method=NA passage=30 medium=TeSR sex=Male experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=97.24 GSM=GSM429321 dateUnrestricted=2010-07-13
track IMR90_BisulfiteSeq_ede
bigDataUrl IMR90_BisulfiteSeq_ed.bigWig
shortLabel IMR90 BS 1a
longLabel IMR90 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_imr90_r1a)
type bigWig 0 90000
parent containeredacc2BS
color 0,0,150
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=99.43 GSM=GSM432687 dateUnrestricted=2010-07-13
track containeredacc2RRBS
container multiWig
superTrack edaccContainerbyExperiment
shortLabel RRBS Summary
longLabel EDACC Release II RRBS Summary for 47 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track AK_RRBS_27e
bigDataUrl AK_RRBS_27.bigWig
shortLabel AK RRBS 27
longLabel Adult_Kidney DNA Methylation by RRBS Signal from REMC/Broad (DonorID:27)
type bigWig 0 90000
parent containeredacc2RRBS
color 250,140,105
metadata collection_method=surgery donor_health_status=""normal, renal cell CA (clear cell type)"" molecule="genomic DNA" disease=none tissue_type="Adult Kidney" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=kidney donor_id=27 biomaterial_provider="MGH Pathology" donor_age=67 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.74 GSM=GSM621713 dateUnrestricted=2011-08-11
track CD19_RRBS__00e
bigDataUrl CD19_RRBS__00.bigWig
shortLabel CD19 RRBS 0
longLabel CD19 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD19_0/0/00)
type bigWig 0 90000
parent containeredacc2RRBS
color 245,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD19 Primary Cells" markers=CD19+ donor_id=CD19_0/0/00 donor_age=NA donor_health_status=none donor_sex=Female donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.37 GSM=GSM621560 dateUnrestricted=2011-08-11
track CD34_RRBS_515e
bigDataUrl CD34_RRBS_515.bigWig
shortLabel CD34 RRBS 14
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
type bigWig 0 90000
parent containeredacc2RRBS
color 240,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.52 GSM=GSM621561 dateUnrestricted=2011-08-11
track CD34_RRBS_533e
bigDataUrl CD34_RRBS_533.bigWig
shortLabel CD34 RRBS 32
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
type bigWig 0 90000
parent containeredacc2RRBS
color 235,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.28 GSM=GSM621559 dateUnrestricted=2011-08-11
track CM_RRBS_32e
bigDataUrl CM_RRBS_32.bigWig
shortLabel CM RRBS 32
longLabel Colonic_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:32)
type bigWig 0 90000
parent containeredacc2RRBS
color 230,140,105
metadata collection_method=surgery donor_health_status=""normal mucosa, adeno. CA of Cecum"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=colon donor_id=32 biomaterial_provider="MGH Pathology" donor_age=73 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.86 GSM=GSM621728 dateUnrestricted=2011-08-11
track DM_RRBS_61e
bigDataUrl DM_RRBS_61.bigWig
shortLabel DM RRBS 61
longLabel Duodenum_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:61)
type bigWig 0 90000
parent containeredacc2RRBS
color 225,140,105
metadata collection_method=surgery donor_health_status=""NL mucosa,... Pancreatitis/IPMN"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=duodenum donor_id=61 biomaterial_provider="MGH Pathology" donor_age="76 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.68 GSM=GSM621729 dateUnrestricted=2011-08-11
track ESI3_RRBS_349e
bigDataUrl ESI3_RRBS_349.bigWig
shortLabel ESI3 RRBS 48
longLabel ES-I3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11956/Solexa-11957)
type bigWig 0 90000
parent containeredacc2RRBS
color 220,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hES-I3 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage="49 or 45" medium="KSR or TESR" Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.96 GSM=GSM621348 dateUnrestricted=2011-08-11
track ESI3_RRBS_369e
bigDataUrl ESI3_RRBS_369.bigWig
shortLabel ESI3 RRBS 68
longLabel ES-I3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13317/Solexa-13235)
type bigWig 0 90000
parent containeredacc2RRBS
color 215,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line="hES I3 TESR" lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=45.0 medium=TESR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.89 GSM=GSM621345 dateUnrestricted=2011-08-11
track ESWA7_RRBS_351e
bigDataUrl ESWA7_RRBS_351.bigWig
shortLabel ESWA7 RRBS 50
longLabel ES-WA7 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11958/Solexa-11959)
type bigWig 0 90000
parent containeredacc2RRBS
color 210,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=44.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.3 GSM=GSM621347 dateUnrestricted=2011-08-11
track ESWA7_RRBS_528e
bigDataUrl ESWA7_RRBS_528.bigWig
shortLabel ESWA7 RRBS 28
longLabel ES-WA7 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17914)
type bigWig 0 90000
parent containeredacc2RRBS
color 205,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=WA-7 lineage="embrionic stem cell" differentiation_stage=undifferentiated differentiation_method=none passage=48.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=40-160 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.64 GSM=GSM621353 dateUnrestricted=2011-08-11
track H1_RRBS_361e
bigDataUrl H1_RRBS_361.bigWig
shortLabel H1 RRBS 60
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13232/Solexa-13233)
type bigWig 0 90000
parent containeredacc2RRBS
color 200,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR Sex=Male batch=39805 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.75 GSM=GSM621357 dateUnrestricted=2011-08-11
track H1_RRBS_535e
bigDataUrl H1_RRBS_535.bigWig
shortLabel H1 RRBS 34
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS534/RRBS535)
type bigWig 0 90000
parent containeredacc2RRBS
color 195,140,105
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=p32 line=H1 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.56 GSM=GSM621763 dateUnrestricted=2011-08-11
track H1_RRBS_678e
bigDataUrl H1_RRBS_678.bigWig
shortLabel H1 RRBS 77
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS677/RRBS678)
type bigWig 0 90000
parent containeredacc2RRBS
color 190,140,105
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage=p25 line="Human ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-290 or 170-430" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.8 GSM=GSM621765 dateUnrestricted=2011-08-11
track H1_RRBS_779e
bigDataUrl H1_RRBS_779.bigWig
shortLabel H1 RRBS 76
longLabel H1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS776/RRBS777/RRBS778/RRBS779)
type bigWig 0 90000
parent containeredacc2RRBS
color 185,140,105
metadata lineage="embrionic stem cell" medium=TESR molecule="genomic DNA" disease=none passage="p37 or p38" line="H1p37 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Cellular Dynamics" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.65 GSM=GSM621705 dateUnrestricted=2011-08-11
track HUES1_RRBS_771e
bigDataUrl HUES1_RRBS_771.bigWig
shortLabel HUES1 RRBS 68
longLabel HUES1 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS768/RRBS769/RRBS770/RRBS771)
type bigWig 0 90000
parent containeredacc2RRBS
color 180,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage="p28 or p29" line="HUES_1p28 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.9 GSM=GSM621734 dateUnrestricted=2011-08-11
track HUES28_RRBS_543e
bigDataUrl HUES28_RRBS_543.bigWig
shortLabel HUES28 RRBS 42
longLabel HUES28 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS542/RRBS543)
type bigWig 0 90000
parent containeredacc2RRBS
color 175,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES28 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.08 GSM=GSM621606 dateUnrestricted=2011-08-11
track HUES3_RRBS_571e
bigDataUrl HUES3_RRBS_571.bigWig
shortLabel HUES3 RRBS 69
longLabel HUES3 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS569/RRBS571)
type bigWig 0 90000
parent containeredacc2RRBS
color 170,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=HUES3 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="120-230 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="30-140 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.86 GSM=GSM621767 dateUnrestricted=2011-08-11
track HUES48_RRBS_549e
bigDataUrl HUES48_RRBS_549.bigWig
shortLabel HUES48 RRBS 48
longLabel HUES48 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS548/RRBS549)
type bigWig 0 90000
parent containeredacc2RRBS
color 165,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES48 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621598 dateUnrestricted=2011-08-11
track HUES49_RRBS_557e
bigDataUrl HUES49_RRBS_557.bigWig
shortLabel HUES49 RRBS 56
longLabel HUES49 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS556/RRBS557)
type bigWig 0 90000
parent containeredacc2RRBS
color 160,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES49 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.35 GSM=GSM621603 dateUnrestricted=2011-08-11
track HUES53_RRBS_551e
bigDataUrl HUES53_RRBS_551.bigWig
shortLabel HUES53 RRBS 50
longLabel HUES53 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS550/RRBS551)
type bigWig 0 90000
parent containeredacc2RRBS
color 155,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p17 line=HUES53 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.0 GSM=GSM621601 dateUnrestricted=2011-08-11
track HUES62_RRBS_517e
bigDataUrl HUES62_RRBS_517.bigWig
shortLabel HUES62 RRBS 16
longLabel HUES62 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS516/RRBS517)
type bigWig 0 90000
parent containeredacc2RRBS
color 150,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p14 line=HUES62 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.37 GSM=GSM621595 dateUnrestricted=2011-08-11
track HUES63_RRBS_519e
bigDataUrl HUES63_RRBS_519.bigWig
shortLabel HUES63 RRBS 19
longLabel HUES63 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS519)
type bigWig 0 90000
parent containeredacc2RRBS
color 145,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES63 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=90-260 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.56 GSM=GSM621591 dateUnrestricted=2011-08-11
track HUES64_RRBS_521e
bigDataUrl HUES64_RRBS_521.bigWig
shortLabel HUES64 RRBS 20
longLabel HUES64 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS520/RRBS521)
type bigWig 0 90000
parent containeredacc2RRBS
color 140,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES64 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.11 GSM=GSM621594 dateUnrestricted=2011-08-11
track HUES65_RRBS_553e
bigDataUrl HUES65_RRBS_553.bigWig
shortLabel HUES65 RRBS 52
longLabel HUES65 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS552/RRBS553)
type bigWig 0 90000
parent containeredacc2RRBS
color 135,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p19 line=HUES65 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.87 GSM=GSM621599 dateUnrestricted=2011-08-11
track HUES66_RRBS_554e
bigDataUrl HUES66_RRBS_554.bigWig
shortLabel HUES66 RRBS 54
longLabel HUES66 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS554)
type bigWig 0 90000
parent containeredacc2RRBS
color 130,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p20 line=HUES66 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=130-250 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=40-160 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.65 GSM=GSM621592 dateUnrestricted=2011-08-11
track HUES6_RRBS_537e
bigDataUrl HUES6_RRBS_537.bigWig
shortLabel HUES6 RRBS 36
longLabel HUES6 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS536/RRBS537)
type bigWig 0 90000
parent containeredacc2RRBS
color 125,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p25 line="HUES 6" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-270 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-180 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.85 GSM=GSM621700 dateUnrestricted=2011-08-11
track HUES8_RRBS_775e
bigDataUrl HUES8_RRBS_775.bigWig
shortLabel HUES8 RRBS 72
longLabel HUES8 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS772/RRBS772/RRBS775)
type bigWig 0 90000
parent containeredacc2RRBS
color 120,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage="p29 or p30" line="HUES_8p29 ES" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="148-320 or 200-420" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-200 or 80-300" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.19 GSM=GSM621709 dateUnrestricted=2011-08-11
track HUES9_RRBS_541e
bigDataUrl HUES9_RRBS_541.bigWig
shortLabel HUES9 RRBS 40
longLabel HUES9 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS540/RRBS541)
type bigWig 0 90000
parent containeredacc2RRBS
color 115,140,105
metadata lineage="embrionic stem cell" medium=KSR molecule="genomic DNA" disease=none passage=p21 line=HUES9 differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.86 GSM=GSM621718 dateUnrestricted=2011-08-11
track PI_RRBS__00e
bigDataUrl PI_RRBS__00.bigWig
shortLabel PI RRBS 0
longLabel Pancreatic_Islets DNA Methylation by RRBS Signal from REMC/Broad (DonorID:pancreaticisletsnormal_0/0/00)
type bigWig 0 90000
parent containeredacc2RRBS
color 110,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Islet Cell Resource Center" biomaterial_type="Primary Cell" cell_type="Pancreatic Islets" markers=none donor_id="pancreatic islets normal_0/0/00" donor_age=NA donor_health_status=none donor_sex=Male donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.45 GSM=GSM621567 dateUnrestricted=2011-08-11
track RM_RRBS_31e
bigDataUrl RM_RRBS_31.bigWig
shortLabel RM RRBS 31
longLabel Rectal_Mucosa DNA Methylation by RRBS Signal from REMC/Broad (DonorID:31)
type bigWig 0 90000
parent containeredacc2RRBS
color 105,140,105
metadata collection_method=surgery donor_health_status=""normal mucosa, diverticular disease"" molecule="genomic DNA" disease=none tissue_type=mucosa passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=31 biomaterial_provider="MGH Pathology" donor_age=61 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.89 GSM=GSM621702 dateUnrestricted=2011-08-11
track RSM_RRBS_30e
bigDataUrl RSM_RRBS_30.bigWig
shortLabel RSM RRBS 30
longLabel Rectal_Smooth_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:30)
type bigWig 0 90000
parent containeredacc2RRBS
color 100,140,105
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=rectum donor_id=30 biomaterial_provider="MGH Pathology" donor_age=50 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.97 GSM=GSM621730 dateUnrestricted=2011-08-11
track SMSM_RRBS_63e
bigDataUrl SMSM_RRBS_63.bigWig
shortLabel SM RRBS 63
longLabel Skeletal_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:63)
type bigWig 0 90000
parent containeredacc2RRBS
color 95,140,105
metadata collection_method=surgery donor_health_status=""NL muscle,... Osteomylitis - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Male biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=63 biomaterial_provider="MGH Pathology" donor_age="54 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=99.08 GSM=GSM621727 dateUnrestricted=2011-08-11
track SM_RRBS_62e
bigDataUrl SM_RRBS_62.bigWig
shortLabel SM RRBS 62
longLabel Skeletal_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:62)
type bigWig 0 90000
parent containeredacc2RRBS
color 90,140,105
metadata collection_method=surgery donor_health_status=""NL muscle,... PVD - BKA"" molecule="genomic DNA" disease=none tissue_type="Skeletal muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=unknown donor_id=62 biomaterial_provider="MGH Pathology" donor_age="72 years" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.77 GSM=GSM621726 dateUnrestricted=2011-08-11
track SSM_RRBS_28e
bigDataUrl SSM_RRBS_28.bigWig
shortLabel SSM RRBS 28
longLabel Stomach_Smooth_Muscle DNA Methylation by RRBS Signal from REMC/Broad (DonorID:28)
type bigWig 0 90000
parent containeredacc2RRBS
color 85,140,105
metadata collection_method=surgery donor_health_status="normal smooth muscle" molecule="genomic DNA" disease=none tissue_type="smooth muscle" passage_if_expanded=NA donor_ethnicity=white donor_sex=Female biomaterial_type="Primary Tissue" tissue_depot=stomach donor_id=28 biomaterial_provider="MGH Pathology" donor_age=84 bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection=148-440 bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range=28-320 experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.83 GSM=GSM621732 dateUnrestricted=2011-08-11
track iPS11a_RRBS_355e
bigDataUrl iPS11a_RRBS_355.bigWig
shortLabel iPS11a RRBS 54
longLabel iPS-11a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS354/RRBS355)
type bigWig 0 90000
parent containeredacc2RRBS
color 80,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p22 line="hiPS cells(3F)/11a(1)-P22" differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.34 GSM=GSM621719 dateUnrestricted=2011-08-11
track iPS11b_RRBS_421e
bigDataUrl iPS11b_RRBS_421.bigWig
shortLabel iPS11b RRBS 20
longLabel iPS-11b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS420/RRBS421)
type bigWig 0 90000
parent containeredacc2RRBS
color 75,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p13 line=hiPS-11b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.82 GSM=GSM621715 dateUnrestricted=2011-08-11
track iPS15b_RRBS_357e
bigDataUrl iPS15b_RRBS_357.bigWig
shortLabel iPS15b RRBS 56
longLabel iPS-15b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS356/RRBS357/Solexa-11964)
type bigWig 0 90000
parent containeredacc2RRBS
color 70,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=hiPS-15b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.97 GSM=GSM621721 dateUnrestricted=2011-08-11
track iPS15b_RRBS_523e
bigDataUrl iPS15b_RRBS_523.bigWig
shortLabel iPS15b RRBS 22
longLabel iPS-15b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17917/Solexa-17944)
type bigWig 0 90000
parent containeredacc2RRBS
color 65,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-15b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=33.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621557 dateUnrestricted=2011-08-11
track iPS17a_RRBS_419e
bigDataUrl iPS17a_RRBS_419.bigWig
shortLabel iPS17a RRBS 18
longLabel iPS-17a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS418/RRBS419)
type bigWig 0 90000
parent containeredacc2RRBS
color 60,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p14 line=hiPS-17a differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.1 GSM=GSM621699 dateUnrestricted=2011-08-11
track iPS17b_RRBS_590e
bigDataUrl iPS17b_RRBS_590.bigWig
shortLabel iPS17b RRBS 89
longLabel iPS-17b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS589/RRBS590)
type bigWig 0 90000
parent containeredacc2RRBS
color 55,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p32 line=hiPS-17b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-260 or 160-380" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-170 or 70-290" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.16 GSM=GSM621714 dateUnrestricted=2011-08-11
track iPS18a_RRBS_399e
bigDataUrl iPS18a_RRBS_399.bigWig
shortLabel iPS18a RRBS 98
longLabel iPS-18a Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS398/RRBS399)
type bigWig 0 90000
parent containeredacc2RRBS
color 50,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p30 line=hiPS-18a differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-140 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.52 GSM=GSM621696 dateUnrestricted=2011-08-11
track iPS18b_RRBS_367e
bigDataUrl iPS18b_RRBS_367.bigWig
shortLabel iPS18b RRBS 66
longLabel iPS-18b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS366/RRBS367)
type bigWig 0 90000
parent containeredacc2RRBS
color 45,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p27 line=hiPS-18b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.74 GSM=GSM621695 dateUnrestricted=2011-08-11
track iPS18c_RRBS_396e
bigDataUrl iPS18c_RRBS_396.bigWig
shortLabel iPS18c RRBS 96
longLabel iPS-18c Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-13943)
type bigWig 0 90000
parent containeredacc2RRBS
color 40,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-18c lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=27.0 medium=KSR Sex=Female batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=90-260 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.0 GSM=GSM621564 dateUnrestricted=2011-08-11
track iPS18c_RRBS_525e
bigDataUrl iPS18c_RRBS_525.bigWig
shortLabel iPS18c RRBS 24
longLabel iPS-18c Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS524/RRBS525)
type bigWig 0 90000
parent containeredacc2RRBS
color 35,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p36 line=hiPS-18c differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Female biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="40-160 or 90-260" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=97.9 GSM=GSM621725 dateUnrestricted=2011-08-11
track iPS20b_RRBS_353e
bigDataUrl iPS20b_RRBS_353.bigWig
shortLabel iPS20b RRBS 53
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-11961)
type bigWig 0 90000
parent containeredacc2RRBS
color 30,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=20.0 medium=KSR Sex=Male batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range=90-260 dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection=180-350 bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.11 GSM=GSM621552 dateUnrestricted=2011-08-11
track iPS20b_RRBS_527e
bigDataUrl iPS20b_RRBS_527.bigWig
shortLabel iPS20b RRBS 26
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:Solexa-17950/Solexa-17937)
type bigWig 0 90000
parent containeredacc2RRBS
color 25,140,105
metadata molecule="genomic DNA" disease=none biomaterial_provider="Harvard University" biomaterial_type="Cell Line" line=hiPS-20b lineage="induced pluripotent cells" differentiation_stage=undifferentiated differentiation_method=none passage=36.0 medium=KSR Sex=Male batch=0/0/00 experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=98.83 GSM=GSM621562 dateUnrestricted=2011-08-11
track iPS20b_RRBS_592e
bigDataUrl iPS20b_RRBS_592.bigWig
shortLabel iPS20b RRBS 91
longLabel iPS-20b Cell Line DNA Methylation by RRBS Signal from REMC/Broad (Library:RRBS591/RRBS592)
type bigWig 0 90000
parent containeredacc2RRBS
color 20,140,105
metadata lineage="induced pluripotent cells" medium=KSR molecule="genomic DNA" disease=none passage=p43 line=hiPS-20b differentiation_method=NA batch=NA biomaterial_type="Cell Line" differentiation_stage=undifferentiated Sex=Male biomaterial_provider="Harvard University" bisulfite_conversion_protocol="2x5hrs Epitect Kit" dna_preparation_initial_dna_qnty="20 ng" extraction_protocol_sonication_cycles=NA dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" dna_preparation_post-ligation_fragment_size_selection="118-260 or 160-380" bisulfite_conversion_percent=>99% extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" library_generation_pcr_primer_conc=25uM dna_preparation_fragment_size_range="28-170 or 70-290" experiment_type="DNA Methylation" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_product_isolation_protocol="Gel size selection" library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_number_cycles=15 extraction_protocol_type_of_sonicator=NA Bisulfite_Conversion_Percentage_Based_On_Mappings=98.29 GSM=GSM621735 dateUnrestricted=2011-08-11
track containeredacc2DNase
container multiWig
superTrack edaccContainerbyExperiment
shortLabel DNase Summary
longLabel EDACC Release II DNase Summary for 40 sample types
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track FAG_DNase_62e
bigDataUrl FAG_DNase_62.bigWig
shortLabel FAG DNase 62 28
longLabel Fetal Adrenal Gland DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4016 Pcnt=42 DonorID:H-22662)
type bigWig 0 90000
parent containeredacc2DNase
color 0,98,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal adrenal" tissue_depot=UW collection_method=fetal donor_id=H-22662 donor_age="96 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4016 Hotspot_Percentile=42 GSM=GSM530653 dateUnrestricted=2011-01-28
track FB_DNase_10_72e
bigDataUrl FB_DNase_10_72.bigWig
shortLabel FB DNase 10 72
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6461 Pcnt=97 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2DNase
color 0,96,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22510 donor_age="122 days" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6461 Hotspot_Percentile=97 GSM=GSM530651 dateUnrestricted=2011-01-28
track FB_DNase_10_77e
bigDataUrl FB_DNase_10_77.bigWig
shortLabel FB DNase 10 77
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.559 Pcnt=85 DonorID:H-22510)
type bigWig 0 90000
parent containeredacc2DNase
color 0,94,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22510 donor_age="122 days" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.559 Hotspot_Percentile=85 GSM=GSM595913 dateUnrestricted=2011-06-21
track FB_DNase_11e
bigDataUrl FB_DNase_11.bigWig
shortLabel FB DNase 11 64
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5464 Pcnt=80 DonorID:H-22911)
type bigWig 0 90000
parent containeredacc2DNase
color 0,92,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-22911 donor_age="day 117" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5464 Hotspot_Percentile=80 GSM=GSM595920 dateUnrestricted=2011-06-21
track FB_DNase_66_17e
bigDataUrl FB_DNase_66_17.bigWig
shortLabel FB DNase 66 17
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3922 Pcnt=32 DonorID:H-23266)
type bigWig 0 90000
parent containeredacc2DNase
color 0,90,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3922 Hotspot_Percentile=32 GSM=GSM595922 dateUnrestricted=2011-06-21
track FB_DNase_66_18e
bigDataUrl FB_DNase_66_18.bigWig
shortLabel FB DNase 66 18
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4083 Pcnt=45 DonorID:H-23266)
type bigWig 0 90000
parent containeredacc2DNase
color 0,88,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4083 Hotspot_Percentile=45 GSM=GSM595923 dateUnrestricted=2011-06-21
track FB_DNase_84_03e
bigDataUrl FB_DNase_84_03.bigWig
shortLabel FB DNase 84 03
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5007 Pcnt=65 DonorID:H-23284)
type bigWig 0 90000
parent containeredacc2DNase
color 0,86,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5007 Hotspot_Percentile=65 GSM=GSM595926 dateUnrestricted=2011-06-21
track FB_DNase_84_15e
bigDataUrl FB_DNase_84_15.bigWig
shortLabel FB DNase 84 15
longLabel Fetal Brain DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5392 Pcnt=75 DonorID:H-23284)
type bigWig 0 90000
parent containeredacc2DNase
color 0,84,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal brain" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5392 Hotspot_Percentile=75 GSM=GSM595928 dateUnrestricted=2011-06-21
track FH_DNase_27e
bigDataUrl FH_DNase_27.bigWig
shortLabel FH DNase 27 10
longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3944 Pcnt=37 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2DNase
color 0,82,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal heart" tissue_depot=UW collection_method=fetal donor_id=H-22727 donor_age="101 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3944 Hotspot_Percentile=37 GSM=GSM530661 dateUnrestricted=2011-01-28
track FH_DNase_62e
bigDataUrl FH_DNase_62.bigWig
shortLabel FH DNase 62 31
longLabel Fetal Heart DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5319 Pcnt=72 DonorID:H-22662)
type bigWig 0 90000
parent containeredacc2DNase
color 0,80,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal heart" tissue_depot=UW collection_method=fetal donor_id=H-22662 donor_age="96 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5319 Hotspot_Percentile=72 GSM=GSM530654 dateUnrestricted=2011-01-28
track FK_DNase_37e
bigDataUrl FK_DNase_37.bigWig
shortLabel FK DNase 37 86
longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.397 Pcnt=40 DonorID:H-22337)
type bigWig 0 90000
parent containeredacc2DNase
color 0,78,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal kidney" tissue_depot=UW collection_method=fetal donor_id=H-22337 donor_age="82 days" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.397 Hotspot_Percentile=40 GSM=GSM493385 dateUnrestricted=2010-12-22
track FK_DNase_76e
bigDataUrl FK_DNase_76.bigWig
shortLabel FK DNase 76 35
longLabel Fetal Kidney DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4301 Pcnt=52 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2DNase
color 0,76,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal kidney" tissue_depot=UW collection_method=fetal donor_id=H-22676 donor_age="122 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4301 Hotspot_Percentile=52 GSM=GSM530655 dateUnrestricted=2011-01-28
track FL_DNase_27e
bigDataUrl FL_DNase_27.bigWig
shortLabel FL DNase 27 17
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6099 Pcnt=90 DonorID:H-22727)
type bigWig 0 90000
parent containeredacc2DNase
color 0,74,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22727 donor_age="101 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6099 Hotspot_Percentile=90 GSM=GSM530662 dateUnrestricted=2011-01-28
track FL_DNase_47e
bigDataUrl FL_DNase_47.bigWig
shortLabel FL DNase 47 66
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.389 Pcnt=30 DonorID:H-23247)
type bigWig 0 90000
parent containeredacc2DNase
color 0,72,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23247 donor_age="day 67" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.389 Hotspot_Percentile=30 GSM=GSM595921 dateUnrestricted=2011-06-21
track FL_DNase_4Be
bigDataUrl FL_DNase_4B.bigWig
shortLabel FL DNase 4B 07
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4924 Pcnt=60 DonorID:H-22934B)
type bigWig 0 90000
parent containeredacc2DNase
color 0,70,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22934B donor_age="day 108" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4924 Hotspot_Percentile=60 GSM=GSM595915 dateUnrestricted=2011-06-21
track FL_DNase_65e
bigDataUrl FL_DNase_65.bigWig
shortLabel FL DNase 65 27
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3588 Pcnt=17 DonorID:H-23365)
type bigWig 0 90000
parent containeredacc2DNase
color 0,68,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23365 donor_age="day 108" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3588 Hotspot_Percentile=17 GSM=GSM595930 dateUnrestricted=2011-06-21
track FL_DNase_66_24e
bigDataUrl FL_DNase_66_24.bigWig
shortLabel FL DNase 66 24
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6395 Pcnt=92 DonorID:H-23266)
type bigWig 0 90000
parent containeredacc2DNase
color 0,66,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6395 Hotspot_Percentile=92 GSM=GSM595924 dateUnrestricted=2011-06-21
track FL_DNase_66_51e
bigDataUrl FL_DNase_66_51.bigWig
shortLabel FL DNase 66 51
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5007 Pcnt=65 DonorID:H-23266)
type bigWig 0 90000
parent containeredacc2DNase
color 0,64,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23266 donor_age="day 85" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5007 Hotspot_Percentile=65 GSM=GSM595925 dateUnrestricted=2011-06-21
track FL_DNase_76e
bigDataUrl FL_DNase_76.bigWig
shortLabel FL DNase 76 46
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4301 Pcnt=52 DonorID:H-22676)
type bigWig 0 90000
parent containeredacc2DNase
color 0,62,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-22676 donor_age="122 days" donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4301 Hotspot_Percentile=52 GSM=GSM530656 dateUnrestricted=2011-01-28
track FL_DNase_84_09e
bigDataUrl FL_DNase_84_09.bigWig
shortLabel FL DNase 84 09
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5432 Pcnt=77 DonorID:H-23284)
type bigWig 0 90000
parent containeredacc2DNase
color 0,60,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5432 Hotspot_Percentile=77 GSM=GSM595927 dateUnrestricted=2011-06-21
track FL_DNase_84_20e
bigDataUrl FL_DNase_84_20.bigWig
shortLabel FL DNase 84 20
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.494 Pcnt=62 DonorID:H-23284)
type bigWig 0 90000
parent containeredacc2DNase
color 0,58,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23284 donor_age="day 96" donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.494 Hotspot_Percentile=62 GSM=GSM595929 dateUnrestricted=2011-06-21
track FL_DNase_90e
bigDataUrl FL_DNase_90.bigWig
shortLabel FL DNase 90 85
longLabel Fetal Lung DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3625 Pcnt=20 DonorID:H-23090)
type bigWig 0 90000
parent containeredacc2DNase
color 0,56,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="University of Washington, Congenital Defects Lab. Ian Glass" biomaterial_type="Primary Tissue" tissue_type="fetal lung" tissue_depot=UW collection_method=fetal donor_id=H-23090 donor_age="day 103" donor_health_status=NA donor_sex=Male donor_ethnicity=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3625 Hotspot_Percentile=20 GSM=GSM595916 dateUnrestricted=2011-06-21
track IMR90_DNase_19e
bigDataUrl IMR90_DNase_19.bigWig
shortLabel IMR90 DNase 19 19
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4554 Pcnt=57 Library:DS13219)
type bigWig 0 90000
parent containeredacc2DNase
color 0,54,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4554 Hotspot_Percentile=57 GSM=GSM530665 dateUnrestricted=2011-01-28
track IMR90_DNase_29e
bigDataUrl IMR90_DNase_29.bigWig
shortLabel IMR90 DNase 29 29
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3425 Pcnt=15 Library:DS13229)
type bigWig 0 90000
parent containeredacc2DNase
color 0,52,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3425 Hotspot_Percentile=15 GSM=GSM530666 dateUnrestricted=2011-01-28
track IMR90_DNase_59e
bigDataUrl IMR90_DNase_59.bigWig
shortLabel IMR90 DNase 59 59
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2914 Pcnt=5 DonorID:NA)
type bigWig 0 90000
parent containeredacc2DNase
color 0,50,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2914 Hotspot_Percentile=5 GSM=GSM468792 dateUnrestricted=2010-10-06
track IMR90_DNase_64e
bigDataUrl IMR90_DNase_64.bigWig
shortLabel IMR90 DNase 64 64
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2892 Pcnt=2 DonorID:NA)
type bigWig 0 90000
parent containeredacc2DNase
color 0,48,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2892 Hotspot_Percentile=2 GSM=GSM468801 dateUnrestricted=2010-10-06
track MCD34_DNase_08e
bigDataUrl MCD34_DNase_08.bigWig
shortLabel MCD34 DNase 08 02
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3758 Pcnt=25 DonorID:RO01508)
type bigWig 0 90000
parent containeredacc2DNase
color 0,46,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01508" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3758 Hotspot_Percentile=25 GSM=GSM493386 dateUnrestricted=2011-06-21
track MCD34_DNase_17e
bigDataUrl MCD34_DNase_17.bigWig
shortLabel MCD34 DNase 17 29
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4378 Pcnt=55 DonorID:RO01517)
type bigWig 0 90000
parent containeredacc2DNase
color 0,44,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01517" donor_age="year 43" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4378 Hotspot_Percentile=55 GSM=GSM595917 dateUnrestricted=2011-06-21
track MCD34_DNase_20e
bigDataUrl MCD34_DNase_20.bigWig
shortLabel MCD34 DNase 20 85
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5165 Pcnt=70 DonorID:RO01520)
type bigWig 0 90000
parent containeredacc2DNase
color 0,42,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01520" donor_age="50 years" donor_health_status=NA donor_sex=Female donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5165 Hotspot_Percentile=70 GSM=GSM530660 dateUnrestricted=2011-01-28
track MCD34_DNase_27e
bigDataUrl MCD34_DNase_27.bigWig
shortLabel MCD34 DNase 27 66
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3399 Pcnt=12 DonorID:RO01527)
type bigWig 0 90000
parent containeredacc2DNase
color 0,40,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01527" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3399 Hotspot_Percentile=12 GSM=GSM493387 dateUnrestricted=2011-06-21
track MCD34_DNase_35_74e
bigDataUrl MCD34_DNase_35_74.bigWig
shortLabel MCD34 DNase 35 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6446 Pcnt=95 DonorID:RO01535)
type bigWig 0 90000
parent containeredacc2DNase
color 0,38,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6446 Hotspot_Percentile=95 GSM=GSM493384 dateUnrestricted=2011-06-21
track MCD34_DNase_35_97e
bigDataUrl MCD34_DNase_35_97.bigWig
shortLabel MCD34 DNase 35 97
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3815 Pcnt=27 DonorID:RO01535)
type bigWig 0 90000
parent containeredacc2DNase
color 0,36,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3815 Hotspot_Percentile=27 GSM=GSM595918 dateUnrestricted=2011-06-21
track MCD34_DNase_36_36e
bigDataUrl MCD34_DNase_36_36.bigWig
shortLabel MCD34 DNase 36 36
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3003 Pcnt=7 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2DNase
color 0,34,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3003 Hotspot_Percentile=7 GSM=GSM595914 dateUnrestricted=2011-06-21
track MCD34_DNase_36_39e
bigDataUrl MCD34_DNase_36_39.bigWig
shortLabel MCD34 DNase 36 39
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3943 Pcnt=35 DonorID:RO01536)
type bigWig 0 90000
parent containeredacc2DNase
color 0,32,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3943 Hotspot_Percentile=35 GSM=GSM530652 dateUnrestricted=2011-01-28
track MCD34_DNase_38e
bigDataUrl MCD34_DNase_38.bigWig
shortLabel MCD34 DNase 38 99
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3195 Pcnt=10 DonorID:RO00738)
type bigWig 0 90000
parent containeredacc2DNase
color 0,30,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 00738" donor_age="49 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3195 Hotspot_Percentile=10 GSM=GSM530664 dateUnrestricted=2011-01-28
track MCD34_DNase_49e
bigDataUrl MCD34_DNase_49.bigWig
shortLabel MCD34 DNase 49 34
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6542 Pcnt=100 DonorID:RO01549)
type bigWig 0 90000
parent containeredacc2DNase
color 0,28,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6542 Hotspot_Percentile=100 GSM=GSM530657 dateUnrestricted=2011-01-28
track MCD34_DNase_62e
bigDataUrl MCD34_DNase_62.bigWig
shortLabel MCD34 DNase 62 96
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3667 Pcnt=22 DonorID:RO01562)
type bigWig 0 90000
parent containeredacc2DNase
color 0,26,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3667 Hotspot_Percentile=22 GSM=GSM530663 dateUnrestricted=2011-01-28
track MCD34_DNase_80e
bigDataUrl MCD34_DNase_80.bigWig
shortLabel MCD34 DNase 80 71
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5473 Pcnt=82 DonorID:RO01480)
type bigWig 0 90000
parent containeredacc2DNase
color 0,24,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01480" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5473 Hotspot_Percentile=82 GSM=GSM530658 dateUnrestricted=2011-01-28
track MCD34_DNase_92_06e
bigDataUrl MCD34_DNase_92_06.bigWig
shortLabel MCD34 DNase 92 06
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4157 Pcnt=47 DonorID:RO01492)
type bigWig 0 90000
parent containeredacc2DNase
color 0,22,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4157 Hotspot_Percentile=47 GSM=GSM595919 dateUnrestricted=2011-06-21
track MCD34_DNase_92_74e
bigDataUrl MCD34_DNase_92_74.bigWig
shortLabel MCD34 DNase 92 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5938 Pcnt=87 DonorID:RO01492)
type bigWig 0 90000
parent containeredacc2DNase
color 0,20,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5938 Hotspot_Percentile=87 GSM=GSM530659 dateUnrestricted=2011-01-28
track Edacc2ContainerbySample
superTrack on
shortLabel Methylation Summary
longLabel Methylation Summary
visibility show
#visibility hide
priority 2
track containerTC007CD4N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC007CD4N Summary
longLabel EDACC Release 2 TC007CD4N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD4N_MeDIP_07m
bigDataUrl CD4N_MeDIP_07.bigWig
shortLabel CD4N MeDIP 07
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4174 Pcnt=83 DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD4N
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4174 Hotspot_Percentile=83 GSM=GSM613913 dateUnrestricted=2011-07-28
track CD4N_MRE_07m
bigDataUrl CD4N_MRE_07.bigWig
shortLabel CD4N MRE 07
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD4N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=38-271bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=92 GSM=GSM613901 dateUnrestricted=2011-07-28
track containerBreSte_RM071
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreSte_RM071 Summary
longLabel EDACC Release 2 BreSte_RM071 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BSC_MeDIP_71m
bigDataUrl BSC_MeDIP_71.bigWig
shortLabel BSC MeDIP 71
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2697 Pcnt=25 DonorID:RM071)
type bigWig 0 90000
parent containerBreSte_RM071
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2697 Hotspot_Percentile=25 GSM=GSM613853 dateUnrestricted=2011-07-28
track BSC_MRE_71m
bigDataUrl BSC_MRE_71.bigWig
shortLabel BSC MRE 71
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containerBreSte_RM071
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.09 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=67 GSM=GSM613829 dateUnrestricted=2011-07-28
track containerBreMyo_RM035
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreMyo_RM035 Summary
longLabel EDACC Release 2 BreMyo_RM035 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BMC_MeDIP_35m
bigDataUrl BMC_MeDIP_35.bigWig
shortLabel BMC MeDIP 35
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4554 Pcnt=91 DonorID:RM035)
type bigWig 0 90000
parent containerBreMyo_RM035
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell" cell_type="Breast Myoepithelial" markers=CD10+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4554 Hotspot_Percentile=91 GSM=GSM543017 dateUnrestricted=2011-02-17
track BMC_MRE_35m
bigDataUrl BMC_MRE_35.bigWig
shortLabel BMC MRE 35
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerBreMyo_RM035
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="myo epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=95.83 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=21 GSM=GSM493624 dateUnrestricted=2010-10-07
track containerBreMyo_RM066
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreMyo_RM066 Summary
longLabel EDACC Release 2 BreMyo_RM066 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BMC_MeDIP_66m
bigDataUrl BMC_MeDIP_66.bigWig
shortLabel BMC MeDIP 66
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1854 Pcnt=8 DonorID:RM066)
type bigWig 0 90000
parent containerBreMyo_RM066
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1854 Hotspot_Percentile=8 GSM=GSM613857 dateUnrestricted=2011-07-28
track BMC_MRE_66m
bigDataUrl BMC_MRE_66.bigWig
shortLabel BMC MRE 66
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containerBreMyo_RM066
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM066 donor_age=36 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.79 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=60 GSM=GSM613834 dateUnrestricted=2011-07-28
track containerBreLum_RM071
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreLum_RM071 Summary
longLabel EDACC Release 2 BreLum_RM071 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_71m
bigDataUrl BLEC_MeDIP_71.bigWig
shortLabel BLEC MeDIP 71
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4128 Pcnt=79)
type bigWig 0 90000
parent containerBreLum_RM071
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4128 Hotspot_Percentile=79 GSM=GSM613852 dateUnrestricted=
track BLEC_MRE_71m
bigDataUrl BLEC_MRE_71.bigWig
shortLabel BLEC MRE 71
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containerBreLum_RM071
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="55-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.88 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=39 GSM=GSM613826 dateUnrestricted=2011-07-28
track containerBreLum_RM066
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreLum_RM066 Summary
longLabel EDACC Release 2 BreLum_RM066 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_66m
bigDataUrl BLEC_MeDIP_66.bigWig
shortLabel BLEC MeDIP 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.291 Pcnt=33 DonorID:RM066)
type bigWig 0 90000
parent containerBreLum_RM066
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=8060 Hotspot_Score=0.291 Hotspot_Percentile=33 GSM=GSM613856 dateUnrestricted=2011-07-28
track BLEC_MRE_66m
bigDataUrl BLEC_MRE_66.bigWig
shortLabel BLEC MRE 66
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containerBreLum_RM066
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a parity=NA karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=78 GSM=GSM613833 dateUnrestricted=2011-07-28
track containerTC009PBMC
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC009PBMC Summary
longLabel EDACC Release 2 TC009PBMC Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track PBM_MRE_09m
bigDataUrl PBM_MRE_09.bigWig
shortLabel PBM MRE 09
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containerTC009PBMC
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Cell" markers=None donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=36-298bp Percent_Reads_Mapping_To_Restriction_Fragments=99.61 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=100 GSM=GSM613919 dateUnrestricted=2011-07-28
track containerTC003PBMC
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC003PBMC Summary
longLabel EDACC Release 2 TC003PBMC Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track PBM_MeDIP_03m
bigDataUrl PBM_MeDIP_03.bigWig
shortLabel PBM MeDIP 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3758 Pcnt=66 DonorID:TC003)
type bigWig 0 90000
parent containerTC003PBMC
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3758 Hotspot_Percentile=66 GSM=GSM543023 dateUnrestricted=2011-02-17
track PBM_MRE_03m
bigDataUrl PBM_MRE_03.bigWig
shortLabel PBM MRE 03
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containerTC003PBMC
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="PBMC blood cells" markers=NA donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=98.99 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=64 GSM=GSM543009 dateUnrestricted=2011-02-17
track containerTC003CD8N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC003CD8N Summary
longLabel EDACC Release 2 TC003CD8N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD8N_MeDIP_03m
bigDataUrl CD8N_MeDIP_03.bigWig
shortLabel CD8N MeDIP 03
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3667 Pcnt=58 DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD8N
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3667 Hotspot_Percentile=58 GSM=GSM543027 dateUnrestricted=2011-02-17
track CD8N_MRE_03m
bigDataUrl CD8N_MRE_03.bigWig
shortLabel CD8N MRE 03
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD8N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive blood cells" markers="CD8+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Percent_Reads_Mapping_To_Restriction_Fragments=99.39 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=85 GSM=GSM543013 dateUnrestricted=2011-02-17
track containerBrevHmec_RM035
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BrevHmec_RM035 Summary
longLabel EDACC Release 2 BrevHmec_RM035 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track Bv_MeDIP_35m
bigDataUrl Bv_MeDIP_35.bigWig
shortLabel Bv MeDIP 35
longLabel Breast vHMEC DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4648 Pcnt=95 DonorID:RM035)
type bigWig 0 90000
parent containerBrevHmec_RM035
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543021 dateUnrestricted=2011-02-17
track Bv_MRE_35m
bigDataUrl Bv_MRE_35.bigWig
shortLabel Bv MRE 35
longLabel Breast vHMEC DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM035)
type bigWig 0 90000
parent containerBrevHmec_RM035
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Tlsty Lab, University of California, San Francisco" biomaterial_type="Primary Cell Culture" cell_type="Variant Human Mammary Epithelial Cells" markers=NA culture_conditions="spilt 1:5 in MEGM medium (Lonza Inc.)" donor_id=RM035 donor_age=18 donor_health_status=Disease-free donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=8 karyotype=46,XX,1dmin experiment_type="DNA Methylation" mre_protocol="Costello Lab Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=100-300bp Hotspot_Score=0.4648 Hotspot_Percentile=95 GSM=GSM543007 dateUnrestricted=2011-02-17
track containerTC003CD4M
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC003CD4M Summary
longLabel EDACC Release 2 TC003CD4M Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD4M_MeDIP_03m
bigDataUrl CD4M_MeDIP_03.bigWig
shortLabel CD4M MeDIP 03
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.201 Pcnt=12 DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD4M
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.201 Hotspot_Percentile=12 GSM=GSM613862 dateUnrestricted=2011-07-28
track CD4M_MRE_03m
bigDataUrl CD4M_MRE_03.bigWig
shortLabel CD4M MRE 03
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD4M
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers=CD4+,CD45RO+ donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="1.5 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="50-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=95.8 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=17 GSM=GSM613842 dateUnrestricted=2011-07-28
track containerBreMyo_RM071
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreMyo_RM071 Summary
longLabel EDACC Release 2 BreMyo_RM071 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BMC_MeDIP_71m
bigDataUrl BMC_MeDIP_71.bigWig
shortLabel BMC MeDIP 71
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3537 Pcnt=54)
type bigWig 0 90000
parent containerBreMyo_RM071
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3537 Hotspot_Percentile=54 GSM=GSM613850 dateUnrestricted=
track BMC_MRE_71m
bigDataUrl BMC_MRE_71.bigWig
shortLabel BMC MRE 71
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM071)
type bigWig 0 90000
parent containerBreMyo_RM071
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM071 donor_age="37 yrs" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=n/a karyotype="46, XX" parity=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=53-282bp Percent_Reads_Mapping_To_Restriction_Fragments=98.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=50 GSM=GSM613908 dateUnrestricted=2011-07-28
track containerBreLum_RM070
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreLum_RM070 Summary
longLabel EDACC Release 2 BreLum_RM070 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_70m
bigDataUrl BLEC_MeDIP_70.bigWig
shortLabel BLEC MeDIP 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2634 Pcnt=20 DonorID:RM070)
type bigWig 0 90000
parent containerBreLum_RM070
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2634 Hotspot_Percentile=20 GSM=GSM613843 dateUnrestricted=2011-07-28
track BLEC_MRE_70m
bigDataUrl BLEC_MRE_70.bigWig
shortLabel BLEC MRE 70
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containerBreLum_RM070
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=2 karyotype="46, XX" experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-336 bp" Percent_Reads_Mapping_To_Restriction_Fragments=96.3 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=25 GSM=GSM613818 dateUnrestricted=2011-07-28
track containerBreMyo_RM070
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreMyo_RM070 Summary
longLabel EDACC Release 2 BreMyo_RM070 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BMC_MeDIP_70m
bigDataUrl BMC_MeDIP_70.bigWig
shortLabel BMC MeDIP 70
longLabel Breast Myoepithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3369 Pcnt=45 DonorID:RM070)
type bigWig 0 90000
parent containerBreMyo_RM070
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3369 Hotspot_Percentile=45 GSM=GSM613846 dateUnrestricted=2011-07-28
track BMC_MRE_70m
bigDataUrl BMC_MRE_70.bigWig
shortLabel BMC MRE 70
longLabel Breast Myoepithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containerBreMyo_RM070
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="myo epithelial cell" markers=CD10+ donor_id=RM070 donor_age="26 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="40-296 bp" Percent_Reads_Mapping_To_Restriction_Fragments=97.93 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=42 GSM=GSM613821 dateUnrestricted=2011-07-28
track containerBreSte_RM066
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreSte_RM066 Summary
longLabel EDACC Release 2 BreSte_RM066 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BSC_MeDIP_66m
bigDataUrl BSC_MeDIP_66.bigWig
shortLabel BSC MeDIP 66
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.1738 Pcnt=4 DonorID:RM066)
type bigWig 0 90000
parent containerBreSte_RM066
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.1738 Hotspot_Percentile=4 GSM=GSM613859 dateUnrestricted=2011-07-28
track BSC_MRE_66m
bigDataUrl BSC_MRE_66.bigWig
shortLabel BSC MRE 66
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM066)
type bigWig 0 90000
parent containerBreSte_RM066
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM066 donor_age="36 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=N/A experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction="30-280 bp" Percent_Reads_Mapping_To_Restriction_Fragments=98.12 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=46 GSM=GSM613837 dateUnrestricted=2011-07-28
track containerTC009CD8N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC009CD8N Summary
longLabel EDACC Release 2 TC009CD8N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD8N_MRE_09m
bigDataUrl CD8N_MRE_09.bigWig
shortLabel CD8N MRE 09
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containerTC009CD8N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=30-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.51 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=89 GSM=GSM613923 dateUnrestricted=2011-07-28
track containerH1_Cell_Line
container multiWig
superTrack Edacc2ContainerbySample
shortLabel H1_Cell_Line Summary
longLabel EDACC Release 2 H1_Cell_Line Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_MeDIP_03m
bigDataUrl H1_MeDIP_03.bigWig
shortLabel H1 MeDIP 03
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3021 Pcnt=37 DonorID:NA)
type bigWig 0 90000
parent containerH1_Cell_Line
color 100,0,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3021 Hotspot_Percentile=37 GSM=GSM456941 dateUnrestricted=2010-12-22
track H1_MeDIP_76m
bigDataUrl H1_MeDIP_76.bigWig
shortLabel H1 MeDIP 76
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3687 Pcnt=62 Library:HS1376)
type bigWig 0 90000
parent containerH1_Cell_Line
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=pluripotent differentiation_stage=undifferentiated differentiation_method=NA passage=30 medium="CDI protocol" Sex=Male batch=#1 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=5ug medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3687 Hotspot_Percentile=62 GSM=GSM543016 dateUnrestricted=2011-07-28
track H1_MRE_52m
bigDataUrl H1_MRE_52.bigWig
shortLabel H1 MRE 52
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerH1_Cell_Line
color 0,100,0
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a Sex=Male experiment_type="DNA Methylation" mre_protocol="costello lab protocol" mre_protocol_chromatin_amount=44ug mre_protocol_restriction_enzyme=HpaII,Hin6I,AciI mre_protocol_size_fraction=100-300bp Percent_Reads_Mapping_To_Restriction_Fragments=82.85 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=3 GSM=GSM428286 dateUnrestricted=2010-10-07
track H1_MRE_53m
bigDataUrl H1_MRE_53.bigWig
shortLabel H1 MRE 53
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerH1_Cell_Line
color 0,100,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=89.07 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=7 GSM=GSM450236 dateUnrestricted=2010-10-07
track H1_MRE_73m
bigDataUrl H1_MRE_73.bigWig
shortLabel H1 MRE 73
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (Library:HS1473)
type bigWig 0 90000
parent containerH1_Cell_Line
color 0,100,0
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage="pluripotent" differentiation_stage=undifferentiated differentiation_method=NA passage="32" medium="CDI Protocol" Sex=Male experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="1ug" mre_protocol_restriction_enzyme="MspI" mre_protocol_size_fraction="100-300bp" Percent_Reads_Mapping_To_Restriction_Fragments=90.19 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=10 GSM=GSM543005 dateUnrestricted=2011-07-21
track containerTC007PBMC
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC007PBMC Summary
longLabel EDACC Release 2 TC007PBMC Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track PBM_MeDIP_07m
bigDataUrl PBM_MeDIP_07.bigWig
shortLabel PBM MeDIP 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.0094 Pcnt=30 DonorID:TC007)
type bigWig 0 90000
parent containerTC007PBMC
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.0094 Hotspot_Percentile=30 GSM=GSM613911 dateUnrestricted=2011-07-28
track PBM_MRE_07m
bigDataUrl PBM_MRE_07.bigWig
shortLabel PBM MRE 07
longLabel Peripheral Blood Mononuclear Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containerTC007PBMC
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="Peripheral Blood Mononuclear Primary Cell" markers=None donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=48-265bp Percent_Reads_Mapping_To_Restriction_Fragments=99.15 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=71 GSM=GSM613898 dateUnrestricted=2011-07-28
track containerBreSte_RM070
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreSte_RM070 Summary
longLabel EDACC Release 2 BreSte_RM070 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BSC_MeDIP_70m
bigDataUrl BSC_MeDIP_70.bigWig
shortLabel BSC MeDIP 70
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3101 Pcnt=41 DonorID:RM070)
type bigWig 0 90000
parent containerBreSte_RM070
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3101 Hotspot_Percentile=41 GSM=GSM613847 dateUnrestricted=2011-07-28
track BSC_MRE_70m
bigDataUrl BSC_MRE_70.bigWig
shortLabel BSC MRE 70
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:RM070)
type bigWig 0 90000
parent containerBreSte_RM070
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="stem cell" markers=CD73+ donor_id=RM070 donor_age="26 years" donor_health_status=NA donor_sex=Female donor_ethnicity="African American" passage_if_expanded=n/a karyotype="46, XX" parity=2 experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=1.5ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=33-265bp Percent_Reads_Mapping_To_Restriction_Fragments=97.68 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=35 GSM=GSM613907 dateUnrestricted=2011-07-28
track containerTC009CD4N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC009CD4N Summary
longLabel EDACC Release 2 TC009CD4N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD4N_MRE_09m
bigDataUrl CD4N_MRE_09.bigWig
shortLabel CD4N MRE 09
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC009)
type bigWig 0 90000
parent containerTC009CD4N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive" markers="CD4+, CD45RA+" donor_id=TC009 donor_age="30 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=O+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=34-284bp Percent_Reads_Mapping_To_Restriction_Fragments=99.59 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=96 GSM=GSM613920 dateUnrestricted=2011-07-28
track containerBreSte_RM035
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreSte_RM035 Summary
longLabel EDACC Release 2 BreSte_RM035 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BSC_MeDIP_35m
bigDataUrl BSC_MeDIP_35.bigWig
shortLabel BSC MeDIP 35
longLabel Breast Stem Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4841 Pcnt=100 DonorID:RM035)
type bigWig 0 90000
parent containerBreSte_RM035
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Breast stem cell" markers=CD73+ donor_id=RM035 donor_age=18 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4841 Hotspot_Percentile=100 GSM=GSM543019 dateUnrestricted=2011-02-17
track BSC_MRE_35m
bigDataUrl BSC_MRE_35.bigWig
shortLabel BSC MRE 35
longLabel Breast Stem Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerBreSte_RM035
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="stem cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=96.86 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=28 GSM=GSM493626 dateUnrestricted=2010-10-07
track containerTC007CD8N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC007CD8N Summary
longLabel EDACC Release 2 TC007CD8N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD8N_MeDIP_07m
bigDataUrl CD8N_MeDIP_07.bigWig
shortLabel CD8N MeDIP 07
longLabel CD8 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4017 Pcnt=75 DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD8N
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4017 Hotspot_Percentile=75 GSM=GSM613917 dateUnrestricted=2011-07-28
track CD8N_MRE_07m
bigDataUrl CD8N_MRE_07.bigWig
shortLabel CD8N MRE 07
longLabel CD8 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD8N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD8 Naive" markers="CD8+, CD45RA+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=42-274bp Percent_Reads_Mapping_To_Restriction_Fragments=99.36 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=82 GSM=GSM613905 dateUnrestricted=2011-07-28
track containerBreLum_RM035
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreLum_RM035 Summary
longLabel EDACC Release 2 BreLum_RM035 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_35m
bigDataUrl BLEC_MeDIP_35.bigWig
shortLabel BLEC MeDIP 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.4531 Pcnt=87 DonorID:NA)
type bigWig 0 90000
parent containerBreLum_RM035
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Hlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.4531 Hotspot_Percentile=87 GSM=GSM493615 dateUnrestricted=2010-12-22
track BLEC_MRE_35m
bigDataUrl BLEC_MRE_35.bigWig
shortLabel BLEC MRE 35
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerBreLum_RM035
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=97.14 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=32 GSM=GSM493620 dateUnrestricted=2010-10-07
track containerTC003CD4N
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC003CD4N Summary
longLabel EDACC Release 2 TC003CD4N Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD4N_MeDIP_03m
bigDataUrl CD4N_MeDIP_03.bigWig
shortLabel CD4N MeDIP 03
longLabel CD4 Naive Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2893 Pcnt=29 DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD4N
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount="2 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2893 Hotspot_Percentile=29 GSM=GSM543025 dateUnrestricted=2011-02-17
track CD4N_MRE_03m
bigDataUrl CD4N_MRE_03.bigWig
shortLabel CD4N MRE 03
longLabel CD4 Naive Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC003)
type bigWig 0 90000
parent containerTC003CD4N
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Naive blood cells" markers="CD4+, CD45RA+" donor_id=TC003 donor_age=21 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="3 ug" mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=50-300bp Hotspot_Score=0.2771 Hotspot_Percentile=60 GSM=GSM543011 dateUnrestricted=2011-02-17
track containerBreLum_RM037
container multiWig
superTrack Edacc2ContainerbySample
shortLabel BreLum_RM037 Summary
longLabel EDACC Release 2 BreLum_RM037 Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track BLEC_MeDIP_37m
bigDataUrl BLEC_MeDIP_37.bigWig
shortLabel BLEC MeDIP 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.2494 Pcnt=16 DonorID:RM037)
type bigWig 0 90000
parent containerBreLum_RM037
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty Lab UCSF" biomaterial_type="Primary Cell" cell_type="Luminal epithelial cell" markers=CD227+ donor_id=RM037 donor_age="39 years" donor_health_status="Disease Free" donor_sex=Female donor_ethnicity="African American" passage_if_expanded=NA parity=NA karyotype="46, XX" experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount="1.5 ug" medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount="1 ug" medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.2494 Hotspot_Percentile=16 GSM=GSM613864 dateUnrestricted=2011-07-28
track BLEC_MRE_37m
bigDataUrl BLEC_MRE_37.bigWig
shortLabel BLEC MRE 37
longLabel Breast Luminal Epithelial Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containerBreLum_RM037
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thea Tlsty" biomaterial_type="Primary Tissue" tissue_type="Luminal epithelial cell" tissue_depot=NA collection_method=NA donor_id=NA donor_age=NA donor_health_status=NA donor_sex=Female donor_ethnicity=NA experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA GSM=GSM493617 dateUnrestricted=2010-10-07
track containerTC007CD4M
container multiWig
superTrack Edacc2ContainerbySample
shortLabel TC007CD4M Summary
longLabel EDACC Release 2 TC007CD4M Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD4M_MeDIP_07m
bigDataUrl CD4M_MeDIP_07.bigWig
shortLabel CD4M MeDIP 07
longLabel CD4 Memory Primary Cells DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3391 Pcnt=50 DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD4M
color 100,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP Protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles=25min medip_protocol="Costello Lab MeDIP Protocol" medip_protocol_dna_amount=2ug medip_protocol_bead_type="Protein A/G" medip_protocol_bead_amount=100ul medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3391 Hotspot_Percentile=50 GSM=GSM613914 dateUnrestricted=2011-07-28
track CD4M_MRE_07m
bigDataUrl CD4M_MRE_07.bigWig
shortLabel CD4M MRE 07
longLabel CD4 Memory Primary Cells DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:TC007)
type bigWig 0 90000
parent containerTC007CD4M
color 0,100,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Weiss Lab UCSF" biomaterial_type="Primary Cell" cell_type="CD4 Memory" markers="CD4, CD45RO+" donor_id=TC007 donor_age=34 donor_health_status="Disease Free" donor_sex=Female donor_ethnicity=Asian passage_if_expanded=NA karyotype="46, XX" parity=NA blood_type=A+ experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE Protocol" mre_protocol_chromatin_amount=3ug mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=44-299bp Percent_Reads_Mapping_To_Restriction_Fragments=99.16 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=75 GSM=GSM613903 dateUnrestricted=2011-07-28
track edaccContainerTracksbySample
superTrack on hide
shortLabel Cell Type Summary
longLabel Cell Type Summary
priority 3
track containersampleH1
container multiWig
superTrack edaccContainerTracksbySample full
shortLabel H1 Summary
longLabel EDACC Release2 H1 Cell Line Data Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track H1_MeDIP_03s
bigDataUrl H1_MeDIP_03.bigWig
shortLabel H1 MeDIP 03
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3021 Pcnt=37 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 255,62,150
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" extraction_protocol=NA extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol=NA medip_protocol_dna_amount=NA medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=NA medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3021 Hotspot_Percentile=37 GSM=GSM456941 dateUnrestricted=2010-12-22
track H1_MeDIP_76s
bigDataUrl H1_MeDIP_76.bigWig
shortLabel H1 MeDIP 76
longLabel H1 Cell Line DNA Methylation by MeDIP-seq Signal from REMC/UCSF-UBC (Hotspot_Score=0.3687 Pcnt=62 Library:HS1376)
type bigWig 0 90000
parent containersampleH1
color 255,62,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=pluripotent differentiation_stage=undifferentiated differentiation_method=NA passage=30 medium="CDI protocol" Sex=Male batch=#1 experiment_type="DNA Methylation" extraction_protocol="Costello Lab MeDIP protocol" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="25 min" medip_protocol="Costello Lab MeDIP protocol" medip_protocol_dna_amount=5ug medip_protocol_bead_type="Protein A/G Beads" medip_protocol_bead_amount="100 ul" medip_protocol_antibody_amount=1ug medip_antibody=Methylcytidine medip_antibody_provider=Eurogentec medip_antibody_catalog=BI-MECY-0100 medip_antibody_lot=80604 Hotspot_Score=0.3687 Hotspot_Percentile=62 GSM=GSM543016 dateUnrestricted=2011-07-28
track H1_MRE_52s
bigDataUrl H1_MRE_52.bigWig
shortLabel H1 MRE 52
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 152,251,152
metadata molecule="genomic DNA" disease=Normal biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=n/a differentiation_stage=undifferentiated differentiation_method=n/a passage=n/a medium=n/a Sex=Male experiment_type="DNA Methylation" mre_protocol="costello lab protocol" mre_protocol_chromatin_amount=44ug mre_protocol_restriction_enzyme=HpaII,Hin6I,AciI mre_protocol_size_fraction=100-300bp Percent_Reads_Mapping_To_Restriction_Fragments=82.85 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=3 GSM=GSM428286 dateUnrestricted=2010-10-07
track H1_MRE_53s
bigDataUrl H1_MRE_53.bigWig
shortLabel H1 MRE 53
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 152,251,152
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage=NA differentiation_stage=undifferentiated differentiation_method=NA passage=NA medium=NA Sex=Male experiment_type="DNA Methylation" mre_protocol=NA mre_protocol_chromatin_amount=NA mre_protocol_restriction_enzyme="HpaII, Hin6I, AciI" mre_protocol_size_fraction=NA Percent_Reads_Mapping_To_Restriction_Fragments=89.07 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=7 GSM=GSM450236 dateUnrestricted=2010-10-07
track H1_MRE_73s
bigDataUrl H1_MRE_73.bigWig
shortLabel H1 MRE 73
longLabel H1 Cell Line DNA Methylation by MRE-seq Signal from REMC/UCSF-UBC (Library:HS1473)
type bigWig 0 90000
parent containersampleH1
color 152,251,152
metadata batch=#2 molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line="H1 (WA01)" lineage="pluripotent" differentiation_stage=undifferentiated differentiation_method=NA passage="32" medium="CDI Protocol" Sex=Male experiment_type="DNA Methylation" mre_protocol="Costello Lab MRE protocol" mre_protocol_chromatin_amount="1ug" mre_protocol_restriction_enzyme="MspI" mre_protocol_size_fraction="100-300bp" Percent_Reads_Mapping_To_Restriction_Fragments=90.19 Percent_Reads_Mapping_To_Restriction_Fragments_Percentile=10 GSM=GSM543005 dateUnrestricted=2011-07-21
track H1_Input_0531s
bigDataUrl H1_Input_0531.bigWig
shortLabel H1 Input 31
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0894 Pcnt=73 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39805 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0894 Hotspot_Percentile=73 GSM=GSM433179 dateUnrestricted=2010-05-05
track H1_Input_2532s
bigDataUrl H1_Input_2532.bigWig
shortLabel H1 Input 32
longLabel H1 Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0809 Pcnt=61 Library:Solexa-12532)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0809 Hotspot_Percentile=61 GSM=GSM537682 dateUnrestricted=2011-01-28
track H1_H3K27me3_2523s
bigDataUrl H1_H3K27me3_2523.bigWig
shortLabel H1 H3K27me3 23
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3386 Pcnt=87 Library:Solexa-12523)
type bigWig 0 90000
parent containersampleH1
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3386 Hotspot_Percentile=87 GSM=GSM537683 dateUnrestricted=2011-01-28
track H1_H3K27me3_8039s
bigDataUrl H1_H3K27me3_8039.bigWig
shortLabel H1 H3K27me3 39
longLabel H1 H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2783 Pcnt=71 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1387952 Hotspot_Score=0.2783 Hotspot_Percentile=71 GSM=GSM433167 dateUnrestricted=2010-05-05
track H1_H3K36me3_2524s
bigDataUrl H1_H3K36me3_2524.bigWig
shortLabel H1 H3K36me3 24
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1645 Pcnt=19 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.1645 Hotspot_Percentile=19 GSM=GSM433176 dateUnrestricted=2010-05-05
track H1_H3K36me3_4961s
bigDataUrl H1_H3K36me3_4961.bigWig
shortLabel H1 H3K36me3 61
longLabel H1 H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0 Pcnt=NA Library:Solexa-14961)
type bigWig 0 90000
parent containersampleH1
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=499302 Hotspot_Score=0.0 Hotspot_Percentile=NA GSM=GSM537684 dateUnrestricted=2011-01-28
track H1_H3K4me1_0529s
bigDataUrl H1_H3K4me1_0529.bigWig
shortLabel H1 H3K4me1 29
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2785 Pcnt=21 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2785 Hotspot_Percentile=21 GSM=GSM433177 dateUnrestricted=2010-05-05
track H1_H3K4me1_3061s
bigDataUrl H1_H3K4me1_3061.bigWig
shortLabel H1 H3K4me1 61
longLabel H1 H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2723 Pcnt=19 Library:Solexa-13061)
type bigWig 0 90000
parent containersampleH1
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=383111 Hotspot_Score=0.2723 Hotspot_Percentile=19 GSM=GSM537679 dateUnrestricted=2011-01-28
track H1_H3K4me3_0398s
bigDataUrl H1_H3K4me3_0398.bigWig
shortLabel H1 H3K4me3 98
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3314 Pcnt=36 Library:Solexa-10398)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=12/23/08 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1541166 Hotspot_Score=0.3314 Hotspot_Percentile=36 GSM=GSM537680 dateUnrestricted=2011-01-28
track H1_H3K4me3_2522s
bigDataUrl H1_H3K4me3_2522.bigWig
shortLabel H1 H3K4me3 22
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2734 Pcnt=23 Library:Solexa-12522)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=32.0 medium=TESR sex=Male batch=0/0/00 experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2734 Hotspot_Percentile=23 GSM=GSM537681 dateUnrestricted=2011-01-28
track H1_H3K4me3_8038s
bigDataUrl H1_H3K4me3_8038.bigWig
shortLabel H1 H3K4me3 38
longLabel H1 H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4388 Pcnt=61 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=331024 Hotspot_Score=0.4388 Hotspot_Percentile=61 GSM=GSM433170 dateUnrestricted=2010-05-05
track H1_H3K9ac_2526s
bigDataUrl H1_H3K9ac_2526.bigWig
shortLabel H1 H3K9ac 26
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2242 Pcnt=40 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 0,168,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.2242 Hotspot_Percentile=40 GSM=GSM433171 dateUnrestricted=2010-05-05
track H1_H3K9ac_4962s
bigDataUrl H1_H3K9ac_4962.bigWig
shortLabel H1 H3K9ac 62
longLabel H1 H3K9ac Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1796 Pcnt=34 Library:Solexa-14962)
type bigWig 0 90000
parent containersampleH1
color 0,168,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Male batch=9/1/08 experiment_type="Histone H3K9ac" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4441 chip_antibody_lot=455103 Hotspot_Score=0.1796 Hotspot_Percentile=34 GSM=GSM537685 dateUnrestricted=2011-01-28
track H1_H3K9me3_2525s
bigDataUrl H1_H3K9me3_2525.bigWig
shortLabel H1 H3K9me3 25
longLabel H1 H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1525 Pcnt=46 DonorID:NA)
type bigWig 0 90000
parent containersampleH1
color 255,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider="Cellular Dynamics" biomaterial_type="Cell Line" line=H1 lineage=undifferentiated differentiation_stage=stage_zero differentiation_method=none passage=42 medium=TESR sex=Unknown batch=39877 experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=standard chip_protocol_chromatin_amount=standard chip_protocol_bead_type=standard chip_protocol_bead_amount=standard chip_protocol_antibody_amount=standard chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.1525 Hotspot_Percentile=46 GSM=GSM433174 dateUnrestricted=2010-05-05
track H1_BisulfiteSeq_eds
bigDataUrl H1_BisulfiteSeq_ed.bigWig
shortLabel H1 BS 2a
longLabel H1 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_h1_r2a)
type bigWig 0 90000
parent containersampleH1
color 0,0,133
metadata molecule="genomic DNA" disease=None biomaterial_provider="Thomson Laboratory" biomaterial_type="Cell Line" line=H1 lineage=NA batch=#1 differentiation_stage="embryonic stem cell" differentiation_method=NA passage=30 medium=TeSR sex=Male experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=97.24 GSM=GSM429321 dateUnrestricted=2010-07-13
track H1_H2BK20ac_05s
bigDataUrl H1_H2BK20ac_05.bigWig
shortLabel H1 H2BK20ac 05
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=50 Library:SAK205)
type bigWig 0 90000
parent containersampleH1
color 0,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.1512 Hotspot_Percentile=50 GSM=GSM605301 dateUnrestricted=2011-07-07
track H1_H2BK20ac_07s
bigDataUrl H1_H2BK20ac_07.bigWig
shortLabel H1 H2BK20ac 07
longLabel H1 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.121 Pcnt=25 Library:YL207)
type bigWig 0 90000
parent containersampleH1
color 0,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog="upstate 07-347" chip_antibody_lot=22355 Hotspot_Score=0.121 Hotspot_Percentile=25 GSM=GSM605300 dateUnrestricted=2011-07-07
track H1_H3K27me3_41s
bigDataUrl H1_H3K27me3_41.bigWig
shortLabel H1 H3K27me3 41
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3607 Pcnt=88 Library:LL241)
type bigWig 0 90000
parent containersampleH1
color 255,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3607 Hotspot_Percentile=88 GSM=GSM434776 dateUnrestricted=2010-05-03
track H1_H3K27me3_14s
bigDataUrl H1_H3K27me3_14.bigWig
shortLabel H1 H3K27me3 14
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.497 Pcnt=100 Library:LL314)
type bigWig 0 90000
parent containersampleH1
color 255,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.497 Hotspot_Percentile=100 GSM=GSM466734 dateUnrestricted=2010-10-07
track H1_H3K27me3_95s
bigDataUrl H1_H3K27me3_95.bigWig
shortLabel H1 H3K27me3 95
longLabel H1 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=85 Library:YL95)
type bigWig 0 90000
parent containersampleH1
color 255,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3196 Hotspot_Percentile=85 GSM=GSM605308 dateUnrestricted=2011-07-07
track H1_H3K4me3_27s
bigDataUrl H1_H3K4me3_27.bigWig
shortLabel H1 H3K4me3 27
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6545 Pcnt=87 Library:LL227)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog=04-745 chip_antibody_lot=DAM1494280 Hotspot_Score=0.6545 Hotspot_Percentile=87 GSM=GSM409308 dateUnrestricted=2010-05-03
track H1_H3K4me3_12s
bigDataUrl H1_H3K4me3_12.bigWig
shortLabel H1 H3K4me3 12
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6914 Pcnt=92 Library:LL312)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.6914 Hotspot_Percentile=92 GSM=GSM469971 dateUnrestricted=2010-10-07
track H1_H3K4me3_67s
bigDataUrl H1_H3K4me3_67.bigWig
shortLabel H1 H3K4me3 67
longLabel H1 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6969 Pcnt=93 Library:SAK67)
type bigWig 0 90000
parent containersampleH1
color 0,250,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Millipore chip_antibody_catalog="Millipore 04-745" chip_antibody_lot="DAM 1554357" Hotspot_Score=0.6969 Hotspot_Percentile=93 GSM=GSM605315 dateUnrestricted=2011-07-07
track H1_H3K9me3_18s
bigDataUrl H1_H3K9me3_18.bigWig
shortLabel H1 H3K9me3 18
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4557 Pcnt=NA Library:LL218)
type bigWig 0 90000
parent containersampleH1
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.4557 Hotspot_Percentile=NA GSM=GSM605325 dateUnrestricted=2011-07-07
track H1_H3K9me3_75s
bigDataUrl H1_H3K9me3_75.bigWig
shortLabel H1 H3K9me3 75
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1788 Pcnt=56 Library:YL75)
type bigWig 0 90000
parent containersampleH1
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.1788 Hotspot_Percentile=56 GSM=GSM605327 dateUnrestricted=2011-07-07
track H1_H3K9me3_77s
bigDataUrl H1_H3K9me3_77.bigWig
shortLabel H1 H3K9me3 77
longLabel H1 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2029 Pcnt=68 Library:YL77)
type bigWig 0 90000
parent containersampleH1
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2029 Hotspot_Percentile=68 GSM=GSM605328 dateUnrestricted=2011-07-07
track H1_H2AK5ac_01s
bigDataUrl H1_H2AK5ac_01.bigWig
shortLabel H1 H2AK5ac 01
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1178 Pcnt=17 Library:SAK201)
type bigWig 0 90000
parent containersampleH1
color 194,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=727067 Hotspot_Score=0.1178 Hotspot_Percentile=17 GSM=GSM602258 dateUnrestricted=2011-07-07
track H1_H2AK5ac_97s
bigDataUrl H1_H2AK5ac_97.bigWig
shortLabel H1 H2AK5ac 97
longLabel H1 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2032 Pcnt=33 Library:YL97)
type bigWig 0 90000
parent containersampleH1
color 194,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.2032 Hotspot_Percentile=33 GSM=GSM602257 dateUnrestricted=2011-07-07
track H1_H2BK5ac_02s
bigDataUrl H1_H2BK5ac_02.bigWig
shortLabel H1 H2BK5ac 02
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1906 Pcnt=50 Library:SAK202)
type bigWig 0 90000
parent containersampleH1
color 0,120,110
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39123 chip_antibody_lot=229 Hotspot_Score=0.1906 Hotspot_Percentile=50 GSM=GSM605303 dateUnrestricted=2011-07-07
track H1_H2BK5ac_98s
bigDataUrl H1_H2BK5ac_98.bigWig
shortLabel H1 H2BK5ac 98
longLabel H1 Cell Line H2BK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2022 Pcnt=100 Library:YL98)
type bigWig 0 90000
parent containersampleH1
color 0,120,110
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40886 chip_antibody_lot=529107 Hotspot_Score=0.2022 Hotspot_Percentile=100 GSM=GSM605302 dateUnrestricted=2011-07-07
track H1_H3K36me3_60s
bigDataUrl H1_H3K36me3_60.bigWig
shortLabel H1 H3K36me3 60
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4284 Pcnt=91 Library:LL160)
type bigWig 0 90000
parent containersampleH1
color 0,194,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4284 Hotspot_Percentile=91 GSM=GSM466737 dateUnrestricted=2010-10-07
track H1_H3K36me3_20s
bigDataUrl H1_H3K36me3_20.bigWig
shortLabel H1 H3K36me3 20
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3294 Pcnt=75 Library:LL220)
type bigWig 0 90000
parent containersampleH1
color 0,194,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.3294 Hotspot_Percentile=75 GSM=GSM409312 dateUnrestricted=2010-05-03
track H1_H3K36me3_70s
bigDataUrl H1_H3K36me3_70.bigWig
shortLabel H1 H3K36me3 70
longLabel H1 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2825 Pcnt=58 Library:SAK70)
type bigWig 0 90000
parent containersampleH1
color 0,194,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707948 Hotspot_Score=0.2825 Hotspot_Percentile=58 GSM=GSM605309 dateUnrestricted=2011-07-07
track H1_H3K56ac_11s
bigDataUrl H1_H3K56ac_11.bigWig
shortLabel H1 H3K56ac 11
longLabel H1 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.231 Pcnt=33 Library:SAK211)
type bigWig 0 90000
parent containersampleH1
color 0,255,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-677" chip_antibody_lot=DAM1462569 Hotspot_Score=0.231 Hotspot_Percentile=33 GSM=GSM605317 dateUnrestricted=2011-07-07
track H1_H4K20me1_53s
bigDataUrl H1_H4K20me1_53.bigWig
shortLabel H1 H4K20me1 53
longLabel H1 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1863 Pcnt=33 Library:YL253)
type bigWig 0 90000
parent containersampleH1
color 0,200,200
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.1863 Hotspot_Percentile=33 GSM=GSM605329 dateUnrestricted=2011-07-07
track H1_H2BK120ac_06s
bigDataUrl H1_H2BK120ac_06.bigWig
shortLabel H1 H2BK120ac 06
longLabel H1 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.148 Pcnt=33 Library:SAK206)
type bigWig 0 90000
parent containersampleH1
color 0,168,84
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39119 chip_antibody_lot=255 Hotspot_Score=0.148 Hotspot_Percentile=33 GSM=GSM605295 dateUnrestricted=2011-07-07
track H1_H3K18ac_21s
bigDataUrl H1_H3K18ac_21.bigWig
shortLabel H1 H3K18ac 21
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3196 Pcnt=50 Library:LL321)
type bigWig 0 90000
parent containersampleH1
color 198,226,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=122116 Hotspot_Score=0.3196 Hotspot_Percentile=50 GSM=GSM605304 dateUnrestricted=2011-07-07
track H1_H3K18ac_08s
bigDataUrl H1_H3K18ac_08.bigWig
shortLabel H1 H3K18ac 08
longLabel H1 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1969 Pcnt=25 Library:SAK208)
type bigWig 0 90000
parent containersampleH1
color 198,226,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=ab1191 chip_antibody_lot=527530 Hotspot_Score=0.1969 Hotspot_Percentile=25 GSM=GSM602259 dateUnrestricted=2011-07-07
track H1_H3K4ac_07s
bigDataUrl H1_H3K4ac_07.bigWig
shortLabel H1 H3K4ac 07
longLabel H1 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1755 Pcnt=33 Library:SAK207)
type bigWig 0 90000
parent containersampleH1
color 255,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog="Upstate 07-539" chip_antibody_lot=26747 Hotspot_Score=0.1755 Hotspot_Percentile=33 GSM=GSM605311 dateUnrestricted=2011-07-07
track H1_H3K79me1_73s
bigDataUrl H1_H3K79me1_73.bigWig
shortLabel H1 H3K79me1 73
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1751 Pcnt=29 Library:SAK73)
type bigWig 0 90000
parent containersampleH1
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1751 Hotspot_Percentile=29 GSM=GSM605319 dateUnrestricted=2011-07-07
track H1_H3K79me1_92s
bigDataUrl H1_H3K79me1_92.bigWig
shortLabel H1 H3K79me1 92
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.123 Pcnt=14 Library:YL192)
type bigWig 0 90000
parent containersampleH1
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.123 Hotspot_Percentile=14 GSM=GSM605320 dateUnrestricted=2011-07-07
track H1_H3K79me1_82s
bigDataUrl H1_H3K79me1_82.bigWig
shortLabel H1 H3K79me1 82
longLabel H1 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1822 Pcnt=43 Library:YL82)
type bigWig 0 90000
parent containersampleH1
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1E experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=502497 Hotspot_Score=0.1822 Hotspot_Percentile=43 GSM=GSM605318 dateUnrestricted=2011-07-07
track H1_H4K5ac_23s
bigDataUrl H1_H4K5ac_23.bigWig
shortLabel H1 H4K5ac 23
longLabel H1 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3499 Pcnt=NA Library:LL323)
type bigWig 0 90000
parent containersampleH1
color 200,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.3499 Hotspot_Percentile=NA GSM=GSM605330 dateUnrestricted=2011-07-07
track H1_H2BK12ac_03s
bigDataUrl H1_H2BK12ac_03.bigWig
shortLabel H1 H2BK12ac 03
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.202 Pcnt=50 Library:SAK203)
type bigWig 0 90000
parent containersampleH1
color 175,238,238
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.202 Hotspot_Percentile=50 GSM=GSM605297 dateUnrestricted=2011-07-07
track H1_H2BK12ac_93s
bigDataUrl H1_H2BK12ac_93.bigWig
shortLabel H1 H2BK12ac 93
longLabel H1 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1846 Pcnt=25 Library:YL93)
type bigWig 0 90000
parent containersampleH1
color 175,238,238
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.1846 Hotspot_Percentile=25 GSM=GSM605296 dateUnrestricted=2011-07-07
track H1_H3K23me2_10s
bigDataUrl H1_H3K23me2_10.bigWig
shortLabel H1 H3K23me2 10
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3013 Pcnt=100 Library:SAK210)
type bigWig 0 90000
parent containersampleH1
color 0,110,120
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.3013 Hotspot_Percentile=100 GSM=GSM605306 dateUnrestricted=2011-07-07
track H1_H3K23me2_98s
bigDataUrl H1_H3K23me2_98.bigWig
shortLabel H1 H3K23me2 98
longLabel H1 Cell Line H3K23me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.091 Pcnt=50 Library:YL198)
type bigWig 0 90000
parent containersampleH1
color 0,110,120
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=52 medium=mTeSER Sex=Male batch=H1Ep52 experiment_type="Histone H3K23me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab2370 chip_antibody_lot=13694 Hotspot_Score=0.091 Hotspot_Percentile=50 GSM=GSM605305 dateUnrestricted=2011-07-07
track H1_H3K4me1_28s
bigDataUrl H1_H3K4me1_28.bigWig
shortLabel H1 H3K4me1 28
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1997 Pcnt=12 Library:LL228)
type bigWig 0 90000
parent containersampleH1
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.1997 Hotspot_Percentile=12 GSM=GSM409307 dateUnrestricted=2010-05-03
track H1_H3K4me1_11s
bigDataUrl H1_H3K4me1_11.bigWig
shortLabel H1 H3K4me1 11
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.34 Pcnt=33 Library:LL311)
type bigWig 0 90000
parent containersampleH1
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Upstate chip_antibody_catalog=07-436 chip_antibody_lot=DAM1400139 Hotspot_Score=0.34 Hotspot_Percentile=33 GSM=GSM466739 dateUnrestricted=2010-10-07
track H1_H3K4me1_31s
bigDataUrl H1_H3K4me1_31.bigWig
shortLabel H1 H3K4me1 31
longLabel H1 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3905 Pcnt=58 Library:YL131)
type bigWig 0 90000
parent containersampleH1
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=27 medium=mTeSER Sex=Male batch=H1Jp27(16) experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.3905 Hotspot_Percentile=58 GSM=GSM605312 dateUnrestricted=2011-07-07
track H1_H3K79me2_80s
bigDataUrl H1_H3K79me2_80.bigWig
shortLabel H1 H3K79me2 80
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1512 Pcnt=25 Library:SAK80)
type bigWig 0 90000
parent containersampleH1
color 200,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1512 Hotspot_Percentile=25 GSM=GSM605321 dateUnrestricted=2011-07-07
track H1_H3K79me2_04s
bigDataUrl H1_H3K79me2_04.bigWig
shortLabel H1 H3K79me2 04
longLabel H1 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1514 Pcnt=50 Library:YL204)
type bigWig 0 90000
parent containersampleH1
color 200,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.1514 Hotspot_Percentile=50 GSM=GSM605322 dateUnrestricted=2011-07-07
track H1_H4K91ac_54s
bigDataUrl H1_H4K91ac_54.bigWig
shortLabel H1 H4K91ac 54
longLabel H1 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1945 Pcnt=33 Library:YL254)
type bigWig 0 90000
parent containersampleH1
color 0,150,150
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.1945 Hotspot_Percentile=33 GSM=GSM605332 dateUnrestricted=2011-07-07
track H1_H2BK15ac_04s
bigDataUrl H1_H2BK15ac_04.bigWig
shortLabel H1 H2BK15ac 04
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1444 Pcnt=40 Library:SAK204)
type bigWig 0 90000
parent containersampleH1
color 200,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1444 Hotspot_Percentile=40 GSM=GSM605299 dateUnrestricted=2011-07-07
track H1_H2BK15ac_06s
bigDataUrl H1_H2BK15ac_06.bigWig
shortLabel H1 H2BK15ac 06
longLabel H1 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1067 Pcnt=20 Library:YL206)
type bigWig 0 90000
parent containersampleH1
color 200,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.1067 Hotspot_Percentile=20 GSM=GSM605298 dateUnrestricted=2011-07-07
track H1_H3K27ac_13s
bigDataUrl H1_H3K27ac_13.bigWig
shortLabel H1 H3K27ac 13
longLabel H1 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3968 Pcnt=50 Library:LL313)
type bigWig 0 90000
parent containersampleH1
color 142,229,238
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER sex=Male batch=#1 experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.3968 Hotspot_Percentile=50 GSM=GSM466732 dateUnrestricted=2010-12-22
track H1_H3K4me2_22s
bigDataUrl H1_H3K4me2_22.bigWig
shortLabel H1 H3K4me2 22
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6394 Pcnt=75 Library:LL322)
type bigWig 0 90000
parent containersampleH1
color 0,82,41
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6394 Hotspot_Percentile=75 GSM=GSM602260 dateUnrestricted=2011-07-07
track H1_H3K4me2_96s
bigDataUrl H1_H3K4me2_96.bigWig
shortLabel H1 H3K4me2 96
longLabel H1 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5517 Pcnt=50 Library:YL96)
type bigWig 0 90000
parent containersampleH1
color 0,82,41
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.5517 Hotspot_Percentile=50 GSM=GSM602261 dateUnrestricted=2011-07-07
track H1_H3K9ac_40s
bigDataUrl H1_H3K9ac_40.bigWig
shortLabel H1 H3K9ac 40
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2413 Pcnt=51 Library:LL240)
type bigWig 0 90000
parent containersampleH1
color 0,168,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER sex=Male experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.2413 Hotspot_Percentile=51 GSM=GSM434785 dateUnrestricted=2010-05-03
track H1_H3K9ac_68s
bigDataUrl H1_H3K9ac_68.bigWig
shortLabel H1 H3K9ac 68
longLabel H1 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.241 Pcnt=49 Library:SAK68)
type bigWig 0 90000
parent containersampleH1
color 0,168,0
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.241 Hotspot_Percentile=49 GSM=GSM605323 dateUnrestricted=2011-07-07
track H1_Input_19s
bigDataUrl H1_Input_19.bigWig
shortLabel H1 Input 19
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1569 Pcnt=83 Library:DM219)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=55 medium=mTeSER Sex=Male batch=H1Ep55 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1569 Hotspot_Percentile=83 GSM=GSM605338 dateUnrestricted=2011-07-07
track H1_Input_I1s
bigDataUrl H1_Input_I1.bigWig
shortLabel H1 Input I1
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1133 Pcnt=77 Library:LL-H1-I1)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 25 and 45" medium=mTeSER Sex=Male batch=#1 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1133 Hotspot_Percentile=77 GSM=GSM605333 dateUnrestricted=2011-07-07
track H1_Input_I2s
bigDataUrl H1_Input_I2.bigWig
shortLabel H1 Input I2
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1532 Pcnt=82 Library:LL-H1-I2)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="Cellular Dynamics International" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 30 and 50" medium=mTeSER Sex=Male experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1532 Hotspot_Percentile=82 GSM=GSM605334 dateUnrestricted=2011-07-07
track H1_Input_1Us
bigDataUrl H1_Input_1U.bigWig
shortLabel H1 Input 1U
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.187 Pcnt=88 Library:LLH1U)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage="Between 20 and 40" medium=mTeSER Sex=Male batch=H1U experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.187 Hotspot_Percentile=88 GSM=GSM605339 dateUnrestricted=2011-07-07
track H1_Input_54s
bigDataUrl H1_Input_54.bigWig
shortLabel H1 Input 54
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1195 Pcnt=79 Library:YL154)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=51 medium=mTeSER Sex=Male batch=H1Ep51 experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1195 Hotspot_Percentile=79 GSM=GSM605337 dateUnrestricted=2011-07-07
track H1_Input_08s
bigDataUrl H1_Input_08.bigWig
shortLabel H1 Input 08
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.083 Pcnt=65 Library:YL208)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-20x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.083 Hotspot_Percentile=65 GSM=GSM605335 dateUnrestricted=2011-07-07
track H1_Input_62s
bigDataUrl H1_Input_62.bigWig
shortLabel H1 Input 62
longLabel H1 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.0803 Pcnt=59 Library:YL262)
type bigWig 0 90000
parent containersampleH1
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider="James Thompson Laboratory" biomaterial_type="Cell Line" line=H1 lineage="Embryonic Stem Cell" differentiation_stage=None differentiation_method=None passage=54 medium=mTeSER Sex=Male batch=H1Ep54-25x experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.0803 Hotspot_Percentile=59 GSM=GSM605336 dateUnrestricted=2011-07-07
track containersampleIMR90
container multiWig
superTrack edaccContainerTracksbySample full
shortLabel IMR90 Summary
longLabel EDACC Release2 IMR90 Cell Line Data Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track IMR90_DNase_59s
bigDataUrl IMR90_DNase_59.bigWig
shortLabel IMR90 DNase 59 59
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2914 Pcnt=5 DonorID:NA)
type bigWig 0 90000
parent containersampleIMR90
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2914 Hotspot_Percentile=5 GSM=GSM468792 dateUnrestricted=2010-10-06
track IMR90_DNase_64s
bigDataUrl IMR90_DNase_64.bigWig
shortLabel IMR90 DNase 64 64
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.2892 Pcnt=2 DonorID:NA)
type bigWig 0 90000
parent containersampleIMR90
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.2892 Hotspot_Percentile=2 GSM=GSM468801 dateUnrestricted=2010-10-06
track IMR90_DNase_19s
bigDataUrl IMR90_DNase_19.bigWig
shortLabel IMR90 DNase 19 19
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4554 Pcnt=57 Library:DS13219)
type bigWig 0 90000
parent containersampleIMR90
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4554 Hotspot_Percentile=57 GSM=GSM530665 dateUnrestricted=2011-01-28
track IMR90_DNase_29s
bigDataUrl IMR90_DNase_29.bigWig
shortLabel IMR90 DNase 29 29
longLabel IMR90 DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3425 Pcnt=15 Library:DS13229)
type bigWig 0 90000
parent containersampleIMR90
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Eagle's Minimum Essential Medium, Catalog No. 30-2003." Sex=Female batch=CCL-186 experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3425 Hotspot_Percentile=15 GSM=GSM530666 dateUnrestricted=2011-01-28
track IMR90_BisulfiteSeq_eds
bigDataUrl IMR90_BisulfiteSeq_ed.bigWig
shortLabel IMR90 BS 1a
longLabel IMR90 Cell Line DNA Methylation by Bisulfite-seq Signal from REMC/UCSD (Library:methylC-seq_imr90_r1a)
type bigWig 0 90000
parent containersampleIMR90
color 0,0,133
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="DNA Methylation" extraction_protocol="Qiagen DNeasy mini kit, performed as per manufacturer's instructions'" extraction_protocol_type_of_sonicator="Diagenode Bioruptor" extraction_protocol_sonication_cycles="20 cycles of" dna_preparation_initial_dna_qnty="5 µg" dna_preparation_fragment_size_range="50-500 bp" dna_preparation_adaptor_sequence=A dna_preparation_adaptor_ligation_protocol="Standard Illumina genomic DNA library preparation ligation protocol (15 minutes at room temperature), except the adapters contained methylcytosine and were supplied by Illumina" dna_preparation_post-ligation_fragment_size_selection="Separation by electrophoresis on a 2% agarose gel followed by excision of 140-210 bp fragments" bisulfite_conversion_protocol="Standard Human Genetic Signatures MethylEasy Xceed bisulfite conversion kit protocol" bisulfite_conversion_percent="99.6% of cytosines converted based on shotgun sequencing of unmethylated lambda phage control spiked into original genomic DNA sample" library_generation_pcr_template_conc="One third of the 140-210 nt adapter-ligated, bisulfite converted DNA was used in each 50 µl PCR reaction" library_generation_pcr_polymerase_type="Stratagene Pfu Turbo Cx" library_generation_pcr_thermocycling_program="95˚C 2 min; 98˚C 30 sec, 4 cycles of 98˚C 15 sec, 60˚C 30 sec, 72˚C 4 min; 72˚C 10 min" library_generation_pcr_number_cycles=4 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc="25 µM" library_generation_pcr_product_isolation_protocol="Separation by electrophoresis on a 2% agarose gel followed by excision of 180-300 bp fragments." Bisulfite_Conversion_Percentage_Based_On_Mappings=99.43 GSM=GSM432687 dateUnrestricted=2010-07-13
track IMR90_Input_5I1s
bigDataUrl IMR90_Input_5I1.bigWig
shortLabel IMR90 Input 05I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2108 Pcnt=89 Library:IMR90-05-I1)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2108 Hotspot_Percentile=89 GSM=GSM521930 dateUnrestricted=2010-12-22
track IMR90_Input_6I1s
bigDataUrl IMR90_Input_6I1.bigWig
shortLabel IMR90 Input 06I1
longLabel IMR90 Histone Modification Input by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2126 Pcnt=91 Library:IMR90-06-I1)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2126 Hotspot_Percentile=91 GSM=GSM521931 dateUnrestricted=2010-12-22
track IMR90_Input_7I1s
bigDataUrl IMR90_Input_7I1.bigWig
shortLabel IMR90 Input 07I1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2408 Pcnt=97 Library:IMR90-07-I1)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2408 Hotspot_Percentile=97 GSM=GSM521932 dateUnrestricted=2010-12-22
track IMR90_Input_LI1s
bigDataUrl IMR90_Input_LI1.bigWig
shortLabel IMR90 Input LLI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.244 Pcnt=100 Library:LL-I1)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.244 Hotspot_Percentile=100 GSM=GSM521926 dateUnrestricted=2010-12-22
track IMR90_Input_LI2s
bigDataUrl IMR90_Input_LI2.bigWig
shortLabel IMR90 Input LLI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2434 Pcnt=98 Library:LL-I2)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2434 Hotspot_Percentile=98 GSM=GSM521927 dateUnrestricted=2010-12-22
track IMR90_Input_KI1s
bigDataUrl IMR90_Input_KI1.bigWig
shortLabel IMR90 Input SKI1
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2235 Pcnt=94 Library:SK-I1)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.2235 Hotspot_Percentile=94 GSM=GSM521928 dateUnrestricted=2010-12-22
track IMR90_Input_KI2s
bigDataUrl IMR90_Input_KI2.bigWig
shortLabel IMR90 Input SKI2
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.226 Pcnt=95 Library:SK-I2)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.226 Hotspot_Percentile=95 GSM=GSM521929 dateUnrestricted=2010-12-22
track IMR90_Input_KI3s
bigDataUrl IMR90_Input_KI3.bigWig
shortLabel IMR90 Input SKI3
longLabel IMR90 Cell Line Input Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1603 Pcnt=86 Library:SK-I3)
type bigWig 0 90000
parent containersampleIMR90
color 135,206,250
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="ChIP-Seq Input" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol=Input chip_protocol_chromatin_amount="500 micrograms" Hotspot_Score=0.1603 Hotspot_Percentile=86 GSM=GSM521933 dateUnrestricted=2010-12-22
track IMR90_H2AK5ac_L20s
bigDataUrl IMR90_H2AK5ac_L20.bigWig
shortLabel IMR90 H2AK5ac 20
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4734 Pcnt=NA Library:YL20)
type bigWig 0 90000
parent containersampleIMR90
color 194,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab45152 chip_antibody_lot=496800 Hotspot_Score=0.4734 Hotspot_Percentile=NA GSM=GSM521866 dateUnrestricted=2010-12-22
track IMR90_H2AK5ac_L60s
bigDataUrl IMR90_H2AK5ac_L60.bigWig
shortLabel IMR90 H2AK5ac 60
longLabel IMR90 Cell Line H2AK5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4598 Pcnt=50 Library:YL60)
type bigWig 0 90000
parent containersampleIMR90
color 194,97,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2AK5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2AK5ac chip_antibody_provider=Abcam chip_antibody_catalog=ab5152 chip_antibody_lot=496800 Hotspot_Score=0.4598 Hotspot_Percentile=50 GSM=GSM521868 dateUnrestricted=2010-12-22
track IMR90_H2BK120ac_K15s
bigDataUrl IMR90_H2BK120ac_K15.bigWig
shortLabel IMR90 H2BK120ac 15
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5479 Pcnt=100 Library:SK15)
type bigWig 0 90000
parent containersampleIMR90
color 0,168,84
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.5479 Hotspot_Percentile=100 GSM=GSM521870 dateUnrestricted=2010-12-22
track IMR90_H2BK120ac_L06s
bigDataUrl IMR90_H2BK120ac_L06.bigWig
shortLabel IMR90 H2BK120ac 06
longLabel IMR90 Cell Line H2BK120ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.492 Pcnt=67 Library:YL06)
type bigWig 0 90000
parent containersampleIMR90
color 0,168,84
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK120ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK120ac chip_antibody_provider=Upstate chip_antibody_catalog=07-567 chip_antibody_lot=26872 Hotspot_Score=0.492 Hotspot_Percentile=67 GSM=GSM521869 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_138s
bigDataUrl IMR90_H2BK12ac_138.bigWig
shortLabel IMR90 H2BK12ac 38
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5271 Pcnt=100 Library:YL138)
type bigWig 0 90000
parent containersampleIMR90
color 175,238,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.5271 Hotspot_Percentile=100 GSM=GSM521874 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_L18s
bigDataUrl IMR90_H2BK12ac_L18.bigWig
shortLabel IMR90 H2BK12ac 18
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.502 Pcnt=75 Library:YL18)
type bigWig 0 90000
parent containersampleIMR90
color 175,238,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=451732 Hotspot_Score=0.502 Hotspot_Percentile=75 GSM=GSM521871 dateUnrestricted=2010-12-22
track IMR90_H2BK12ac_L68s
bigDataUrl IMR90_H2BK12ac_L68.bigWig
shortLabel IMR90 H2BK12ac 68
longLabel IMR90 Cell Line H2BK12ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.523 Pcnt=100 Library:YL68)
type bigWig 0 90000
parent containersampleIMR90
color 175,238,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK12ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK12ac chip_antibody_provider=Abcam chip_antibody_catalog=ab40883 chip_antibody_lot=727056 Hotspot_Score=0.523 Hotspot_Percentile=100 GSM=GSM521873 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_K42s
bigDataUrl IMR90_H2BK15ac_K42.bigWig
shortLabel IMR90 H2BK15ac 42
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4116 Pcnt=80 Library:SK42)
type bigWig 0 90000
parent containersampleIMR90
color 200,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4116 Hotspot_Percentile=80 GSM=GSM521878 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L19s
bigDataUrl IMR90_H2BK15ac_L19.bigWig
shortLabel IMR90 H2BK15ac 19
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4578 Pcnt=100 Library:YL19)
type bigWig 0 90000
parent containersampleIMR90
color 200,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=457743 Hotspot_Score=0.4578 Hotspot_Percentile=100 GSM=GSM521875 dateUnrestricted=2010-12-22
track IMR90_H2BK15ac_L69s
bigDataUrl IMR90_H2BK15ac_L69.bigWig
shortLabel IMR90 H2BK15ac 69
longLabel IMR90 Cell Line H2BK15ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2964 Pcnt=60 Library:YL69)
type bigWig 0 90000
parent containersampleIMR90
color 200,0,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK15ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK15ac chip_antibody_provider=Abcam chip_antibody_catalog=ab62335 chip_antibody_lot=727058 Hotspot_Score=0.2964 Hotspot_Percentile=60 GSM=GSM521877 dateUnrestricted=2010-12-22
track IMR90_H2BK20ac_K14s
bigDataUrl IMR90_H2BK20ac_K14.bigWig
shortLabel IMR90 H2BK20ac 14
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4474 Pcnt=100 Library:SK14)
type bigWig 0 90000
parent containersampleIMR90
color 0,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.4474 Hotspot_Percentile=100 GSM=GSM521880 dateUnrestricted=2010-12-22
track IMR90_H2BK20ac_L07s
bigDataUrl IMR90_H2BK20ac_L07.bigWig
shortLabel IMR90 H2BK20ac 07
longLabel IMR90 Cell Line H2BK20ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3776 Pcnt=75 Library:YL07)
type bigWig 0 90000
parent containersampleIMR90
color 0,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H2BK20ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H2BK20ac chip_antibody_provider=Upstate chip_antibody_catalog=07-347 chip_antibody_lot=22355 Hotspot_Score=0.3776 Hotspot_Percentile=75 GSM=GSM521879 dateUnrestricted=2010-12-22
track IMR90_H3K14ac_K17s
bigDataUrl IMR90_H3K14ac_K17.bigWig
shortLabel IMR90 H3K14ac 17
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3307 Pcnt=50 Library:SK17)
type bigWig 0 90000
parent containersampleIMR90
color 51,161,201
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.3307 Hotspot_Percentile=50 GSM=GSM521883 dateUnrestricted=2010-12-22
track IMR90_H3K14ac_L15s
bigDataUrl IMR90_H3K14ac_L15.bigWig
shortLabel IMR90 H3K14ac 15
longLabel IMR90 Cell Line H3K14ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.367 Pcnt=100 Library:YL15)
type bigWig 0 90000
parent containersampleIMR90
color 51,161,201
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K14ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K14ac chip_antibody_provider=Upstate chip_antibody_catalog=07-353 chip_antibody_lot=1462567 Hotspot_Score=0.367 Hotspot_Percentile=100 GSM=GSM521881 dateUnrestricted=2010-12-22
track IMR90_H3K18ac_230s
bigDataUrl IMR90_H3K18ac_230.bigWig
shortLabel IMR90 H3K18ac 30
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6076 Pcnt=100 Library:LL230)
type bigWig 0 90000
parent containersampleIMR90
color 198,226,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.6076 Hotspot_Percentile=100 GSM=GSM469965 dateUnrestricted=2010-12-22
track IMR90_H3K18ac_K09s
bigDataUrl IMR90_H3K18ac_K09.bigWig
shortLabel IMR90 H3K18ac 09
longLabel IMR90 Cell Line H3K18ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5626 Pcnt=75 Library:SK09)
type bigWig 0 90000
parent containersampleIMR90
color 198,226,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K18ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K18ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab1191 chip_antibody_lot=122116 Hotspot_Score=0.5626 Hotspot_Percentile=75 GSM=GSM521884 dateUnrestricted=2010-12-22
track IMR90_H3K23ac_K18s
bigDataUrl IMR90_H3K23ac_K18.bigWig
shortLabel IMR90 H3K23ac 18
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3105 Pcnt=100 Library:SK18)
type bigWig 0 90000
parent containersampleIMR90
color 0,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.3105 Hotspot_Percentile=100 GSM=GSM521886 dateUnrestricted=2010-12-22
track IMR90_H3K23ac_L09s
bigDataUrl IMR90_H3K23ac_L09.bigWig
shortLabel IMR90 H3K23ac 09
longLabel IMR90 Cell Line H3K23ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2996 Pcnt=50 Library:YL09)
type bigWig 0 90000
parent containersampleIMR90
color 0,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K23ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K23ac chip_antibody_provider=Upstate chip_antibody_catalog=07-355 chip_antibody_lot=502497 Hotspot_Score=0.2996 Hotspot_Percentile=50 GSM=GSM521885 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_231s
bigDataUrl IMR90_H3K27ac_231.bigWig
shortLabel IMR90 H3K27ac 31
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6371 Pcnt=67 Library:LL231)
type bigWig 0 90000
parent containersampleIMR90
color 142,229,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.6371 Hotspot_Percentile=67 GSM=GSM469966 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_235s
bigDataUrl IMR90_H3K27ac_235.bigWig
shortLabel IMR90 H3K27ac 35
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7232 Pcnt=100 Library:LL235)
type bigWig 0 90000
parent containersampleIMR90
color 142,229,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=454269 Hotspot_Score=0.7232 Hotspot_Percentile=100 GSM=GSM469967 dateUnrestricted=2010-12-22
track IMR90_H3K27ac_L58s
bigDataUrl IMR90_H3K27ac_L58.bigWig
shortLabel IMR90 H3K27ac 58
longLabel IMR90 Cell Line H3K27ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7 Pcnt=83 Library:YL58)
type bigWig 0 90000
parent containersampleIMR90
color 142,229,238
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4729 chip_antibody_lot=34624 Hotspot_Score=0.7 Hotspot_Percentile=83 GSM=GSM521887 dateUnrestricted=2010-12-22
track IMR90_H3K27me3_223s
bigDataUrl IMR90_H3K27me3_223.bigWig
shortLabel IMR90 H3K27me3 23
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.386 Pcnt=96 Library:LL223)
type bigWig 0 90000
parent containersampleIMR90
color 255,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.386 Hotspot_Percentile=96 GSM=GSM469968 dateUnrestricted=2010-10-07
track IMR90_H3K27me3_K05s
bigDataUrl IMR90_H3K27me3_K05.bigWig
shortLabel IMR90 H3K27me3 05
longLabel IMR90 Cell Line H3K27me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2404 Pcnt=54 Library:SK05)
type bigWig 0 90000
parent containersampleIMR90
color 255,182,193
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K27me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K27me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.2404 Hotspot_Percentile=54 GSM=GSM521889 dateUnrestricted=2010-12-22
track IMR90_H3K36me3_225s
bigDataUrl IMR90_H3K36me3_225.bigWig
shortLabel IMR90 H3K36me3 25
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4615 Pcnt=98 Library:LL225)
type bigWig 0 90000
parent containersampleIMR90
color 0,194,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=475787 Hotspot_Score=0.4615 Hotspot_Percentile=98 GSM=GSM521890 dateUnrestricted=2010-12-22
track IMR90_H3K36me3_L67s
bigDataUrl IMR90_H3K36me3_L67.bigWig
shortLabel IMR90 H3K36me3 67
longLabel IMR90 Cell Line H3K36me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4485 Pcnt=94 Library:YL67)
type bigWig 0 90000
parent containersampleIMR90
color 0,194,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K36me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K36me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=707946 Hotspot_Score=0.4485 Hotspot_Percentile=94 GSM=GSM521892 dateUnrestricted=2010-12-22
track IMR90_H3K4ac_239s
bigDataUrl IMR90_H3K4ac_239.bigWig
shortLabel IMR90 H3K4ac 39
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5219 Pcnt=100 Library:LL239)
type bigWig 0 90000
parent containersampleIMR90
color 255,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.5219 Hotspot_Percentile=100 GSM=GSM521893 dateUnrestricted=2010-12-22
track IMR90_H3K4ac_K16s
bigDataUrl IMR90_H3K4ac_K16.bigWig
shortLabel IMR90 H3K4ac 16
longLabel IMR90 Cell Line H3K4ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4939 Pcnt=67 Library:SK16)
type bigWig 0 90000
parent containersampleIMR90
color 255,255,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4ac chip_antibody_provider=Upstate chip_antibody_catalog=07-539 chip_antibody_lot=26747 Hotspot_Score=0.4939 Hotspot_Percentile=67 GSM=GSM521894 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_222s
bigDataUrl IMR90_H3K4me1_222.bigWig
shortLabel IMR90 H3K4me1 22
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5529 Pcnt=88 Library:LL222)
type bigWig 0 90000
parent containersampleIMR90
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5529 Hotspot_Percentile=88 GSM=GSM521895 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_K04s
bigDataUrl IMR90_H3K4me1_K04.bigWig
shortLabel IMR90 H3K4me1 04
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5718 Pcnt=93 Library:SK04)
type bigWig 0 90000
parent containersampleIMR90
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=535659 Hotspot_Score=0.5718 Hotspot_Percentile=93 GSM=GSM521897 dateUnrestricted=2010-12-22
track IMR90_H3K4me1_133s
bigDataUrl IMR90_H3K4me1_133.bigWig
shortLabel IMR90 H3K4me1 33
longLabel IMR90 Cell Line H3K4me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6392 Pcnt=100 Library:SYL133)
type bigWig 0 90000
parent containersampleIMR90
color 0,250,66
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=720417 Hotspot_Score=0.6392 Hotspot_Percentile=100 GSM=GSM521898 dateUnrestricted=2010-12-22
track IMR90_H3K4me2_232s
bigDataUrl IMR90_H3K4me2_232.bigWig
shortLabel IMR90 H3K4me2 32
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6838 Pcnt=100 Library:LL232)
type bigWig 0 90000
parent containersampleIMR90
color 0,82,41
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6838 Hotspot_Percentile=100 GSM=GSM521899 dateUnrestricted=2010-12-22
track IMR90_H3K4me2_K07s
bigDataUrl IMR90_H3K4me2_K07.bigWig
shortLabel IMR90 H3K4me2 07
longLabel IMR90 Cell Line H3K4me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6402 Pcnt=88 Library:SK07)
type bigWig 0 90000
parent containersampleIMR90
color 0,82,41
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab32356 chip_antibody_lot=577702 Hotspot_Score=0.6402 Hotspot_Percentile=88 GSM=GSM521900 dateUnrestricted=2010-12-22
track IMR90_H3K4me3_221s
bigDataUrl IMR90_H3K4me3_221.bigWig
shortLabel IMR90 H3K4me3 21
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.8482 Pcnt=100 Library:LL221)
type bigWig 0 90000
parent containersampleIMR90
color 0,250,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=unknown Hotspot_Score=0.8482 Hotspot_Percentile=100 GSM=GSM469970 dateUnrestricted=2010-10-07
track IMR90_H3K4me3_K03s
bigDataUrl IMR90_H3K4me3_K03.bigWig
shortLabel IMR90 H3K4me3 03
longLabel IMR90 Cell Line H3K4me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.7673 Pcnt=98 Library:SK03)
type bigWig 0 90000
parent containersampleIMR90
color 0,250,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K4me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K4me3 chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39159 chip_antibody_lot=15808002 Hotspot_Score=0.7673 Hotspot_Percentile=98 GSM=GSM521901 dateUnrestricted=2010-12-22
track IMR90_H3K56ac_L05s
bigDataUrl IMR90_H3K56ac_L05.bigWig
shortLabel IMR90 H3K56ac 05
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3288 Pcnt=100 Library:YL05)
type bigWig 0 90000
parent containersampleIMR90
color 0,255,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3288 Hotspot_Percentile=100 GSM=GSM521902 dateUnrestricted=2010-12-22
track IMR90_H3K56ac_L61s
bigDataUrl IMR90_H3K56ac_L61.bigWig
shortLabel IMR90 H3K56ac 61
longLabel IMR90 Cell Line H3K56ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3096 Pcnt=67 Library:YL61)
type bigWig 0 90000
parent containersampleIMR90
color 0,255,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K56ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K56ac chip_antibody_provider=Upstate chip_antibody_catalog=07-677 chip_antibody_lot=DAM1462569 Hotspot_Score=0.3096 Hotspot_Percentile=67 GSM=GSM521903 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_K11s
bigDataUrl IMR90_H3K79me1_K11.bigWig
shortLabel IMR90 H3K79me1 11
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2999 Pcnt=57 Library:SK11)
type bigWig 0 90000
parent containersampleIMR90
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=3 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=Ab2886 chip_antibody_lot=502497 Hotspot_Score=0.2999 Hotspot_Percentile=57 GSM=GSM521906 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_103s
bigDataUrl IMR90_H3K79me1_103.bigWig
shortLabel IMR90 H3K79me1 03
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3893 Pcnt=100 Library:YL103)
type bigWig 0 90000
parent containersampleIMR90
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=527479 Hotspot_Score=0.3893 Hotspot_Percentile=100 GSM=GSM521907 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_145s
bigDataUrl IMR90_H3K79me1_145.bigWig
shortLabel IMR90 H3K79me1 45
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3555 Pcnt=86 Library:YL145)
type bigWig 0 90000
parent containersampleIMR90
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886 chip_antibody_lot=679856 Hotspot_Score=0.3555 Hotspot_Percentile=86 GSM=GSM521908 dateUnrestricted=2010-12-22
track IMR90_H3K79me1_L16s
bigDataUrl IMR90_H3K79me1_L16.bigWig
shortLabel IMR90 H3K79me1 16
longLabel IMR90 Cell Line H3K79me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3182 Pcnt=71 Library:YL16)
type bigWig 0 90000
parent containersampleIMR90
color 255,0,255
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab2886-100 chip_antibody_lot=502497 Hotspot_Score=0.3182 Hotspot_Percentile=71 GSM=GSM521904 dateUnrestricted=2010-12-22
track IMR90_H3K79me2_238s
bigDataUrl IMR90_H3K79me2_238.bigWig
shortLabel IMR90 H3K79me2 38
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4094 Pcnt=75 Library:LL238)
type bigWig 0 90000
parent containersampleIMR90
color 200,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4094 Hotspot_Percentile=75 GSM=GSM521909 dateUnrestricted=2010-12-22
track IMR90_H3K79me2_K43s
bigDataUrl IMR90_H3K79me2_K43.bigWig
shortLabel IMR90 H3K79me2 43
longLabel IMR90 Cell Line H3K79me2 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4768 Pcnt=100 Library:SK43)
type bigWig 0 90000
parent containersampleIMR90
color 200,200,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K79me2" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K79me2 chip_antibody_provider=Abcam chip_antibody_catalog=ab3594 chip_antibody_lot=573640 Hotspot_Score=0.4768 Hotspot_Percentile=100 GSM=GSM521911 dateUnrestricted=2010-12-22
track IMR90_H3K9ac_233s
bigDataUrl IMR90_H3K9ac_233.bigWig
shortLabel IMR90 H3K9ac 33
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5371 Pcnt=91 Library:LL233)
type bigWig 0 90000
parent containersampleIMR90
color 0,168,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider=Abcam chip_antibody_catalog=Ab4441 chip_antibody_lot=511238 Hotspot_Score=0.5371 Hotspot_Percentile=91 GSM=GSM469973 dateUnrestricted=2010-12-22
track IMR90_H3K9ac_K46s
bigDataUrl IMR90_H3K9ac_K46.bigWig
shortLabel IMR90 H3K9ac 46
longLabel IMR90 Cell Line H3K9ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.6246 Pcnt=97 Library:SK46)
type bigWig 0 90000
parent containersampleIMR90
color 0,168,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9ac chip_antibody_provider="Active Motif" chip_antibody_catalog=AM39137 chip_antibody_lot=1008001 Hotspot_Score=0.6246 Hotspot_Percentile=97 GSM=GSM521912 dateUnrestricted=2010-12-22
track IMR90_H3K9me3_224s
bigDataUrl IMR90_H3K9me3_224.bigWig
shortLabel IMR90 H3K9me3 24
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2682 Pcnt=85 Library:LL224)
type bigWig 0 90000
parent containersampleIMR90
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484099 Hotspot_Score=0.2682 Hotspot_Percentile=85 GSM=GSM469974 dateUnrestricted=2010-10-07
track IMR90_H3K9me3_K06s
bigDataUrl IMR90_H3K9me3_K06.bigWig
shortLabel IMR90 H3K9me3 06
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.1913 Pcnt=64 Library:SK06)
type bigWig 0 90000
parent containersampleIMR90
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=Ab8896 chip_antibody_lot=484099 Hotspot_Score=0.1913 Hotspot_Percentile=64 GSM=GSM521913 dateUnrestricted=2010-12-22
track IMR90_H3K9me3_104s
bigDataUrl IMR90_H3K9me3_104.bigWig
shortLabel IMR90 H3K9me3 04
longLabel IMR90 Cell Line H3K9me3 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.3143 Pcnt=88 Library:YL104)
type bigWig 0 90000
parent containersampleIMR90
color 255,215,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H3K9me3" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=699671 Hotspot_Score=0.3143 Hotspot_Percentile=88 GSM=GSM521914 dateUnrestricted=2010-12-22
track IMR90_H4K20me1_L21s
bigDataUrl IMR90_H4K20me1_L21.bigWig
shortLabel IMR90 H4K20me1 21
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.2312 Pcnt=67 Library:YL21)
type bigWig 0 90000
parent containersampleIMR90
color 0,200,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.2312 Hotspot_Percentile=67 GSM=GSM521915 dateUnrestricted=2010-12-22
track IMR90_H4K20me1_L59s
bigDataUrl IMR90_H4K20me1_L59.bigWig
shortLabel IMR90 H4K20me1 59
longLabel IMR90 Cell Line H4K20me1 Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.346 Pcnt=100 Library:YL59)
type bigWig 0 90000
parent containersampleIMR90
color 0,200,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K20me1" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K20me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab9051 chip_antibody_lot=519198 Hotspot_Score=0.346 Hotspot_Percentile=100 GSM=GSM521917 dateUnrestricted=2010-12-22
track IMR90_H4K5ac_234s
bigDataUrl IMR90_H4K5ac_234.bigWig
shortLabel IMR90 H4K5ac 34
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5581 Pcnt=100 Library:LL234)
type bigWig 0 90000
parent containersampleIMR90
color 200,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=#1 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=4 medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator="Branson Tip Sonicator" extraction_protocol_sonication_cycles=30 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5581 Hotspot_Percentile=100 GSM=GSM469975 dateUnrestricted=2010-12-22
track IMR90_H4K5ac_K08s
bigDataUrl IMR90_H4K5ac_K08.bigWig
shortLabel IMR90 H4K5ac 08
longLabel IMR90 Cell Line H4K5ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5026 Pcnt=75 Library:SK08)
type bigWig 0 90000
parent containersampleIMR90
color 200,0,200
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=4 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K5ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K5ac chip_antibody_provider=Upstate chip_antibody_catalog=07-327 chip_antibody_lot=30417 Hotspot_Score=0.5026 Hotspot_Percentile=75 GSM=GSM521918 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_K45s
bigDataUrl IMR90_H4K8ac_K45.bigWig
shortLabel IMR90 H4K8ac 45
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5364 Pcnt=100 Library:SK45)
type bigWig 0 90000
parent containersampleIMR90
color 150,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5364 Hotspot_Percentile=100 GSM=GSM521922 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_142s
bigDataUrl IMR90_H4K8ac_142.bigWig
shortLabel IMR90 H4K8ac 42
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4842 Pcnt=50 Library:YL142)
type bigWig 0 90000
parent containersampleIMR90
color 150,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=7 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=240 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Millipore chip_antibody_catalog=07-328 chip_antibody_lot=DAM1543700 Hotspot_Score=0.4842 Hotspot_Percentile=50 GSM=GSM521923 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_L17s
bigDataUrl IMR90_H4K8ac_L17.bigWig
shortLabel IMR90 H4K8ac 17
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5345 Pcnt=75 Library:YL17)
type bigWig 0 90000
parent containersampleIMR90
color 150,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.5345 Hotspot_Percentile=75 GSM=GSM521919 dateUnrestricted=2010-12-22
track IMR90_H4K8ac_L57s
bigDataUrl IMR90_H4K8ac_L57.bigWig
shortLabel IMR90 H4K8ac 57
longLabel IMR90 Cell Line H4K8ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4645 Pcnt=25 Library:YL57)
type bigWig 0 90000
parent containersampleIMR90
color 150,150,0
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=5 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K8ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=120 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K8ac chip_antibody_provider=Upstate chip_antibody_catalog=07-328 chip_antibody_lot=DAM1487557 Hotspot_Score=0.4645 Hotspot_Percentile=25 GSM=GSM521921 dateUnrestricted=2010-12-22
track IMR90_H4K91ac_K49s
bigDataUrl IMR90_H4K91ac_K49.bigWig
shortLabel IMR90 H4K91ac 49
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.5743 Pcnt=100 Library:SK49)
type bigWig 0 90000
parent containersampleIMR90
color 0,150,150
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=6 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=150 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.5743 Hotspot_Percentile=100 GSM=GSM521925 dateUnrestricted=2010-12-22
track IMR90_H4K91ac_L08s
bigDataUrl IMR90_H4K91ac_L08.bigWig
shortLabel IMR90 H4K91ac 08
longLabel IMR90 Cell Line H4K91ac Histone Modification by Chip-seq Signal from REMC/UCSD (Hotspot_Score=0.4622 Pcnt=67 Library:YL08)
type bigWig 0 90000
parent containersampleIMR90
color 0,150,150
metadata molecule="genomic DNA" disease=None biomaterial_provider=ATCC biomaterial_type="Cell Line" line=IMR90 lineage=NA batch=2 differentiation_stage="Fetal lung fibroblast" differentiation_method=NA passage=NA medium="Minimum Essential Medium, Eagle with Earle's Balanced Salt Solution supplemented with 10% Fetal Bovine Serum (FBS), 1% Pen/Strep (penicillin, streptomycin), 1% GlutaMax (stable form of glutamine)" sex=Female experiment_type="Histone H4K91ac" extraction_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" extraction_protocol_type_of_sonicator=Biorupter extraction_protocol_sonication_cycles=80 chip_protocol="See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf" chip_protocol_chromatin_amount="500 micrograms" chip_protocol_bead_type="magnetic anti-rabbit" chip_protocol_bead_amount=33,500,000 chip_protocol_antibody_amount="5 micrograms" chip_antibody=H4K91ac chip_antibody_provider=Abcam chip_antibody_catalog=ab4627 chip_antibody_lot=82963 Hotspot_Score=0.4622 Hotspot_Percentile=67 GSM=GSM521924 dateUnrestricted=2010-12-22
track containersampleCD34
container multiWig
superTrack edaccContainerTracksbySample full
shortLabel CD34 Summary
longLabel EDACC Release2 CD34 Data Summary
type bigWig 0 90000
configurable on
visibility hide
maxHeightPixels 150:30:11
aggregate transparentOverlay
showSubtrackColorOnUi on
autoScale on
windowingFunction mean
priority 1.4
track CD34_RRBS_515s
bigDataUrl CD34_RRBS_515.bigWig
shortLabel CD34 RRBS 14
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
type bigWig 0 90000
parent containersampleCD34
color 255,105,180
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="130-250 or 180-350" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.52 GSM=GSM621561 dateUnrestricted=2011-08-11
track CD34_RRBS_533s
bigDataUrl CD34_RRBS_533.bigWig
shortLabel CD34 RRBS 32
longLabel CD34 Cell Line DNA Methylation by RRBS Signal from REMC/Broad (DonorID:CD34_0/0/00)
type bigWig 0 90000
parent containersampleCD34
color 255,105,180
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_0/0/00 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="DNA Methylation" extraction_protocol="Standard Protocol (Smith et al., Methods 48, 226-232)" extraction_protocol_type_of_sonicator=NA extraction_protocol_sonication_cycles=NA dna_preparation_initial_dna_qnty="20 ng" dna_preparation_fragment_size_range="40-160 or 90-260" dna_preparation_adaptor_sequence="5' P-GATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG and 5' ACACTCTTTCCCTACACGACGCTCTTCCGATCT" dna_preparation_adaptor_ligation_protocol="T4 Ligase (2,000U/ul) 16C o/n" dna_preparation_post-ligation_fragment_size_selection="180-350 or 130-250" bisulfite_conversion_protocol="2x5hrs Epitect Kit" bisulfite_conversion_percent=>99% library_generation_pcr_template_conc=NA library_generation_pcr_polymerase_type="Pfu Turbo Cx hot start" library_generation_pcr_thermocycling_program="Smith et al., Methods 48, 226-232" library_generation_pcr_number_cycles=15.0 library_generation_pcr_f_primer_sequence="5' AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT" library_generation_pcr_r_primer_sequence="5' CAAGCAGAAGACGGCATACGAGCTCTTCCGATCT" library_generation_pcr_primer_conc=25uM library_generation_pcr_product_isolation_protocol="Gel size selection" Bisulfite_Conversion_Percentage_Based_On_Mappings=99.28 GSM=GSM621559 dateUnrestricted=2011-08-11
track MCD34_Input_8_09s
bigDataUrl MCD34_Input_8_09.bigWig
shortLabel MCD34 Input 28
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.082 Pcnt=64 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.082 Hotspot_Percentile=64 GSM=GSM537662 dateUnrestricted=2011-01-28
track MCD34_Input_1480s
bigDataUrl MCD34_Input_1480.bigWig
shortLabel MCD34 Input 80
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0022 Pcnt=2 DonorID:RO01480)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0022 Hotspot_Percentile=2 GSM=GSM621456 dateUnrestricted=2011-08-12
track MCD34_Input_1549s
bigDataUrl MCD34_Input_1549.bigWig
shortLabel MCD34 Input 49
longLabel Mobilized_CD34_Primary_Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0042 Pcnt=9 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0042 Hotspot_Percentile=9 GSM=GSM621414 dateUnrestricted=2011-08-12
track MCD34_H3K27me3_8_09s
bigDataUrl MCD34_H3K27me3_8_09.bigWig
shortLabel MCD34 H3K27me3 28
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2825 Pcnt=73 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.2825 Hotspot_Percentile=73 GSM=GSM537649 dateUnrestricted=2011-01-28
track MCD34_H3K27me3_1549s
bigDataUrl MCD34_H3K27me3_1549.bigWig
shortLabel MCD34 H3K27me3 49
longLabel Mobilized_CD34_Primary_Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2998 Pcnt=77 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K27Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-449 chip_antibody_provider=Millipore chip_antibody_lot=DAM1662421 experiment_type="Histone H3K27me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2998 Hotspot_Percentile=77 GSM=GSM621431 dateUnrestricted=2011-08-12
track MCD34_H3K36me3_8_09s
bigDataUrl MCD34_H3K36me3_8_09.bigWig
shortLabel MCD34 H3K36me3 28
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4509 Pcnt=96 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.4509 Hotspot_Percentile=96 GSM=GSM537651 dateUnrestricted=2011-01-28
track MCD34_H3K36me3_1480s
bigDataUrl MCD34_H3K36me3_1480.bigWig
shortLabel MCD34 H3K36me3 80
longLabel Mobilized_CD34_Primary_Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1771 Pcnt=23 DonorID:RO01480)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1771 Hotspot_Percentile=23 GSM=GSM621459 dateUnrestricted=2011-08-12
track MCD34_H3K4me1_8_09s
bigDataUrl MCD34_H3K4me1_8_09.bigWig
shortLabel MCD34 H3K4me1 28
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5335 Pcnt=86 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5335 Hotspot_Percentile=86 GSM=GSM537650 dateUnrestricted=2011-01-28
track MCD34_H3K4me1_1549s
bigDataUrl MCD34_H3K4me1_1549.bigWig
shortLabel MCD34 H3K4me1 49
longLabel Mobilized_CD34_Primary_Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4797 Pcnt=74 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 0,250,66
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me1 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8895 chip_antibody_provider=Abcam chip_antibody_lot=151302 experiment_type="Histone H3K4me1" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.4797 Hotspot_Percentile=74 GSM=GSM621451 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_8_09s
bigDataUrl MCD34_H3K4me3_8_09.bigWig
shortLabel MCD34 H3K4me3 28
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.6676 Pcnt=90 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.6676 Hotspot_Percentile=90 GSM=GSM537652 dateUnrestricted=2011-01-28
track MCD34_H3K4me3_1480s
bigDataUrl MCD34_H3K4me3_1480.bigWig
shortLabel MCD34 H3K4me3 80
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2457 Pcnt=16 DonorID:RO01480)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2457 Hotspot_Percentile=16 GSM=GSM621437 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1517s
bigDataUrl MCD34_H3K4me3_1517.bigWig
shortLabel MCD34 H3K4me3 17
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5403 Pcnt=77 DonorID:RO01517)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01517" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5403 Hotspot_Percentile=77 GSM=GSM621404 dateUnrestricted=2011-08-12
track MCD34_H3K4me3_1549s
bigDataUrl MCD34_H3K4me3_1549.bigWig
shortLabel MCD34 H3K4me3 49
longLabel Mobilized_CD34_Primary_Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5962 Pcnt=84 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.5962 Hotspot_Percentile=84 GSM=GSM621439 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_8_09s
bigDataUrl MCD34_H3K9me3_8_09.bigWig
shortLabel MCD34 H3K9me3 28
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3479 Pcnt=95 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3479 Hotspot_Percentile=95 GSM=GSM537663 dateUnrestricted=2011-01-28
track MCD34_H3K9me3_1480s
bigDataUrl MCD34_H3K9me3_1480.bigWig
shortLabel MCD34 H3K9me3 80
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0994 Pcnt=34 DonorID:RO01480)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id="UW RO 01480" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0994 Hotspot_Percentile=34 GSM=GSM621399 dateUnrestricted=2011-08-12
track MCD34_H3K9me3_1549s
bigDataUrl MCD34_H3K9me3_1549.bigWig
shortLabel MCD34 H3K9me3 49
longLabel Mobilized_CD34_Primary_Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3224 Pcnt=92 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01549" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.3224 Hotspot_Percentile=92 GSM=GSM621436 dateUnrestricted=2011-08-12
track CD34_Input_123s
bigDataUrl CD34_Input_123.bigWig
shortLabel CD34 Input 23
longLabel CD34 Cultured Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0062 Pcnt=20 DonorID:123)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded="short term" cell_type="cultured CD34" donor_ethnicity=NA donor_sex=Unknown biomaterial_type="Primary Cell" donor_id=123 biomaterial_provider=FHCRC donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0062 Hotspot_Percentile=20 GSM=GSM621452 dateUnrestricted=2011-08-12
track CD34_H3K27me3_0_09s
bigDataUrl CD34_H3K27me3_0_09.bigWig
shortLabel CD34 H3K27me3 20
longLabel CD34 Cultured Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3021 Pcnt=79 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-449 chip_antibody_lot=DAM1514011 Hotspot_Score=0.3021 Hotspot_Percentile=79 GSM=GSM537656 dateUnrestricted=2011-01-28
track CD34_H3K36me3_0_09s
bigDataUrl CD34_H3K36me3_0_09.bigWig
shortLabel CD34 H3K36me3 20
longLabel CD34 Cultured Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3809 Pcnt=85 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3809 Hotspot_Percentile=85 GSM=GSM537655 dateUnrestricted=2011-01-28
track CD34_H3K4me1_0_09s
bigDataUrl CD34_H3K4me1_0_09.bigWig
shortLabel CD34 H3K4me1 20
longLabel CD34 Cultured Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4056 Pcnt=63 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containersampleCD34
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.4056 Hotspot_Percentile=63 GSM=GSM537628 dateUnrestricted=2011-01-28
track CD34_H3K4me3_0_09s
bigDataUrl CD34_H3K4me3_0_09.bigWig
shortLabel CD34 H3K4me3 20
longLabel CD34 Cultured Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.4645 Pcnt=64 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.4645 Hotspot_Percentile=64 GSM=GSM537629 dateUnrestricted=2011-01-28
track CD34_H3K9me3_0_09s
bigDataUrl CD34_H3K9me3_0_09.bigWig
shortLabel CD34 H3K9me3 20
longLabel CD34 Cultured Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2666 Pcnt=83 DonorID:culturedCD34_2/20/09)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Cultured Cells" markers=CD34+ donor_id="cultured CD34_2/20/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="short term" experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2666 Hotspot_Percentile=83 GSM=GSM537653 dateUnrestricted=2011-01-28
track CD34_Input_9661s
bigDataUrl CD34_Input_9661.bigWig
shortLabel CD34 Input 61
longLabel CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0832 Pcnt=67 DonorID:CD34_39661)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="ChIP-Seq Input" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Input chip_protocol_chromatin_amount=standard Hotspot_Score=0.0832 Hotspot_Percentile=67 GSM=GSM486702 dateUnrestricted=2010-10-06
track CD34_Input_1536s
bigDataUrl CD34_Input_1536.bigWig
shortLabel MCD34 Input 36
longLabel Mobilized CD34 Primary Cells Input Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.0067 Pcnt=23 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 135,206,250
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA extraction_protocol_sonication_cycles=1 chip_protocol_chromatin_amount=standard extraction_protocol="SDS lysis" experiment_type="ChIP-Seq Input" chip_protocol=Input extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.0067 Hotspot_Percentile=23 GSM=GSM621689 dateUnrestricted=2011-08-12
track CD34_H3K27me3_9661s
bigDataUrl CD34_H3K27me3_9661.bigWig
shortLabel CD34 H3K27me3 61
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3095 Pcnt=83 DonorID:CD34_39661)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3095 Hotspot_Percentile=83 GSM=GSM486704 dateUnrestricted=2011-01-28
track CD34_H3K27me3_9804s
bigDataUrl CD34_H3K27me3_9804.bigWig
shortLabel CD34 H3K27me3 04
longLabel CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.214 Pcnt=46 DonorID:CD34_39804)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.214 Hotspot_Percentile=46 GSM=GSM486706 dateUnrestricted=2011-01-28
track CD34_H3K27me3_1536s
bigDataUrl CD34_H3K27me3_1536.bigWig
shortLabel MCD34 H3K27me3 36
longLabel Mobilized CD34 Primary Cells H3K27me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1353 Pcnt=29 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 255,182,193
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K27me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K27Me3 chip_antibody_provider=Upstate chip_antibody_catalog=07-449 chip_antibody_lot=dam151401 Hotspot_Score=0.1353 Hotspot_Percentile=29 GSM=GSM621664 dateUnrestricted=2011-08-12
track CD34_H3K36me3_9661s
bigDataUrl CD34_H3K36me3_9661.bigWig
shortLabel CD34 H3K36me3 61
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3891 Pcnt=87 DonorID:CD34_39661)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39661 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.3891 Hotspot_Percentile=87 GSM=GSM486705 dateUnrestricted=2010-10-06
track CD34_H3K36me3_9811s
bigDataUrl CD34_H3K36me3_9811.bigWig
shortLabel CD34 H3K36me3 11
longLabel CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3251 Pcnt=74 DonorID:CD34_39811)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K36me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K36Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab9050 chip_antibody_lot=136353 Hotspot_Score=0.3251 Hotspot_Percentile=74 GSM=GSM486714 dateUnrestricted=2010-10-06
track CD34_H3K36me3_1536s
bigDataUrl CD34_H3K36me3_1536.bigWig
shortLabel MCD34 H3K36me3 36
longLabel Mobilized CD34 Primary Cells H3K36me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1295 Pcnt=8 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 0,194,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K36Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab9050 chip_antibody_provider=Abcam chip_antibody_lot=761748 experiment_type="Histone H3K36me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1295 Hotspot_Percentile=8 GSM=GSM621666 dateUnrestricted=2011-08-12
track CD34_H3K4me1_9811s
bigDataUrl CD34_H3K4me1_9811.bigWig
shortLabel CD34 H3K4me1 11
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3781 Pcnt=53 DonorID:CD34_39811)
type bigWig 0 90000
parent containersampleCD34
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.3781 Hotspot_Percentile=53 GSM=GSM486708 dateUnrestricted=2011-01-28
track CD34_H3K4me1_9889s
bigDataUrl CD34_H3K4me1_9889.bigWig
shortLabel CD34 H3K4me1 89
longLabel CD34 Primary Cells H3K4me1 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5216 Pcnt=81 DonorID:CD34_39889)
type bigWig 0 90000
parent containersampleCD34
color 0,250,66
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me1" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me1 chip_antibody_provider=Abcam chip_antibody_catalog=ab8895 chip_antibody_lot=151302 Hotspot_Score=0.5216 Hotspot_Percentile=81 GSM=GSM486707 dateUnrestricted=2011-02-11
track CD34_H3K4me3_9629s
bigDataUrl CD34_H3K4me3_9629.bigWig
shortLabel CD34 H3K4me3 29
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.5312 Pcnt=74 DonorID:CD34_39629)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39629 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=0 chip_antibody_catalog=0 chip_antibody_lot=0 Hotspot_Score=0.5312 Hotspot_Percentile=74 GSM=GSM486709 dateUnrestricted=2011-01-28
track CD34_H3K4me3_9804s
bigDataUrl CD34_H3K4me3_9804.bigWig
shortLabel CD34 H3K4me3 04
longLabel CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3749 Pcnt=46 DonorID:CD34_39804)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39804 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8580 chip_antibody_lot=500363 Hotspot_Score=0.3749 Hotspot_Percentile=46 GSM=GSM486711 dateUnrestricted=2011-01-28
track CD34_H3K4me3_1492s
bigDataUrl CD34_H3K4me3_1492.bigWig
shortLabel MCD34 H3K4me3 92
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2857 Pcnt=28 DonorID:RO01492)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Cauc donor_sex=Male biomaterial_type="Primary Cell" donor_id="UW RO 01492" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K4Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=07-473 chip_antibody_provider=Millipore chip_antibody_lot=DAM1623866 experiment_type="Histone H3K4me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.2857 Hotspot_Percentile=28 GSM=GSM621667 dateUnrestricted=2011-08-12
track CD34_H3K4me3_1536s
bigDataUrl CD34_H3K4me3_1536.bigWig
shortLabel MCD34 H3K4me3 36
longLabel Mobilized CD34 Primary Cells H3K4me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2531 Pcnt=18 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 0,250,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="Mobilized CD34 Primary Cells" markers=CD34+ donor_id="Mobilized CD34_5/28/09" donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded="not passaged" experiment_type="Histone H3K4me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2-15 ug" chip_antibody=H3K4Me3 chip_antibody_provider=Millipore chip_antibody_catalog=07-473 chip_antibody_lot=R0903B0054 Hotspot_Score=0.2531 Hotspot_Percentile=18 GSM=GSM621665 dateUnrestricted=2011-08-12
track CD34_H3K9me3_9811s
bigDataUrl CD34_H3K9me3_9811.bigWig
shortLabel CD34 H3K9me3 11
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.2121 Pcnt=71 DonorID:CD34_39811)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39811 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.2121 Hotspot_Percentile=71 GSM=GSM486712 dateUnrestricted=2010-10-06
track CD34_H3K9me3_9889s
bigDataUrl CD34_H3K9me3_9889.bigWig
shortLabel CD34 H3K9me3 89
longLabel CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.3378 Pcnt=93 DonorID:CD34_39889)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata molecule="genomic DNA" disease=none biomaterial_provider=FHCRC biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id=CD34_39889 donor_age=NA donor_health_status=none donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Histone H3K9me3" extraction_protocol="SDS lysis" extraction_protocol_type_of_sonicator=Bioruptor extraction_protocol_sonication_cycles=1 chip_protocol=Bernstein_BROAD_ENCODE_protocol chip_protocol_chromatin_amount="10 million cells" chip_protocol_bead_type="Protein A-Sepharose 4B" chip_protocol_bead_amount="70 ul bed volume" chip_protocol_antibody_amount="2 - 15 ug" chip_antibody=H3K9Me3 chip_antibody_provider=Abcam chip_antibody_catalog=ab8898 chip_antibody_lot=484088 Hotspot_Score=0.3378 Hotspot_Percentile=93 GSM=GSM486710 dateUnrestricted=2010-10-06
track CD34_H3K9me3_1536s
bigDataUrl CD34_H3K9me3_1536.bigWig
shortLabel MCD34 H3K9me3 36
longLabel Mobilized CD34 Primary Cells H3K9me3 Histone Modification by Chip-seq Signal from REMC/Broad (Hotspot_Score=0.1396 Pcnt=41 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 255,215,0
metadata donor_health_status=NA molecule="genomic DNA" disease=none markers=CD34+ passage_if_expanded=NA cell_type="Mobilized CD34" donor_ethnicity=Hisp donor_sex=Female biomaterial_type="Primary Cell" donor_id="UW RO 01536" biomaterial_provider=UW donor_age=NA chip_protocol_bead_type="Protein A-Sepharose 4B" chip_antibody=H3K9Me3 chip_protocol_chromatin_amount="10 million cells" extraction_protocol="SDS lysis" chip_protocol_antibody_amount="2-15 ug" chip_protocol_bead_amount="70 ul bed volume" chip_protocol=Bernstein_BROAD_ENCODE_protocol extraction_protocol_sonication_cycles=1 chip_antibody_catalog=ab8898 chip_antibody_provider=Abcam chip_antibody_lot=484088 experiment_type="Histone H3K9me3" extraction_protocol_type_of_sonicator=Bioruptor Hotspot_Score=0.1396 Hotspot_Percentile=41 GSM=GSM621663 dateUnrestricted=2011-08-12
track MCD34_DNase_38s
bigDataUrl MCD34_DNase_38.bigWig
shortLabel MCD34 DNase 38 99
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3195 Pcnt=10 DonorID:RO00738)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 00738" donor_age="49 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3195 Hotspot_Percentile=10 GSM=GSM530664 dateUnrestricted=2011-01-28
track MCD34_DNase_80s
bigDataUrl MCD34_DNase_80.bigWig
shortLabel MCD34 DNase 80 71
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5473 Pcnt=82 DonorID:RO01480)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01480" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5473 Hotspot_Percentile=82 GSM=GSM530658 dateUnrestricted=2011-01-28
track MCD34_DNase_92_06s
bigDataUrl MCD34_DNase_92_06.bigWig
shortLabel MCD34 DNase 92 06
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4157 Pcnt=47 DonorID:RO01492)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4157 Hotspot_Percentile=47 GSM=GSM595919 dateUnrestricted=2011-06-21
track MCD34_DNase_92_74s
bigDataUrl MCD34_DNase_92_74.bigWig
shortLabel MCD34 DNase 92 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5938 Pcnt=87 DonorID:RO01492)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01492" donor_age="39 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5938 Hotspot_Percentile=87 GSM=GSM530659 dateUnrestricted=2011-01-28
track MCD34_DNase_08s
bigDataUrl MCD34_DNase_08.bigWig
shortLabel MCD34 DNase 08 02
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3758 Pcnt=25 DonorID:RO01508)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01508" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3758 Hotspot_Percentile=25 GSM=GSM493386 dateUnrestricted=2011-06-21
track MCD34_DNase_17s
bigDataUrl MCD34_DNase_17.bigWig
shortLabel MCD34 DNase 17 29
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.4378 Pcnt=55 DonorID:RO01517)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01517" donor_age="year 43" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.4378 Hotspot_Percentile=55 GSM=GSM595917 dateUnrestricted=2011-06-21
track MCD34_DNase_20s
bigDataUrl MCD34_DNase_20.bigWig
shortLabel MCD34 DNase 20 85
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.5165 Pcnt=70 DonorID:RO01520)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01520" donor_age="50 years" donor_health_status=NA donor_sex=Female donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.5165 Hotspot_Percentile=70 GSM=GSM530660 dateUnrestricted=2011-01-28
track MCD34_DNase_27s
bigDataUrl MCD34_DNase_27.bigWig
shortLabel MCD34 DNase 27 66
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3399 Pcnt=12 DonorID:RO01527)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01527" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3399 Hotspot_Percentile=12 GSM=GSM493387 dateUnrestricted=2011-06-21
track MCD34_DNase_35_74s
bigDataUrl MCD34_DNase_35_74.bigWig
shortLabel MCD34 DNase 35 74
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6446 Pcnt=95 DonorID:RO01535)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6446 Hotspot_Percentile=95 GSM=GSM493384 dateUnrestricted=2011-06-21
track MCD34_DNase_35_97s
bigDataUrl MCD34_DNase_35_97.bigWig
shortLabel MCD34 DNase 35 97
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3815 Pcnt=27 DonorID:RO01535)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01535" donor_age=NA donor_health_status=NA donor_sex=Unknown donor_ethnicity=NA passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3815 Hotspot_Percentile=27 GSM=GSM595918 dateUnrestricted=2011-06-21
track MCD34_DNase_36_36s
bigDataUrl MCD34_DNase_36_36.bigWig
shortLabel MCD34 DNase 36 36
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3003 Pcnt=7 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3003 Hotspot_Percentile=7 GSM=GSM595914 dateUnrestricted=2011-06-21
track MCD34_DNase_36_39s
bigDataUrl MCD34_DNase_36_39.bigWig
shortLabel MCD34 DNase 36 39
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3943 Pcnt=35 DonorID:RO01536)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01536" donor_age="27 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Hispanic passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3943 Hotspot_Percentile=35 GSM=GSM530652 dateUnrestricted=2011-01-28
track MCD34_DNase_49s
bigDataUrl MCD34_DNase_49.bigWig
shortLabel MCD34 DNase 49 34
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.6542 Pcnt=100 DonorID:RO01549)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01549" donor_age="33 years" donor_health_status=NA donor_sex=Female donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.6542 Hotspot_Percentile=100 GSM=GSM530657 dateUnrestricted=2011-01-28
track MCD34_DNase_62s
bigDataUrl MCD34_DNase_62.bigWig
shortLabel MCD34 DNase 62 96
longLabel Mobilized CD34 Primary Cells DNase Hypersensitivity Raw Signal from REMC/UW (Hotspot_Score=0.3667 Pcnt=22 DonorID:RO01562)
type bigWig 0 90000
parent containersampleCD34
color 152,251,152
metadata molecule="genomic DNA" disease=None biomaterial_provider="FHCRC HEIMFELD" biomaterial_type="Primary Cell" cell_type="CD34 Primary Cells" markers=CD34+ donor_id="RO 01562" donor_age="42 years" donor_health_status=NA donor_sex=Male donor_ethnicity=Caucasian passage_if_expanded=NA experiment_type="Chromatin Accessibility" extraction_protocol="Qiagen minElut" dnase_protocol="Stamlab DNase Protocol" Hotspot_Score=0.3667 Hotspot_Percentile=22 GSM=GSM530663 dateUnrestricted=2011-01-28